Wall clock time and date at job start Tue Mar 31 2020 05:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.57995 * 2 1 4 4 C 1.53188 * 109.58831 * 120.43099 * 2 1 3 5 5 C 1.53045 * 109.31047 * 174.42466 * 4 2 1 6 6 C 1.53047 * 109.53861 * 298.63573 * 5 4 2 7 7 C 1.53190 * 109.31202 * 61.36360 * 6 5 4 8 8 N 1.46926 * 108.77781 * 305.36680 * 7 6 5 9 9 C 1.34774 * 120.63114 * 233.58725 * 8 7 6 10 10 O 1.21583 * 119.99881 * 200.26755 * 9 8 7 11 11 N 1.34774 * 119.99868 * 20.25859 * 9 8 7 12 12 C 1.46964 * 120.59479 * 18.86021 * 11 9 8 13 13 C 1.53809 * 108.40041 * 124.75738 * 12 11 9 14 14 N 1.46968 * 108.58265 * 49.63390 * 13 12 11 15 15 C 1.36939 * 120.59088 * 124.66843 * 14 13 12 16 16 H 1.07995 * 120.00149 * 319.55547 * 15 14 13 17 17 C 1.38817 * 119.99509 * 139.55684 * 15 14 13 18 18 N 1.31610 * 119.99780 * 175.24841 * 17 15 14 19 19 Si 1.86801 * 120.00022 * 355.25122 * 17 15 14 20 20 H 1.48497 * 109.47138 * 88.20784 * 19 17 15 21 21 H 1.48505 * 109.46850 * 208.20984 * 19 17 15 22 22 H 1.48498 * 109.47278 * 328.20295 * 19 17 15 23 23 C 1.46963 * 118.81090 * 304.65349 * 14 13 12 24 24 C 1.46965 * 120.59464 * 199.13877 * 11 9 8 25 25 H 1.09003 * 109.47198 * 171.87541 * 1 2 3 26 26 H 1.09001 * 109.47313 * 291.87107 * 1 2 3 27 27 H 1.08998 * 109.47703 * 51.87980 * 1 2 3 28 28 H 1.08996 * 109.49461 * 294.37579 * 4 2 1 29 29 H 1.09003 * 109.49755 * 54.47625 * 4 2 1 30 30 H 1.08993 * 109.45658 * 178.61776 * 5 4 2 31 31 H 1.09000 * 109.44788 * 58.65129 * 5 4 2 32 32 H 1.09005 * 109.49106 * 301.41569 * 6 5 4 33 33 H 1.08995 * 109.52399 * 181.33464 * 6 5 4 34 34 H 1.09000 * 109.58562 * 185.57921 * 7 6 5 35 35 H 1.09004 * 109.58485 * 65.15642 * 7 6 5 36 36 H 1.09001 * 109.60908 * 244.53842 * 12 11 9 37 37 H 1.08999 * 109.61022 * 5.04722 * 12 11 9 38 38 H 1.09009 * 109.73597 * 289.85035 * 13 12 11 39 39 H 1.09001 * 109.67976 * 169.39067 * 13 12 11 40 40 H 0.97005 * 120.00219 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.60863 * 295.47933 * 23 14 13 42 42 H 1.09003 * 109.74678 * 175.05269 * 23 14 13 43 43 H 1.09004 * 109.60989 * 354.94247 * 24 11 9 44 44 H 1.08993 * 109.61431 * 115.28960 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0435 -0.7310 1.2444 5 6 3.5675 -0.8494 1.1689 6 6 3.9570 -1.6655 -0.0659 7 6 3.4650 -0.9450 -1.3251 8 7 2.0225 -0.6979 -1.1955 9 6 1.1674 -1.1033 -2.1551 10 8 0.0653 -0.5970 -2.2406 11 7 1.5340 -2.0697 -3.0200 12 6 2.6527 -2.9696 -2.7058 13 6 2.1499 -4.4201 -2.7992 14 7 1.4420 -4.5891 -4.0761 15 6 1.8147 -5.5711 -4.9548 16 1 2.8614 -5.7805 -5.1185 17 6 0.8468 -6.2972 -5.6352 18 7 1.2038 -7.1756 -6.5480 19 14 -0.9622 -6.0276 -5.2554 20 1 -1.4883 -4.9300 -6.1060 21 1 -1.7177 -7.2754 -5.5339 22 1 -1.1186 -5.6634 -3.8243 23 6 0.3270 -3.6856 -4.3927 24 6 0.8263 -2.2386 -4.2969 25 1 -0.3634 -1.0174 -0.1452 26 1 -0.3634 0.3828 0.9537 27 1 -0.3634 0.6344 -0.8084 28 1 1.7660 -0.1696 2.1365 29 1 1.6030 -1.7271 1.2890 30 1 3.9378 -1.3474 2.0649 31 1 4.0059 0.1462 1.0993 32 1 3.4983 -2.6527 -0.0089 33 1 5.0412 -1.7697 -0.1065 34 1 3.6518 -1.5687 -2.1994 35 1 3.9902 0.0041 -1.4318 36 1 3.4603 -2.8127 -3.4209 37 1 3.0109 -2.7692 -1.6960 38 1 1.4693 -4.6277 -1.9734 39 1 2.9964 -5.1055 -2.7567 40 1 0.5275 -7.6828 -7.0238 41 1 -0.4833 -3.8410 -3.6804 42 1 -0.0313 -3.8829 -5.4031 43 1 -0.0221 -1.5555 -4.3380 44 1 1.5060 -2.0280 -5.1225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594458427.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:23 Heat of formation + Delta-G solvation = 43.387704 kcal Electronic energy + Delta-G solvation = -24175.424205 eV Core-core repulsion = 20937.357090 eV Total energy + Delta-G solvation = -3238.067116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86904 -37.93821 -36.97749 -34.49604 -32.77717 -32.47390 -31.36737 -30.47489 -28.01356 -26.63460 -24.75988 -23.69307 -23.07650 -21.97788 -21.24571 -20.21396 -18.87841 -17.34429 -16.35471 -16.28190 -15.52529 -15.21412 -14.93693 -14.47494 -14.27845 -14.24031 -13.99060 -13.91452 -13.52408 -13.32502 -12.70217 -12.49860 -12.40926 -12.11803 -11.95474 -11.93538 -11.56104 -11.20173 -11.12795 -11.02880 -10.88369 -10.72005 -10.53183 -10.34370 -10.21777 -9.89052 -9.59614 -9.18916 -8.73748 -8.53727 -8.15194 -6.76242 -5.98870 -3.53043 2.79251 3.30487 3.30893 3.45792 3.49212 3.91940 4.48503 4.58226 4.63687 4.69810 4.89287 4.92798 5.14178 5.18135 5.28497 5.31447 5.43421 5.50237 5.55946 5.65547 5.69392 5.70528 5.73059 5.79203 5.83142 5.89632 5.91528 6.01384 6.07844 6.15892 6.24851 6.27278 6.43809 6.45800 6.56384 6.71946 6.78413 7.00535 7.24377 8.03426 8.18177 8.32856 8.83129 8.88714 9.65000 10.08410 11.15904 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027384 B = 0.005313 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.263966 B = 5268.769873 C = 5774.116503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.133 4.133 5 C -0.116 4.116 6 C -0.141 4.141 7 C 0.082 3.918 8 N -0.632 5.632 9 C 0.712 3.288 10 O -0.586 6.586 11 N -0.621 5.621 12 C 0.071 3.929 13 C 0.136 3.864 14 N -0.607 5.607 15 C -0.269 4.269 16 H 0.082 0.918 17 C 0.033 3.967 18 N -0.912 5.912 19 Si 0.894 3.106 20 H -0.285 1.285 21 H -0.303 1.303 22 H -0.267 1.267 23 C 0.111 3.889 24 C 0.115 3.885 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.025 0.975 39 H 0.074 0.926 40 H 0.264 0.736 41 H 0.033 0.967 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.306 13.771 14.519 20.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.060 3.940 3 H 0.084 0.916 4 C -0.172 4.172 5 C -0.154 4.154 6 C -0.179 4.179 7 C -0.041 4.041 8 N -0.371 5.371 9 C 0.416 3.584 10 O -0.464 6.464 11 N -0.359 5.359 12 C -0.053 4.053 13 C 0.009 3.991 14 N -0.331 5.331 15 C -0.397 4.397 16 H 0.099 0.901 17 C -0.168 4.168 18 N -0.554 5.554 19 Si 0.725 3.275 20 H -0.212 1.212 21 H -0.231 1.231 22 H -0.192 1.192 23 C -0.015 4.015 24 C -0.009 4.009 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.051 0.949 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.630 13.892 14.318 20.480 hybrid contribution -0.837 -0.043 0.080 0.842 sum 3.792 13.849 14.397 20.334 Atomic orbital electron populations 1.22153 0.92976 1.03913 1.01136 1.20981 0.95486 0.94493 0.83048 0.91611 1.22044 0.95979 1.01568 0.97585 1.21479 0.95780 1.00284 0.97858 1.22023 1.01258 0.99727 0.94930 1.22413 0.80763 1.00876 1.00002 1.47291 1.06134 1.61927 1.21767 1.15913 0.83600 0.79802 0.79070 1.90847 1.21571 1.60725 1.73306 1.47242 1.36259 1.31903 1.20461 1.23064 0.88940 0.92276 1.01029 1.21434 0.96344 0.92739 0.88543 1.44179 1.37161 1.35194 1.16565 1.18843 0.93559 1.09384 1.17951 0.90065 1.25562 0.98334 0.95087 0.97767 1.69740 1.33623 1.26181 1.25821 0.86798 0.85673 0.75908 0.79150 1.21231 1.23103 1.19231 1.21809 0.91262 0.88530 0.99868 1.22063 0.96591 0.99185 0.83106 0.92277 0.93637 0.89663 0.90998 0.91468 0.91781 0.91928 0.90963 0.90619 0.87041 0.92108 0.91539 0.88638 0.95704 0.90772 0.92612 0.94878 0.90443 0.90025 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 7.67 37.16 0.28 -1.64 16 2 C 0.16 1.92 3.48 -67.60 -0.24 1.68 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.13 -1.26 5.37 -26.61 -0.14 -1.40 16 5 C -0.12 -0.94 5.88 -26.68 -0.16 -1.09 16 6 C -0.14 -1.23 5.60 -26.61 -0.15 -1.38 16 7 C 0.08 0.87 5.39 -3.71 -0.02 0.85 16 8 N -0.63 -8.55 2.86 -170.91 -0.49 -9.04 16 9 C 0.71 12.30 7.36 -86.92 -0.64 11.66 16 10 O -0.59 -11.64 12.16 5.29 0.06 -11.57 16 11 N -0.62 -10.89 2.88 -178.55 -0.51 -11.41 16 12 C 0.07 1.10 4.51 -3.37 -0.02 1.08 16 13 C 0.14 2.61 6.69 -3.37 -0.02 2.59 16 14 N -0.61 -14.22 2.63 -171.76 -0.45 -14.68 16 15 C -0.27 -7.36 10.00 -15.06 -0.15 -7.51 16 16 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 17 C 0.03 0.94 5.42 -17.43 -0.09 0.84 16 18 N -0.91 -27.67 13.97 55.49 0.78 -26.90 16 19 Si 0.89 22.68 24.38 -169.99 -4.14 18.54 16 20 H -0.29 -6.99 6.72 56.52 0.38 -6.61 16 21 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 22 H -0.27 -6.76 6.15 56.52 0.35 -6.41 16 23 C 0.11 2.48 4.30 -3.59 -0.02 2.46 16 24 C 0.12 2.19 6.58 -3.59 -0.02 2.17 16 25 H 0.06 0.93 7.17 -51.93 -0.37 0.56 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.32 6.45 -51.93 -0.33 0.99 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.70 6.90 -51.93 -0.36 0.35 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.11 1.27 3.78 -52.72 -0.20 1.07 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.01 7.66 -51.93 -0.40 0.61 16 37 H 0.10 1.23 3.01 -51.93 -0.16 1.08 16 38 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.03 0.77 6.70 -51.93 -0.35 0.43 16 42 H 0.08 1.82 4.96 -51.93 -0.26 1.56 16 43 H 0.08 1.54 7.10 -51.93 -0.37 1.17 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 316.54 15.07 4.77 4.77 Total: -1.00 -31.98 316.54 -8.44 -40.41 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.07 Total: -0.46 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -1.38 Total: 10.32 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -0.68 Total: -62.02 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.06 Total: -11.57 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.14 Total: 18.54 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.98 -8.44 -40.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594458427.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.799 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds