Wall clock time and date at job start Tue Mar 31 2020 05:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.34771 * 119.99622 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00541 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99489 * 180.02562 * 12 11 10 15 15 C 1.48117 * 127.84489 * 359.68180 * 14 12 11 16 16 C 1.54678 * 104.52099 * 140.25107 * 15 14 12 17 17 H 1.08999 * 112.75222 * 262.22656 * 16 15 14 18 18 C 1.56291 * 108.87907 * 136.50955 * 16 15 14 19 19 C 1.54841 * 104.37184 * 223.70830 * 18 16 15 20 20 C 1.54841 * 102.73719 * 38.64593 * 19 18 16 21 21 C 1.54162 * 104.32561 * 321.80758 * 20 19 18 22 22 C 1.53001 * 111.82132 * 260.29699 * 21 20 19 23 23 N 1.46898 * 109.46950 * 298.61947 * 22 21 20 24 24 C 1.48120 * 127.84121 * 180.02562 * 14 12 11 25 25 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 0.96996 * 119.99606 * 0.02562 * 11 10 9 31 31 H 1.08997 * 110.39299 * 259.09661 * 15 14 12 32 32 H 1.08997 * 110.39019 * 21.49147 * 15 14 12 33 33 H 1.09003 * 110.04852 * 105.17355 * 18 16 15 34 34 H 1.08995 * 110.82123 * 342.62947 * 18 16 15 35 35 H 1.08996 * 110.75937 * 280.32706 * 19 18 16 36 36 H 1.09007 * 110.91443 * 157.03065 * 19 18 16 37 37 H 1.09001 * 110.45881 * 203.09490 * 20 19 18 38 38 H 1.08995 * 110.57219 * 80.57804 * 20 19 18 39 39 H 1.08996 * 109.46902 * 58.62127 * 22 21 20 40 40 H 1.09001 * 109.46681 * 178.62111 * 22 21 20 41 41 H 1.00899 * 111.00211 * 56.05224 * 23 22 21 42 42 H 1.00906 * 110.99552 * 180.02562 * 23 22 21 43 43 H 1.09003 * 110.39402 * 338.51254 * 24 14 12 44 44 H 1.09004 * 110.39525 * 100.90290 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 0.0012 12 6 2.1864 -6.0980 0.0007 13 8 3.4023 -6.0981 0.0003 14 7 1.5125 -7.2652 0.0008 15 6 0.0451 -7.4673 0.0077 16 6 -0.1869 -8.6579 -0.9520 17 1 -0.4748 -8.3413 -1.9545 18 6 -1.2262 -9.6314 -0.3080 19 6 -0.6364 -11.0416 -0.5552 20 6 0.8807 -10.8197 -0.3390 21 6 1.1547 -9.4325 -0.9531 22 6 1.7510 -9.5402 -2.3580 23 7 3.0372 -10.2468 -2.2912 24 6 2.0710 -8.6370 0.0009 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5566 0.8902 28 1 2.8718 -3.6044 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 0.5426 -4.9308 0.0011 31 1 -0.2996 -7.7135 1.0120 32 1 -0.4627 -6.5762 -0.3613 33 1 -2.1912 -9.5296 -0.8045 34 1 -1.3246 -9.4414 0.7607 35 1 -0.8373 -11.3712 -1.5745 36 1 -1.0285 -11.7592 0.1656 37 1 1.4557 -11.5866 -0.8581 38 1 1.1201 -10.8198 0.7243 39 1 1.0663 -10.0920 -3.0020 40 1 1.9062 -8.5408 -2.7644 41 1 2.9305 -11.1519 -1.8582 42 1 3.4518 -10.3305 -3.2073 43 1 3.0948 -8.6303 -0.3733 44 1 2.0353 -9.0617 1.0042 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593707967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:10 Heat of formation + Delta-G solvation = -38.842901 kcal Electronic energy + Delta-G solvation = -22571.110524 eV Core-core repulsion = 19329.477622 eV Total energy + Delta-G solvation = -3241.632902 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.70077 -38.73577 -35.00049 -34.72601 -34.27788 -32.74876 -30.22957 -30.00949 -28.81149 -25.85387 -25.59119 -24.28703 -22.82383 -21.03041 -20.76805 -19.51981 -18.82317 -17.63675 -16.58309 -16.36354 -16.01295 -15.59228 -14.90414 -14.70020 -14.62560 -14.47670 -14.04687 -13.69008 -13.49172 -13.35115 -12.90373 -12.54113 -12.43157 -12.21078 -11.78010 -11.37842 -11.22310 -11.17434 -11.01350 -10.99814 -10.96648 -10.81183 -10.64836 -10.58930 -10.26945 -9.79526 -9.49168 -9.21562 -8.88182 -8.65353 -8.42046 -8.10407 -6.06020 -4.08303 2.97557 3.32147 3.38038 3.43071 3.65710 4.00169 4.13065 4.27627 4.41205 4.56568 4.62056 4.89816 4.94795 4.95907 5.00326 5.05034 5.17312 5.31092 5.32910 5.42981 5.54102 5.56857 5.60033 5.70014 5.72073 5.82618 5.92007 6.00303 6.06167 6.12505 6.31931 6.46006 6.50276 6.82904 6.89131 7.09184 7.19925 7.43899 7.62489 7.67762 7.93619 8.30663 8.49399 8.97005 9.10758 9.56202 11.05732 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031535 B = 0.003202 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.678714 B = 8742.208633 C = 9241.325999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.014 3.986 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.721 3.279 13 O -0.593 6.593 14 N -0.646 5.646 15 C 0.107 3.893 16 C -0.098 4.098 17 H 0.090 0.910 18 C -0.117 4.117 19 C -0.124 4.124 20 C -0.111 4.111 21 C -0.073 4.073 22 C 0.083 3.917 23 N -0.847 5.847 24 C 0.138 3.862 25 H 0.261 0.739 26 H 0.021 0.979 27 H 0.022 0.978 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.391 0.609 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.027 0.973 40 H 0.074 0.926 41 H 0.337 0.663 42 H 0.342 0.658 43 H 0.096 0.904 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.137 -24.856 -2.640 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.558 4.558 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.018 3.982 11 N -0.392 5.392 12 C 0.423 3.577 13 O -0.472 6.472 14 N -0.385 5.385 15 C -0.017 4.017 16 C -0.117 4.117 17 H 0.108 0.892 18 C -0.155 4.155 19 C -0.161 4.161 20 C -0.149 4.149 21 C -0.074 4.074 22 C -0.047 4.047 23 N -0.378 5.378 24 C 0.014 3.986 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.225 0.775 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.045 0.955 40 H 0.093 0.907 41 H 0.151 0.849 42 H 0.155 0.845 43 H 0.115 0.885 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.045 -23.947 -2.168 24.237 hybrid contribution -0.665 0.265 -0.654 0.970 sum -3.710 -23.682 -2.822 24.137 Atomic orbital electron populations 1.69963 1.06085 1.26794 1.50581 1.24996 0.94895 0.99387 0.95048 0.86508 0.79862 0.82991 0.78177 1.20582 1.21203 1.19699 1.21063 0.93294 0.90359 1.51090 0.92202 1.19317 0.94255 0.91092 0.97733 1.21585 0.95622 0.80394 1.00620 1.45540 1.09786 1.05144 1.78742 1.15513 0.84908 0.79380 0.77871 1.90893 1.11490 1.85945 1.58832 1.48111 1.06396 1.04848 1.79138 1.22507 0.82132 0.98121 0.98957 1.23187 0.94249 0.94912 0.99399 0.89183 1.22809 0.97811 0.94011 1.00843 1.22488 0.95286 0.96944 1.01410 1.22452 0.96065 0.95385 1.01035 1.22108 0.94891 0.95089 0.95317 1.21634 0.89336 0.99152 0.94620 1.58653 1.25757 1.25700 1.27702 1.22247 0.99321 0.79573 0.97415 0.92907 0.96055 0.96002 0.92814 0.92837 0.77533 0.91113 0.90684 0.91464 0.90912 0.91720 0.91446 0.91791 0.90830 0.95475 0.90710 0.84910 0.84518 0.88533 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.01 0.35 5.09 -27.89 -0.14 0.20 16 10 C 0.14 3.18 5.61 -4.04 -0.02 3.16 16 11 N -0.74 -14.23 5.53 -65.22 -0.36 -14.60 16 12 C 0.72 14.05 8.57 -86.92 -0.74 13.31 16 13 O -0.59 -13.96 16.61 5.29 0.09 -13.87 16 14 N -0.65 -9.56 3.31 -174.90 -0.58 -10.14 16 15 C 0.11 1.17 6.49 -2.27 -0.01 1.15 16 16 C -0.10 -0.86 3.70 -86.95 -0.32 -1.18 16 17 H 0.09 0.80 7.88 -51.93 -0.41 0.39 16 18 C -0.12 -0.79 6.41 -23.99 -0.15 -0.95 16 19 C -0.12 -0.76 6.90 -24.79 -0.17 -0.93 16 20 C -0.11 -0.78 5.81 -25.15 -0.15 -0.92 16 21 C -0.07 -0.66 0.72 -152.17 -0.11 -0.77 16 22 C 0.08 0.77 5.81 -3.82 -0.02 0.75 16 23 N -0.85 -7.29 8.91 -10.37 -0.09 -7.38 16 24 C 0.14 1.74 6.08 -2.44 -0.01 1.73 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.39 6.63 6.86 -40.82 -0.28 6.35 16 31 H 0.07 0.70 7.23 -51.93 -0.38 0.32 16 32 H 0.07 0.81 6.85 -51.93 -0.36 0.45 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.49 7.25 -51.93 -0.38 0.11 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.39 6.22 -51.93 -0.32 0.07 16 38 H 0.07 0.53 7.18 -51.93 -0.37 0.16 16 39 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.34 2.31 7.10 -39.29 -0.28 2.03 16 42 H 0.34 2.50 9.08 -39.29 -0.36 2.14 16 43 H 0.10 1.47 7.10 -51.93 -0.37 1.11 16 44 H 0.06 0.71 7.19 -51.93 -0.37 0.34 16 LS Contribution 343.55 15.07 5.18 5.18 Total: -1.00 -33.23 343.55 -9.54 -42.77 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -7.22 Total: 5.01 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.28 Total: 2.07 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.30 Total: -57.84 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.23 -9.54 -42.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593707967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.932 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds