Wall clock time and date at job start Tue Mar 31 2020 05:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99784 * 2 1 4 4 H 1.48497 * 109.46993 * 240.00582 * 3 2 1 5 5 H 1.48492 * 109.47046 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46665 * 120.00635 * 3 2 1 7 7 C 1.37874 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00199 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00042 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47017 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99730 * 169.99874 * 10 9 7 12 12 C 1.53238 * 109.33901 * 187.25249 * 11 10 9 13 13 N 1.47080 * 108.52029 * 306.17037 * 12 11 10 14 14 C 1.34779 * 120.88118 * 231.18506 * 13 12 11 15 15 O 1.21576 * 120.00366 * 184.99655 * 14 13 12 16 16 N 1.34777 * 119.99845 * 4.99543 * 14 13 12 17 17 C 1.46504 * 120.00140 * 174.91600 * 16 14 13 18 18 C 1.54885 * 110.75317 * 154.99918 * 17 16 14 19 19 C 1.54268 * 104.30980 * 156.32975 * 18 17 16 20 20 C 1.53881 * 106.59899 * 336.32264 * 19 18 17 21 21 C 1.54273 * 106.59615 * 0.02562 * 20 19 18 22 22 C 1.47080 * 118.23772 * 51.45781 * 13 12 11 23 23 C 1.46894 * 110.99903 * 294.30036 * 10 9 7 24 24 H 0.96997 * 120.00357 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47083 * 60.00134 * 9 7 2 26 26 H 1.08999 * 109.46621 * 299.99861 * 9 7 2 27 27 H 1.09000 * 109.49182 * 67.29086 * 11 10 9 28 28 H 1.09001 * 109.49352 * 307.21166 * 11 10 9 29 29 H 1.09003 * 109.62993 * 186.45888 * 12 11 10 30 30 H 1.09004 * 109.62598 * 65.88042 * 12 11 10 31 31 H 0.96999 * 119.99904 * 354.92283 * 16 14 13 32 32 H 1.09005 * 110.81201 * 31.66935 * 17 16 14 33 33 H 1.09002 * 110.48824 * 37.58521 * 18 17 16 34 34 H 1.09002 * 110.49414 * 275.06912 * 18 17 16 35 35 H 1.09000 * 110.03913 * 95.61034 * 19 18 17 36 36 H 1.09007 * 110.03473 * 217.04400 * 19 18 17 37 37 H 1.08999 * 110.03343 * 119.28496 * 20 19 18 38 38 H 1.09003 * 110.03218 * 240.66836 * 20 19 18 39 39 H 1.08992 * 110.48248 * 142.28816 * 21 20 19 40 40 H 1.08999 * 110.48660 * 264.80064 * 21 20 19 41 41 H 1.08998 * 109.62520 * 68.25442 * 22 13 12 42 42 H 1.09001 * 109.62485 * 188.83407 * 22 13 12 43 43 H 1.09006 * 109.49409 * 292.70986 * 23 10 9 44 44 H 1.09000 * 109.49950 * 52.78750 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5213 -4.8935 0.2376 12 6 2.5639 -6.0032 0.4104 13 7 3.4616 -5.9862 -0.7545 14 6 3.7120 -7.1123 -1.4514 15 8 4.5257 -7.1001 -2.3546 16 7 3.0602 -8.2521 -1.1470 17 6 3.2486 -9.4468 -1.9737 18 6 2.9562 -10.7305 -1.1578 19 6 2.5945 -11.7856 -2.2235 20 6 2.1037 -11.0115 -3.4596 21 6 2.1848 -9.5130 -3.1020 22 6 4.0838 -4.7089 -1.1350 23 6 2.9767 -3.6491 -1.2504 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 0.8796 -5.1263 -0.6122 28 1 0.9161 -4.8191 1.1412 29 1 2.0633 -6.9694 0.4729 30 1 3.1395 -5.8264 1.3190 31 1 2.4664 -8.2813 -0.3806 32 1 4.2555 -9.4748 -2.3902 33 1 2.1175 -10.5693 -0.4805 34 1 3.8412 -11.0386 -0.6010 35 1 3.4745 -12.3762 -2.4780 36 1 1.8026 -12.4359 -1.8516 37 1 2.7455 -11.2264 -4.3139 38 1 1.0740 -11.2868 -3.6879 39 1 2.5078 -8.9318 -3.9655 40 1 1.2211 -9.1543 -2.7406 41 1 4.8028 -4.4103 -0.3721 42 1 4.5885 -4.8192 -2.0948 43 1 2.3148 -3.8992 -2.0796 44 1 3.4272 -2.6722 -1.4262 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594733276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:21 Heat of formation + Delta-G solvation = -26.675946 kcal Electronic energy + Delta-G solvation = -22568.523156 eV Core-core repulsion = 19327.417853 eV Total energy + Delta-G solvation = -3241.105303 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32367 -38.40702 -37.24435 -34.42278 -33.67479 -32.34772 -30.67180 -28.95960 -28.54638 -27.23403 -25.37631 -23.23561 -22.22790 -21.15119 -20.77992 -20.31022 -19.24393 -17.86474 -16.74118 -16.31670 -15.76329 -15.35177 -15.15775 -14.69459 -14.46452 -14.03819 -13.94066 -13.66825 -13.59112 -13.40799 -12.92583 -12.56992 -12.16766 -11.99870 -11.71617 -11.51747 -11.37387 -11.29025 -11.14875 -10.93690 -10.83045 -10.75206 -10.68485 -10.59070 -10.50476 -9.96581 -9.84205 -9.28984 -9.07826 -8.48008 -8.30936 -7.32518 -6.06192 -4.08076 2.74720 3.32156 3.32497 3.36429 3.39352 3.91075 4.32701 4.39220 4.42550 4.61464 4.78686 5.11305 5.19321 5.21516 5.24978 5.28784 5.30370 5.37176 5.38695 5.44671 5.56844 5.65009 5.66903 5.79319 5.83380 5.88195 5.96457 6.04119 6.05934 6.09720 6.19784 6.42773 6.55321 6.57060 6.71983 7.09279 7.21953 7.28254 7.74130 8.00552 8.04312 8.12889 8.47669 8.71620 8.99034 9.56539 11.04649 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038649 B = 0.003172 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.292628 B = 8824.377137 C = 9012.381402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.119 3.881 13 N -0.625 5.625 14 C 0.708 3.292 15 O -0.597 6.597 16 N -0.743 5.743 17 C 0.157 3.843 18 C -0.131 4.131 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.138 4.138 22 C 0.133 3.867 23 C 0.051 3.949 24 H 0.262 0.738 25 H -0.009 1.009 26 H 0.031 0.969 27 H 0.026 0.974 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.394 0.606 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.024 0.976 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 -21.433 -1.578 21.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.005 4.005 13 N -0.363 5.363 14 C 0.409 3.591 15 O -0.476 6.476 16 N -0.400 5.400 17 C 0.051 3.949 18 C -0.169 4.169 19 C -0.159 4.159 20 C -0.161 4.161 21 C -0.177 4.177 22 C 0.010 3.990 23 C -0.078 4.078 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.231 0.769 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.042 0.958 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.129 -21.200 -1.862 21.678 hybrid contribution -0.701 0.844 -0.200 1.115 sum 3.428 -20.356 -2.063 20.745 Atomic orbital electron populations 1.69944 1.06100 1.26976 1.50805 1.24988 0.94866 0.99362 0.95331 0.86545 0.79431 0.82654 0.78709 1.20209 1.21378 1.20125 1.21110 0.93490 0.89873 1.50382 0.91803 1.19719 0.89991 0.87219 0.96129 1.62077 1.27863 1.02439 1.33618 1.22379 0.94747 0.90980 1.00795 1.21760 0.91887 0.98153 0.88702 1.47420 1.49521 1.07948 1.31362 1.15850 0.80993 0.80305 0.81913 1.90873 1.37993 1.84581 1.34148 1.45263 1.50514 1.10566 1.33669 1.21852 1.00019 0.82566 0.90418 1.22616 1.01779 0.94583 0.97966 1.22057 1.01110 0.97539 0.95203 1.22076 1.01358 0.94770 0.97916 1.22839 0.99474 0.96193 0.99211 1.21827 0.95337 0.80555 1.01249 1.22452 0.95196 0.99205 0.90976 0.92822 0.99144 0.95092 0.95574 0.90153 0.91306 0.90649 0.76896 0.88486 0.91152 0.91040 0.91556 0.91553 0.91645 0.91695 0.91204 0.91384 0.91182 0.89397 0.95766 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -14.00 8.41 -34.44 -0.29 -14.29 16 8 H 0.06 1.72 7.13 -52.49 -0.37 1.35 16 9 C 0.19 4.93 4.72 -4.97 -0.02 4.91 16 10 N -0.53 -11.09 4.62 -235.47 -1.09 -12.18 16 11 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 12 C 0.12 1.59 6.59 -3.60 -0.02 1.57 16 13 N -0.63 -9.73 3.00 -177.91 -0.53 -10.26 16 14 C 0.71 11.19 8.31 -86.92 -0.72 10.47 16 15 O -0.60 -11.48 15.44 5.30 0.08 -11.40 16 16 N -0.74 -8.79 5.10 -56.56 -0.29 -9.08 16 17 C 0.16 1.65 3.32 -65.77 -0.22 1.43 16 18 C -0.13 -0.98 6.44 -25.07 -0.16 -1.15 16 19 C -0.12 -0.81 6.80 -25.61 -0.17 -0.99 16 20 C -0.12 -0.94 6.80 -25.61 -0.17 -1.12 16 21 C -0.14 -1.38 6.53 -24.90 -0.16 -1.54 16 22 C 0.13 2.24 6.61 -3.37 -0.02 2.22 16 23 C 0.05 0.99 5.47 -3.47 -0.02 0.97 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 26 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 1.28 7.99 -51.93 -0.41 0.86 16 29 H 0.07 0.69 5.63 -51.93 -0.29 0.40 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.39 3.78 6.06 -40.82 -0.25 3.53 16 32 H 0.10 1.20 7.49 -51.93 -0.39 0.81 16 33 H 0.07 0.47 8.02 -51.93 -0.42 0.06 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.09 1.50 7.09 -51.93 -0.37 1.13 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -31.77 343.45 -10.52 -42.29 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.47 Total: 0.14 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -2.11 Total: 4.60 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -1.17 Total: -57.18 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.08 Total: -11.40 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.77 -10.52 -42.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594733276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.610 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds