Wall clock time and date at job start Tue Mar 31 2020 05:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00240 * 2 1 4 4 H 1.48500 * 109.47000 * 269.99795 * 3 2 1 5 5 H 1.48498 * 109.47069 * 29.99628 * 3 2 1 6 6 H 1.48494 * 109.47260 * 149.99988 * 3 2 1 7 7 C 1.37879 * 119.99634 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00219 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99774 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.46944 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99879 * 169.99427 * 10 9 7 12 12 C 1.53240 * 109.34173 * 187.25266 * 11 10 9 13 13 N 1.47084 * 108.51974 * 306.17183 * 12 11 10 14 14 C 1.34774 * 120.88086 * 231.18559 * 13 12 11 15 15 O 1.21588 * 120.00248 * 184.99143 * 14 13 12 16 16 N 1.34779 * 120.00203 * 4.99648 * 14 13 12 17 17 C 1.46499 * 120.00201 * 174.91827 * 16 14 13 18 18 C 1.53001 * 109.47194 * 180.02562 * 17 16 14 19 19 C 1.53779 * 113.61229 * 274.13898 * 18 17 16 20 20 C 1.53957 * 87.01838 * 220.04722 * 19 18 17 21 21 C 1.53770 * 113.61598 * 176.53006 * 18 17 16 22 22 C 1.47074 * 118.23797 * 51.45480 * 13 12 11 23 23 C 1.46898 * 111.00159 * 294.29602 * 10 9 7 24 24 H 0.97000 * 119.99867 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47793 * 59.99410 * 9 7 2 26 26 H 1.09008 * 109.46547 * 299.99369 * 9 7 2 27 27 H 1.09006 * 109.49338 * 67.29253 * 11 10 9 28 28 H 1.08999 * 109.49807 * 307.21377 * 11 10 9 29 29 H 1.09000 * 109.63101 * 186.46000 * 12 11 10 30 30 H 1.09000 * 109.62760 * 65.87739 * 12 11 10 31 31 H 0.97008 * 119.99672 * 354.92113 * 16 14 13 32 32 H 1.09003 * 109.46939 * 59.99950 * 17 16 14 33 33 H 1.09005 * 109.46815 * 299.99835 * 17 16 14 34 34 H 1.09005 * 112.84828 * 45.32644 * 18 17 16 35 35 H 1.08998 * 113.61616 * 334.56414 * 19 18 17 36 36 H 1.09004 * 113.61739 * 105.47180 * 19 18 17 37 37 H 1.09008 * 113.53826 * 270.80878 * 20 19 18 38 38 H 1.09000 * 113.66703 * 139.93399 * 20 19 18 39 39 H 1.09006 * 113.61848 * 254.52812 * 21 18 17 40 40 H 1.09006 * 113.61691 * 25.34683 * 21 18 17 41 41 H 1.09003 * 109.62937 * 68.24881 * 22 13 12 42 42 H 1.09001 * 109.63107 * 188.83141 * 22 13 12 43 43 H 1.09006 * 109.49126 * 292.70943 * 23 10 9 44 44 H 1.09004 * 109.49220 * 52.78509 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5792 0.0022 11 6 5.4500 -2.6255 -0.2355 12 6 5.8897 -4.0834 -0.4071 13 7 5.4257 -4.8516 0.7582 14 6 6.2756 -5.6309 1.4559 15 8 5.8578 -6.3289 2.3596 16 7 7.5886 -5.6366 1.1520 17 6 8.5288 -6.3965 1.9796 18 6 9.9445 -6.2355 1.4220 19 6 10.2853 -7.2387 0.3074 20 6 11.6810 -7.3525 0.9471 21 6 11.0233 -6.9284 2.2709 22 6 4.0085 -4.7515 1.1382 23 6 3.6440 -3.2628 1.2525 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6801 0.8910 26 1 3.8751 -0.6806 -0.8890 27 1 5.9722 -2.1857 0.6143 28 1 5.6885 -2.0649 -1.1393 29 1 6.9768 -4.1331 -0.4692 30 1 5.4491 -4.4942 -1.3155 31 1 7.9112 -5.1374 0.3853 32 1 8.2516 -7.4507 1.9696 33 1 8.4969 -6.0221 3.0028 34 1 10.1846 -5.2029 1.1685 35 1 9.7057 -8.1604 0.3573 36 1 10.2954 -6.7973 -0.6892 37 1 12.3967 -6.6258 0.5625 38 1 12.0744 -8.3689 0.9609 39 1 11.6285 -6.2369 2.8572 40 1 10.6456 -7.7643 2.8598 41 1 3.3905 -5.2252 0.3754 42 1 3.8511 -5.2431 2.0983 43 1 4.1914 -2.8140 2.0815 44 1 2.5727 -3.1642 1.4278 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594732423.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:05 Heat of formation + Delta-G solvation = -17.415117 kcal Electronic energy + Delta-G solvation = -22323.025198 eV Core-core repulsion = 19082.321475 eV Total energy + Delta-G solvation = -3240.703724 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.50294 -39.84704 -38.99216 -36.00202 -35.51416 -34.37340 -32.10557 -30.68203 -29.04154 -27.12368 -26.44911 -24.76578 -23.80084 -23.36908 -22.10273 -20.86588 -20.03070 -19.21313 -18.86304 -17.48256 -16.82211 -16.70681 -16.35953 -16.04833 -15.89717 -15.53527 -15.32709 -15.14966 -14.94557 -14.73743 -14.45857 -14.07398 -13.60627 -13.30002 -13.24209 -12.85926 -12.83436 -12.58491 -12.49733 -12.30590 -12.23182 -11.95681 -11.85971 -11.52532 -11.45741 -11.34681 -11.13740 -11.05474 -10.77099 -10.24971 -9.59545 -9.04932 -8.27321 -6.31026 1.35627 1.37564 1.47504 1.59105 2.08616 2.35062 2.87146 3.04916 3.15096 3.68788 3.73755 3.82552 3.94388 4.01766 4.04184 4.12331 4.23849 4.34667 4.41174 4.53192 4.54783 4.70294 4.73084 4.81772 4.84682 4.90480 4.91215 4.94811 5.00042 5.01557 5.11541 5.13639 5.14268 5.32245 5.42174 5.50405 5.52792 5.64873 5.85826 6.01916 6.27806 6.62281 6.75719 6.93859 7.32560 7.50563 8.89134 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034346 B = 0.003138 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.037014 B = 8921.820398 C = 9361.775305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.949 3.051 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.253 1.253 7 C -0.517 4.517 8 H 0.040 0.960 9 C 0.173 3.827 10 N -0.539 5.539 11 C 0.035 3.965 12 C 0.124 3.876 13 N -0.629 5.629 14 C 0.702 3.298 15 O -0.638 6.638 16 N -0.731 5.731 17 C 0.149 3.851 18 C -0.119 4.119 19 C -0.137 4.137 20 C -0.138 4.138 21 C -0.132 4.132 22 C 0.145 3.855 23 C 0.059 3.941 24 H 0.266 0.734 25 H -0.016 1.016 26 H 0.037 0.963 27 H 0.028 0.972 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.409 0.591 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.019 0.981 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.887 -11.057 -0.694 28.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.772 3.228 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.555 4.555 8 H 0.058 0.942 9 C 0.046 3.954 10 N -0.264 5.264 11 C -0.094 4.094 12 C 0.001 3.999 13 N -0.365 5.365 14 C 0.403 3.597 15 O -0.520 6.520 16 N -0.389 5.389 17 C 0.025 3.975 18 C -0.137 4.137 19 C -0.175 4.175 20 C -0.175 4.175 21 C -0.170 4.170 22 C 0.021 3.979 23 C -0.070 4.070 24 H 0.075 0.925 25 H 0.001 0.999 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.119 0.881 29 H 0.130 0.870 30 H 0.103 0.897 31 H 0.248 0.752 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.125 0.875 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.037 0.963 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 25.247 -11.694 -0.423 27.827 hybrid contribution -0.167 1.495 0.526 1.594 sum 25.079 -10.199 0.103 27.074 Atomic orbital electron populations 1.70053 1.08175 1.28094 1.52551 1.25858 0.95591 1.03193 0.94407 0.85697 0.79186 0.78570 0.79346 1.18616 1.21125 1.17651 1.21269 0.91099 0.93309 1.49871 0.94193 1.19937 0.94268 0.86046 0.95166 1.61793 1.13053 1.17107 1.34416 1.22607 0.87740 0.97363 1.01642 1.21895 1.00329 0.89697 0.87981 1.47408 1.09366 1.47791 1.31967 1.16041 0.81965 0.80167 0.81501 1.90862 1.77867 1.47339 1.35937 1.45153 1.04436 1.55112 1.34222 1.21272 0.87438 0.95190 0.93618 1.22825 0.91842 1.00754 0.98302 1.23033 0.97240 0.98989 0.98200 1.22836 0.96413 1.02263 0.96025 1.22894 0.96747 1.00470 0.96924 1.21526 0.80050 0.94952 1.01330 1.22326 1.00945 0.93667 0.90100 0.92468 0.99868 0.94456 0.95393 0.88107 0.86974 0.89737 0.75240 0.92687 0.93081 0.87482 0.90605 0.90572 0.89242 0.91034 0.90582 0.90053 0.90894 0.89915 0.96328 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.93 13.96 21.45 0.30 -58.64 16 2 C 0.01 0.39 5.47 84.66 0.46 0.85 16 3 Si 0.95 43.25 27.47 68.60 1.88 45.14 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.25 -10.77 6.54 99.48 0.65 -10.12 16 7 C -0.52 -29.36 8.96 25.60 0.23 -29.13 16 8 H 0.04 2.54 7.37 -2.91 -0.02 2.51 16 9 C 0.17 7.99 3.79 85.56 0.32 8.31 16 10 N -0.54 -21.18 4.62 -898.86 -4.15 -25.33 16 11 C 0.04 1.00 5.62 86.38 0.49 1.49 16 12 C 0.12 2.76 6.59 86.35 0.57 3.33 16 13 N -0.63 -18.17 3.00 -835.04 -2.51 -20.68 16 14 C 0.70 20.97 8.31 179.05 1.49 22.46 16 15 O -0.64 -24.54 15.83 -3.99 -0.06 -24.60 16 16 N -0.73 -14.97 5.47 -478.52 -2.62 -17.59 16 17 C 0.15 2.73 5.50 86.38 0.48 3.20 16 18 C -0.12 -1.35 3.75 -10.27 -0.04 -1.39 16 19 C -0.14 -1.41 7.65 31.18 0.24 -1.17 16 20 C -0.14 -1.20 8.09 31.18 0.25 -0.95 16 21 C -0.13 -1.34 7.64 31.12 0.24 -1.11 16 22 C 0.15 4.90 6.61 86.50 0.57 5.48 16 23 C 0.06 2.30 5.47 86.54 0.47 2.77 16 24 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 25 H -0.02 -0.77 7.18 -2.39 -0.02 -0.79 16 26 H 0.04 1.65 7.40 -2.38 -0.02 1.63 16 27 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.10 2.50 7.99 -2.39 -0.02 2.48 16 29 H 0.11 1.56 5.63 -2.39 -0.01 1.55 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.41 5.86 5.97 -92.70 -0.55 5.31 16 32 H 0.05 1.15 7.88 -2.39 -0.02 1.13 16 33 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.08 0.91 7.92 -2.39 -0.02 0.89 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.08 0.89 8.10 -2.38 -0.02 0.87 16 41 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.08 2.91 7.09 -2.39 -0.02 2.89 16 43 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.07 3.19 6.67 -2.39 -0.02 3.17 16 Total: -1.00 -72.80 343.48 -1.02 -73.82 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.37 Total: 13.74 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 5.77 Total: 14.14 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -8.98 Total: -122.23 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.06 Total: -24.60 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.88 Total: 45.14 kcal Total: -72.80 -1.02 -73.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594732423.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.404 kcal (2) G-P(sol) polarization free energy of solvation -72.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds