Wall clock time and date at job start Tue Mar 31 2020 05:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 113.99985 * 2 1 4 4 C 1.53002 * 109.47067 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47181 * 65.00158 * 4 3 2 6 6 C 1.36932 * 119.99774 * 269.03801 * 5 4 3 7 7 H 1.08006 * 120.00421 * 342.79262 * 6 5 4 8 8 C 1.38814 * 120.00094 * 162.79868 * 6 5 4 9 9 N 1.31621 * 119.99742 * 21.82451 * 8 6 5 10 10 Si 1.86797 * 120.00175 * 201.83098 * 8 6 5 11 11 H 1.48495 * 109.47040 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47319 * 119.99807 * 10 8 6 13 13 H 1.48505 * 109.47074 * 239.99488 * 10 8 6 14 14 C 1.46498 * 119.99839 * 89.03440 * 5 4 3 15 15 C 1.50701 * 109.46817 * 100.34910 * 14 5 4 16 16 C 1.35322 * 126.12603 * 93.94694 * 15 14 5 17 17 C 1.39870 * 107.91919 * 180.02562 * 16 15 14 18 18 N 1.30839 * 108.19979 * 359.73416 * 17 16 15 19 19 N 1.34944 * 126.12723 * 273.96785 * 15 14 5 20 20 C 1.46496 * 126.03778 * 359.95525 * 19 15 14 21 21 C 1.52999 * 109.47529 * 272.89176 * 20 19 15 22 22 C 1.52999 * 109.47448 * 291.71115 * 21 20 19 23 23 C 1.53004 * 109.47393 * 171.70752 * 21 20 19 24 24 H 1.08999 * 109.47250 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46544 * 299.99479 * 1 2 3 26 26 H 1.08995 * 109.47714 * 59.99039 * 1 2 3 27 27 H 1.09005 * 109.47054 * 60.00640 * 3 2 1 28 28 H 1.08999 * 109.47592 * 300.00483 * 3 2 1 29 29 H 1.09006 * 109.46797 * 304.99953 * 4 3 2 30 30 H 1.08997 * 109.46990 * 185.00282 * 4 3 2 31 31 H 0.96998 * 120.00094 * 180.02562 * 9 8 6 32 32 H 1.09004 * 109.47446 * 340.35106 * 14 5 4 33 33 H 1.08999 * 109.46933 * 220.34751 * 14 5 4 34 34 H 1.08001 * 126.03737 * 0.02562 * 16 15 14 35 35 H 1.07997 * 125.89636 * 179.97438 * 17 16 15 36 36 H 1.09001 * 109.47245 * 152.89524 * 20 19 15 37 37 H 1.09001 * 109.46890 * 32.89781 * 20 19 15 38 38 H 1.08998 * 109.46752 * 51.71026 * 21 20 19 39 39 H 1.08995 * 109.46844 * 297.03686 * 22 21 20 40 40 H 1.08996 * 109.47092 * 177.03675 * 22 21 20 41 41 H 1.09003 * 109.47133 * 57.03094 * 22 21 20 42 42 H 1.08994 * 109.47282 * 180.02562 * 23 21 20 43 43 H 1.09000 * 109.46990 * 300.00660 * 23 21 20 44 44 H 1.08998 * 109.46949 * 60.00394 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1157 -0.7955 -1.3310 7 1 4.1771 -1.3850 -0.4280 8 6 4.1788 -1.4166 -2.5708 9 7 4.5332 -0.7275 -3.6347 10 14 3.7608 -3.2303 -2.7293 11 1 3.3962 -3.7725 -1.3958 12 1 2.6162 -3.3949 -3.6609 13 1 4.9382 -3.9654 -3.2571 14 6 4.2660 1.3991 -2.4211 15 6 5.7558 1.5900 -2.5443 16 6 6.5970 0.8400 -3.2935 17 6 7.8896 1.3482 -3.1282 18 7 7.8259 2.3702 -2.3137 19 7 6.4901 2.5391 -1.9271 20 6 5.9795 3.5683 -1.0182 21 6 5.5294 4.7860 -1.8278 22 6 6.7514 5.4662 -2.4482 23 6 4.8092 5.7730 -0.9068 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 1.6887 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 3.8514 0.5681 0.8410 30 1 3.9785 2.1764 0.0890 31 1 4.5769 -1.1614 -4.5012 32 1 3.7839 2.3696 -2.3032 33 1 3.8867 0.9116 -3.3192 34 1 6.3192 -0.0021 -3.9100 35 1 8.7849 0.9656 -3.5955 36 1 6.7670 3.8640 -0.3249 37 1 5.1329 3.1710 -0.4583 38 1 4.8511 4.4659 -2.6187 39 1 7.4042 5.8329 -1.6562 40 1 6.4265 6.3022 -3.0675 41 1 7.2940 4.7479 -3.0628 42 1 4.4881 6.6403 -1.4836 43 1 3.9386 5.2884 -0.4647 44 1 5.4874 6.0931 -0.1159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592514897.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:55 Heat of formation + Delta-G solvation = 66.733390 kcal Electronic energy + Delta-G solvation = -23774.879520 eV Core-core repulsion = 20537.824750 eV Total energy + Delta-G solvation = -3237.054771 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.07033 -37.39535 -36.07380 -35.48230 -31.76174 -31.07185 -29.72510 -28.20430 -27.02938 -25.85154 -25.49122 -25.32160 -23.13679 -20.78581 -20.39009 -19.78850 -18.35471 -17.15547 -15.85550 -15.44725 -15.33189 -14.87170 -14.76007 -14.56350 -14.23649 -13.49219 -13.47541 -13.16939 -12.98498 -12.61730 -12.43431 -12.23619 -11.97735 -11.81947 -11.45409 -11.31934 -11.19351 -11.07085 -10.92842 -10.72135 -10.63895 -10.56515 -10.38211 -10.16026 -10.06474 -9.63341 -9.48143 -9.03040 -8.27222 -8.09669 -7.10791 -6.95449 -5.62836 -3.05780 3.05826 3.45420 3.53506 3.55388 3.58386 4.19525 4.42818 4.56837 4.92619 5.00584 5.16740 5.30905 5.48337 5.51072 5.59931 5.63632 5.70794 5.72225 5.85709 5.89922 5.90365 5.97157 5.99256 6.01625 6.05428 6.09525 6.14802 6.24840 6.36089 6.46281 6.48104 6.51421 6.70531 6.95803 7.34142 7.69443 7.80671 7.87026 7.90576 8.15891 8.29351 8.55992 8.96260 9.26945 9.85749 10.27613 11.28332 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014274 B = 0.007452 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.170008 B = 3756.246584 C = 5362.604517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.360 6.360 3 C 0.044 3.956 4 C 0.148 3.852 5 N -0.586 5.586 6 C -0.215 4.215 7 H 0.074 0.926 8 C 0.001 3.999 9 N -0.897 5.897 10 Si 0.898 3.102 11 H -0.282 1.282 12 H -0.291 1.291 13 H -0.295 1.295 14 C 0.196 3.804 15 C 0.108 3.892 16 C -0.235 4.235 17 C 0.012 3.988 18 N -0.337 5.337 19 N -0.382 5.382 20 C 0.140 3.860 21 C -0.114 4.114 22 C -0.141 4.141 23 C -0.143 4.143 24 H 0.077 0.923 25 H 0.027 0.973 26 H 0.033 0.967 27 H 0.028 0.972 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.251 0.749 32 H 0.011 0.989 33 H 0.151 0.849 34 H 0.175 0.825 35 H 0.160 0.840 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.918 9.573 3.794 10.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C -0.035 4.035 4 C 0.020 3.980 5 N -0.306 5.306 6 C -0.343 4.343 7 H 0.092 0.908 8 C -0.193 4.193 9 N -0.546 5.546 10 Si 0.729 3.271 11 H -0.207 1.207 12 H -0.218 1.218 13 H -0.223 1.223 14 C 0.069 3.931 15 C -0.019 4.019 16 C -0.263 4.263 17 C -0.172 4.172 18 N -0.160 5.160 19 N -0.167 5.167 20 C 0.018 3.982 21 C -0.133 4.133 22 C -0.199 4.199 23 C -0.201 4.201 24 H 0.095 0.905 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.029 0.971 33 H 0.167 0.833 34 H 0.192 0.808 35 H 0.177 0.823 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.179 10.301 4.339 11.388 hybrid contribution -0.757 -1.303 -0.378 1.554 sum -2.936 8.998 3.961 10.260 Atomic orbital electron populations 1.22637 0.83461 1.01793 0.98634 1.88130 1.17329 1.27404 1.94924 1.23398 0.97771 0.84652 0.97701 1.20955 0.90048 0.96386 0.90569 1.44077 1.75591 1.03589 1.07341 1.19214 1.41078 0.81464 0.92541 0.90845 1.24812 1.01090 0.97914 0.95500 1.69771 1.50901 1.34268 0.99631 0.86252 0.77894 0.85568 0.77429 1.20689 1.21807 1.22309 1.20949 0.84941 0.91622 0.95542 1.22444 0.97761 0.88763 0.92957 1.22140 0.89644 1.05964 1.08600 1.23791 0.99106 0.95533 0.98780 1.77000 0.97076 1.21829 1.20086 1.48487 1.05094 1.25341 1.37771 1.21600 0.99089 0.86623 0.90915 1.21549 0.97986 0.95167 0.98631 1.21772 0.97310 1.00121 1.00675 1.21772 1.00141 0.98833 0.99346 0.90475 0.95454 0.94882 0.95416 0.94302 0.92798 0.93146 0.93763 0.97076 0.83264 0.80840 0.82258 0.90340 0.89625 0.90644 0.93075 0.93356 0.91627 0.92424 0.92482 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.11 10.22 -35.23 -0.36 -7.47 16 3 C 0.04 0.78 6.28 37.16 0.23 1.01 16 4 C 0.15 2.86 6.04 -4.04 -0.02 2.83 16 5 N -0.59 -13.60 2.52 -174.61 -0.44 -14.04 16 6 C -0.21 -5.61 9.14 -15.06 -0.14 -5.75 16 7 H 0.07 1.99 7.89 -52.48 -0.41 1.58 16 8 C 0.00 0.02 5.37 -17.43 -0.09 -0.07 16 9 N -0.90 -23.18 6.03 55.49 0.33 -22.84 16 10 Si 0.90 21.49 29.61 -169.99 -5.03 16.46 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 14 C 0.20 4.45 5.11 -5.19 -0.03 4.42 16 15 C 0.11 2.46 6.36 -82.26 -0.52 1.94 16 16 C -0.23 -5.53 9.67 -40.01 -0.39 -5.91 16 17 C 0.01 0.26 12.03 -17.36 -0.21 0.05 16 18 N -0.34 -7.26 11.81 30.62 0.36 -6.89 16 19 N -0.38 -7.86 3.26 -57.14 -0.19 -8.05 16 20 C 0.14 2.31 5.45 -4.04 -0.02 2.28 16 21 C -0.11 -1.59 3.10 -90.62 -0.28 -1.88 16 22 C -0.14 -1.98 9.13 37.16 0.34 -1.64 16 23 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 1.08 8.01 -51.93 -0.42 0.66 16 30 H 0.05 0.86 5.14 -51.93 -0.27 0.60 16 31 H 0.25 6.37 8.31 -40.82 -0.34 6.03 16 32 H 0.01 0.23 7.72 -51.93 -0.40 -0.17 16 33 H 0.15 3.81 5.16 -52.85 -0.27 3.54 16 34 H 0.17 4.36 5.51 -52.49 -0.29 4.07 16 35 H 0.16 2.88 8.06 -52.49 -0.42 2.46 16 36 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 37 H 0.09 1.38 4.91 -51.93 -0.26 1.13 16 38 H 0.08 1.17 8.04 -51.93 -0.42 0.76 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 1.10 7.07 -51.93 -0.37 0.74 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -28.77 348.02 -7.06 -35.84 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -7.31 Total: 4.07 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 0.32 Total: -2.32 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.07 Total: -51.82 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.36 Total: -7.47 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.77 -7.06 -35.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592514897.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.571 kcal (2) G-P(sol) polarization free energy of solvation -28.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds