Wall clock time and date at job start Tue Mar 31 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48846 * 110.99785 * 2 1 4 4 C 1.54836 * 104.08199 * 200.21047 * 3 2 1 5 5 H 1.09003 * 109.11906 * 267.00585 * 4 3 2 6 6 C 1.51349 * 109.42328 * 148.26814 * 4 3 2 7 7 C 1.52709 * 111.47072 * 204.36463 * 6 4 3 8 8 C 1.53017 * 107.95168 * 65.37184 * 7 6 4 9 9 N 1.45585 * 108.93803 * 302.60323 * 8 7 6 10 10 C 1.34783 * 117.20130 * 205.98092 * 9 8 7 11 11 O 1.21582 * 119.99742 * 179.74160 * 10 9 8 12 12 N 1.34775 * 119.99947 * 359.74719 * 10 9 8 13 13 C 1.46496 * 119.99642 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46995 * 179.97438 * 13 12 10 15 15 C 1.50698 * 109.47184 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 C 1.43734 * 125.59377 * 25.70178 * 9 8 7 24 24 H 1.08997 * 108.09774 * 240.46659 * 23 9 8 25 25 C 1.48915 * 111.00354 * 245.36961 * 2 1 3 26 26 H 1.09000 * 109.46868 * 174.75204 * 1 2 3 27 27 H 1.09003 * 109.47431 * 294.75714 * 1 2 3 28 28 H 1.08998 * 109.46699 * 54.75925 * 1 2 3 29 29 H 1.08997 * 110.50932 * 318.86058 * 3 2 1 30 30 H 1.09004 * 110.51095 * 81.42791 * 3 2 1 31 31 H 1.08999 * 109.07485 * 324.87636 * 6 4 3 32 32 H 1.09000 * 109.08151 * 83.91343 * 6 4 3 33 33 H 1.08997 * 109.79610 * 185.09168 * 7 6 4 34 34 H 1.09010 * 109.79335 * 305.88053 * 7 6 4 35 35 H 1.08993 * 109.64761 * 182.68731 * 8 7 6 36 36 H 1.09001 * 109.38293 * 62.36316 * 8 7 6 37 37 H 0.96998 * 120.00166 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.47001 * 59.99917 * 13 12 10 39 39 H 1.09001 * 109.47464 * 299.99358 * 13 12 10 40 40 H 1.08998 * 109.46509 * 60.00302 * 14 13 12 41 41 H 1.08993 * 109.46955 * 299.99862 * 14 13 12 42 42 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 43 43 H 1.09001 * 110.55969 * 41.75046 * 25 2 1 44 44 H 1.08993 * 110.68498 * 278.96308 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0023 1.3896 0.0000 4 6 3.4531 1.2363 -0.5188 5 1 4.1266 1.1268 0.3312 6 6 3.8457 2.4781 -1.2899 7 6 4.9562 2.1835 -2.2960 8 6 4.3953 1.2279 -3.3512 9 7 3.9063 0.0271 -2.6890 10 6 3.8794 -1.1088 -3.4141 11 8 3.4848 -2.1425 -2.9101 12 7 4.2900 -1.0987 -4.6977 13 6 4.2613 -2.3335 -5.4855 14 6 4.7744 -2.0489 -6.8986 15 6 4.7455 -3.3192 -7.7089 16 1 4.3957 -4.2376 -7.2609 17 6 5.1647 -3.3088 -9.0223 18 7 5.5902 -2.1904 -9.5679 19 14 5.1281 -4.8832 -10.0269 20 1 5.6263 -4.6070 -11.3984 21 1 3.7349 -5.3922 -10.0990 22 1 5.9946 -5.9022 -9.3819 23 6 3.4550 -0.0521 -1.3267 24 1 4.0913 -0.7632 -0.8000 25 6 2.0027 -0.5794 -1.2637 26 1 -0.3633 -1.0234 -0.0940 27 1 -0.3634 0.4304 0.9332 28 1 -0.3632 0.5930 -0.8393 29 1 1.4214 2.0216 -0.6716 30 1 1.9971 1.8007 1.0095 31 1 2.9736 2.8571 -1.8227 32 1 4.1930 3.2375 -0.5895 33 1 5.2797 3.1099 -2.7705 34 1 5.7994 1.7149 -1.7883 35 1 5.1806 0.9610 -4.0584 36 1 3.5748 1.7136 -3.8795 37 1 4.6045 -0.2740 -5.0999 38 1 3.2385 -2.7066 -5.5391 39 1 4.8967 -3.0817 -5.0118 40 1 5.7971 -1.6756 -6.8453 41 1 4.1387 -1.3009 -7.3722 42 1 5.6088 -1.3727 -9.0464 43 1 1.4291 -0.2243 -2.1199 44 1 1.9924 -1.6685 -1.2224 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591872334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:00 Heat of formation + Delta-G solvation = -25.773902 kcal Electronic energy + Delta-G solvation = -22880.147995 eV Core-core repulsion = 19639.081807 eV Total energy + Delta-G solvation = -3241.066188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.02956 -38.80414 -36.46407 -35.11041 -33.51593 -33.02464 -31.66220 -29.46407 -27.91971 -26.75130 -24.83090 -23.92333 -22.61778 -21.61806 -21.40781 -20.50251 -18.71081 -17.99647 -16.73310 -16.27366 -16.16344 -15.75466 -15.08474 -14.78827 -14.34343 -14.24765 -14.12466 -13.83659 -13.68288 -13.51108 -13.14896 -12.80344 -12.54867 -12.18132 -11.98439 -11.75282 -11.65407 -11.58698 -11.31470 -11.01831 -10.95605 -10.79876 -10.72387 -10.41452 -10.17538 -9.95377 -9.72824 -8.77541 -8.71584 -8.69519 -8.41634 -8.25394 -6.43874 -4.13515 2.80372 3.43694 3.45221 3.46547 3.63844 3.89357 4.08825 4.25315 4.38844 4.51419 4.57500 4.66379 4.72189 5.01403 5.08133 5.19506 5.22257 5.25799 5.34453 5.35941 5.36950 5.43123 5.52720 5.61324 5.65525 5.70172 5.77649 5.89967 6.01582 6.05417 6.17377 6.27494 6.47233 6.63388 6.76285 6.83983 6.88072 7.04215 7.31992 7.36352 8.08099 8.26244 8.38690 8.80012 8.90606 9.58293 10.97268 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028737 B = 0.003452 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.115537 B = 8108.161361 C = 8791.770866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.515 5.515 3 C 0.034 3.966 4 C -0.091 4.091 5 H 0.086 0.914 6 C -0.112 4.112 7 C -0.128 4.128 8 C 0.110 3.890 9 N -0.619 5.619 10 C 0.694 3.306 11 O -0.589 6.589 12 N -0.740 5.740 13 C 0.146 3.854 14 C 0.000 4.000 15 C -0.601 4.601 16 H 0.053 0.947 17 C 0.017 3.983 18 N -0.911 5.911 19 Si 1.071 2.929 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.287 1.287 23 C 0.175 3.825 24 H 0.072 0.928 25 C 0.027 3.973 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.392 0.608 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.013 0.987 41 H 0.012 0.988 42 H 0.268 0.732 43 H 0.044 0.956 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.053 12.727 18.368 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.239 5.239 3 C -0.094 4.094 4 C -0.110 4.110 5 H 0.104 0.896 6 C -0.150 4.150 7 C -0.166 4.166 8 C -0.013 4.013 9 N -0.358 5.358 10 C 0.395 3.605 11 O -0.467 6.467 12 N -0.395 5.395 13 C 0.023 3.977 14 C -0.037 4.037 15 C -0.640 4.640 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.547 5.547 19 Si 0.899 3.101 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.213 1.213 23 C 0.070 3.930 24 H 0.090 0.910 25 C -0.101 4.101 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.227 0.773 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.860 11.022 17.733 21.437 hybrid contribution -0.553 1.586 0.600 1.783 sum -5.413 12.608 18.333 22.899 Atomic orbital electron populations 1.22490 0.87947 1.02260 1.00762 1.65745 1.08390 1.14902 1.34837 1.23477 0.94113 0.90770 1.01057 1.21381 0.97301 0.93920 0.98422 0.89593 1.21172 0.98950 0.96682 0.98171 1.21702 0.98453 0.99583 0.96892 1.21391 0.98635 0.86085 0.95234 1.46175 1.69209 1.08518 1.11871 1.16083 0.79186 0.83524 0.81750 1.90874 1.53856 1.30848 1.71093 1.45744 1.68981 1.14217 1.10559 1.21431 1.00828 0.83612 0.91785 1.19446 0.95683 0.98416 0.90161 1.21887 1.48167 0.95070 0.98861 0.92832 1.25884 0.93321 1.03536 0.95937 1.70805 1.43685 1.00288 1.39884 0.83507 0.76585 0.74007 0.76007 1.20748 1.21310 1.21296 1.20107 0.95259 0.96517 0.81141 0.91002 1.23768 0.94260 1.02084 0.90030 0.91066 0.91289 0.95444 0.93557 0.89920 0.91770 0.91177 0.90020 0.90905 0.90388 0.92118 0.77295 0.92618 0.92566 0.96928 0.96950 0.92209 0.93781 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.56 60.06 0.57 0.71 16 2 N -0.51 -5.93 5.69 -237.20 -1.35 -7.28 16 3 C 0.03 0.32 5.97 -1.78 -0.01 0.30 16 4 C -0.09 -0.86 3.09 -90.96 -0.28 -1.14 16 5 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.11 -0.86 5.29 -27.71 -0.15 -1.00 16 7 C -0.13 -1.03 6.08 -26.87 -0.16 -1.20 16 8 C 0.11 1.17 5.68 -4.53 -0.03 1.14 16 9 N -0.62 -8.60 2.99 -174.08 -0.52 -9.12 16 10 C 0.69 12.53 7.84 -86.91 -0.68 11.84 16 11 O -0.59 -12.61 14.41 5.29 0.08 -12.53 16 12 N -0.74 -13.46 5.36 -65.22 -0.35 -13.81 16 13 C 0.15 3.22 5.61 -4.04 -0.02 3.20 16 14 C 0.00 0.01 4.40 -27.88 -0.12 -0.11 16 15 C -0.60 -17.03 9.11 -34.44 -0.31 -17.35 16 16 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 17 C 0.02 0.49 5.46 -17.82 -0.10 0.39 16 18 N -0.91 -27.38 13.65 55.43 0.76 -26.63 16 19 Si 1.07 25.15 29.90 -169.99 -5.08 20.07 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.18 2.28 2.77 -69.01 -0.19 2.09 16 24 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 25 C 0.03 0.38 4.94 -1.85 -0.01 0.37 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.03 0.26 7.98 -51.93 -0.41 -0.15 16 29 H 0.05 0.42 7.26 -51.93 -0.38 0.04 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.50 7.46 -51.93 -0.39 0.12 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.08 0.82 6.32 -51.93 -0.33 0.50 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.39 6.18 6.04 -40.82 -0.25 5.93 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 41 H 0.01 0.31 8.01 -51.93 -0.42 -0.10 16 42 H 0.27 7.92 7.22 -40.82 -0.29 7.63 16 43 H 0.04 0.65 8.00 -51.93 -0.42 0.24 16 44 H 0.10 1.66 7.13 -51.93 -0.37 1.29 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -32.54 339.83 -10.36 -42.90 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.52 Total: 2.03 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.49 Total: -0.75 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -1.46 Total: -56.84 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.08 Total: -12.53 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.08 Total: 20.07 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.54 -10.36 -42.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591872334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.127 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds