Wall clock time and date at job start Tue Mar 31 2020 05:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46632 * 2 1 4 4 N 1.46498 * 109.47294 * 120.00452 * 2 1 3 5 5 C 1.34777 * 119.99970 * 274.99830 * 4 2 1 6 6 O 1.21587 * 120.00073 * 354.71250 * 5 4 2 7 7 N 1.34767 * 120.00051 * 174.70830 * 5 4 2 8 8 C 1.47083 * 120.88207 * 184.71846 * 7 5 4 9 9 C 1.53702 * 108.27468 * 128.75413 * 8 7 5 10 10 N 1.46900 * 109.25463 * 54.08712 * 9 8 7 11 11 C 1.46906 * 110.99649 * 172.60761 * 10 9 8 12 12 C 1.50703 * 109.46766 * 294.29746 * 11 10 9 13 13 H 1.07994 * 120.00128 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99791 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99805 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00103 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47027 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47311 * 119.99815 * 16 14 12 19 19 H 1.48498 * 109.47071 * 239.99556 * 16 14 12 20 20 C 1.46896 * 111.26842 * 296.75222 * 10 9 8 21 21 C 1.47078 * 120.88358 * 4.99499 * 7 5 4 22 22 C 1.52996 * 109.46798 * 240.00480 * 2 1 3 23 23 C 1.53002 * 117.49690 * 128.74443 * 22 2 1 24 24 C 1.53002 * 117.49948 * 60.08692 * 22 2 1 25 25 H 1.09006 * 109.47148 * 299.99127 * 1 2 3 26 26 H 1.08991 * 109.47605 * 59.99663 * 1 2 3 27 27 H 1.09001 * 109.47060 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99671 * 94.72933 * 4 2 1 29 29 H 1.08997 * 109.62922 * 248.52442 * 8 7 5 30 30 H 1.09000 * 109.62867 * 9.10437 * 8 7 5 31 31 H 1.08996 * 109.65186 * 294.07744 * 9 8 7 32 32 H 1.09001 * 109.42034 * 173.94757 * 9 8 7 33 33 H 1.08996 * 109.47085 * 54.29657 * 11 10 9 34 34 H 1.08998 * 109.46780 * 174.30026 * 11 10 9 35 35 H 0.97001 * 119.99425 * 179.97438 * 15 14 12 36 36 H 1.09004 * 109.49533 * 303.14937 * 20 10 9 37 37 H 1.08996 * 109.49404 * 183.06941 * 20 10 9 38 38 H 1.09005 * 109.62833 * 350.89993 * 21 7 5 39 39 H 1.09001 * 109.63039 * 111.47511 * 21 7 5 40 40 H 1.08998 * 115.55161 * 274.41115 * 22 2 1 41 41 H 1.08996 * 117.50173 * 359.97438 * 23 22 2 42 42 H 1.09005 * 117.50250 * 145.02153 * 23 22 2 43 43 H 1.09008 * 117.49856 * 214.97503 * 24 22 2 44 44 H 1.08999 * 117.50173 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1472 -0.0184 2.3571 6 8 1.9506 1.1810 2.3901 7 7 2.4937 -0.6756 3.4815 8 6 2.5396 0.0180 4.7777 9 6 1.7195 -0.7975 5.7900 10 7 2.2115 -2.1815 5.8091 11 6 1.5748 -2.9518 6.8859 12 6 1.9985 -2.3944 8.2204 13 1 2.6729 -1.5520 8.2643 14 6 1.5251 -2.9599 9.3854 15 7 0.7033 -3.9854 9.3319 16 14 2.0496 -2.2686 11.0395 17 1 2.9712 -1.1236 10.8277 18 1 0.8514 -1.8086 11.7863 19 1 2.7438 -3.3245 11.8196 20 6 2.0158 -2.8347 4.5080 21 6 2.8419 -2.1041 3.4441 22 6 2.0399 -0.7211 -1.2493 23 6 3.0762 0.0042 -2.1101 24 6 1.6373 -0.1481 -2.6096 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 2.2454 -1.6328 1.1534 29 1 3.5730 0.0944 5.1157 30 1 2.1103 1.0147 4.6750 31 1 0.6684 -0.7891 5.5019 32 1 1.8287 -0.3590 6.7819 33 1 0.4912 -2.8822 6.7905 34 1 1.8795 -3.9958 6.8149 35 1 0.3706 -4.3834 10.1515 36 1 0.9605 -2.7979 4.2376 37 1 2.3397 -3.8735 4.5701 38 1 2.6127 -2.5112 2.4592 39 1 3.9038 -2.2279 3.6564 40 1 2.1253 -1.8045 -1.1648 41 1 3.3943 0.9952 -1.7867 42 1 3.8431 -0.6020 -2.5924 43 1 1.4581 -0.8545 -3.4203 44 1 1.0088 0.7424 -2.6146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594733474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:21 Heat of formation + Delta-G solvation = 7.841342 kcal Electronic energy + Delta-G solvation = -22504.574695 eV Core-core repulsion = 19264.966174 eV Total energy + Delta-G solvation = -3239.608521 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32779 -38.41752 -37.33469 -34.49733 -34.30303 -32.39811 -30.93148 -29.95420 -27.99337 -25.55480 -24.45857 -23.13929 -22.60253 -22.10448 -20.84119 -20.53586 -19.15112 -17.88873 -16.85910 -16.33444 -15.53103 -15.32137 -14.85982 -14.64572 -14.50555 -14.26010 -13.84396 -13.75682 -13.56079 -13.45975 -12.93799 -12.51367 -12.30207 -12.12433 -11.97300 -11.70856 -11.29967 -11.16302 -11.02106 -10.84653 -10.80834 -10.71954 -10.58754 -10.50914 -10.42345 -9.94985 -9.84034 -9.26435 -9.10384 -8.48739 -8.30727 -7.32199 -6.06596 -4.08187 2.71089 3.29515 3.31652 3.37211 3.41962 3.48660 3.94277 4.30228 4.39471 4.59385 4.66605 4.79623 4.92411 5.15090 5.22010 5.28658 5.30024 5.31989 5.37408 5.43719 5.49795 5.57685 5.66383 5.73471 5.80009 5.83586 5.87654 5.99243 6.05230 6.11833 6.20250 6.43245 6.55152 6.57332 6.71861 7.09523 7.22120 7.28350 7.74691 8.00665 8.04777 8.12933 8.47710 8.72068 8.99579 9.56532 11.04331 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.041558 B = 0.003132 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.601787 B = 8937.373864 C = 9130.491908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.190 3.810 3 H 0.088 0.912 4 N -0.744 5.744 5 C 0.709 3.291 6 O -0.598 6.598 7 N -0.625 5.625 8 C 0.133 3.867 9 C 0.051 3.949 10 N -0.535 5.535 11 C 0.194 3.806 12 C -0.508 4.508 13 H 0.065 0.935 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.041 3.959 21 C 0.119 3.881 22 C -0.163 4.163 23 C -0.177 4.177 24 C -0.170 4.170 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.394 0.606 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.024 0.976 32 H 0.097 0.903 33 H -0.009 1.009 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.026 0.974 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 4.281 -21.425 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.085 3.915 3 H 0.106 0.894 4 N -0.401 5.401 5 C 0.410 3.590 6 O -0.477 6.477 7 N -0.362 5.362 8 C 0.010 3.990 9 C -0.078 4.078 10 N -0.260 5.260 11 C 0.069 3.931 12 C -0.547 4.547 13 H 0.083 0.917 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.089 4.089 21 C -0.005 4.005 22 C -0.182 4.182 23 C -0.214 4.214 24 C -0.207 4.207 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.231 0.769 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.042 0.958 32 H 0.115 0.885 33 H 0.009 0.991 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.764 5.056 -21.171 21.941 hybrid contribution -0.601 -0.508 0.793 1.117 sum 2.162 4.547 -20.378 20.990 Atomic orbital electron populations 1.22172 0.95256 1.02175 1.02351 1.20266 0.93526 0.96394 0.81313 0.89392 1.45313 1.72350 1.13573 1.08894 1.15815 0.77862 0.84994 0.80303 1.90875 1.59070 1.12690 1.85036 1.47408 1.71337 1.10488 1.06984 1.21827 1.00985 0.95940 0.80204 1.22454 0.95316 0.90480 0.99583 1.62080 1.59319 1.01868 1.02729 1.19730 0.92062 0.93346 0.87995 1.21186 1.27724 1.15881 0.89874 0.91695 1.24998 0.95123 0.95076 0.99435 1.69971 1.32725 1.23102 1.28010 0.86434 0.78350 0.79015 0.83596 1.19580 1.21114 1.21019 1.22379 0.97197 0.98386 0.90939 1.21756 1.00277 0.80180 0.98277 1.22478 1.04661 0.99457 0.91626 1.23068 0.92475 1.02229 1.03579 1.22950 0.98255 1.03288 0.96251 0.91981 0.91765 0.92483 0.76943 0.91190 0.89398 0.95761 0.88508 0.99141 0.95080 0.92948 0.95571 0.90164 0.91297 0.90667 0.87474 0.88534 0.88720 0.88558 0.88449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.33 37.16 0.35 -1.28 16 2 C 0.19 1.99 2.85 -67.93 -0.19 1.80 16 3 H 0.09 1.09 7.26 -51.93 -0.38 0.71 16 4 N -0.74 -8.81 4.99 -58.68 -0.29 -9.10 16 5 C 0.71 11.17 8.27 -86.93 -0.72 10.45 16 6 O -0.60 -11.42 15.45 5.29 0.08 -11.34 16 7 N -0.63 -9.72 3.00 -177.91 -0.53 -10.25 16 8 C 0.13 2.24 6.61 -3.36 -0.02 2.22 16 9 C 0.05 0.99 5.47 -3.46 -0.02 0.97 16 10 N -0.53 -11.08 4.62 -235.46 -1.09 -12.17 16 11 C 0.19 4.91 4.72 -4.97 -0.02 4.88 16 12 C -0.51 -13.94 8.41 -34.44 -0.29 -14.23 16 13 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 14 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 16 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 21 C 0.12 1.60 6.59 -3.61 -0.02 1.57 16 22 C -0.16 -1.28 5.34 -90.62 -0.48 -1.76 16 23 C -0.18 -1.29 10.18 -26.69 -0.27 -1.56 16 24 C -0.17 -1.12 9.74 -26.69 -0.26 -1.38 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.54 7.29 -51.93 -0.38 0.16 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.39 3.81 6.05 -40.82 -0.25 3.57 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.09 1.50 7.09 -51.93 -0.37 1.13 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 33 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 34 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 1.28 7.99 -51.93 -0.41 0.86 16 38 H 0.07 0.70 5.63 -51.93 -0.29 0.41 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.11 0.75 8.07 -51.93 -0.42 0.33 16 41 H 0.10 0.76 8.05 -51.93 -0.42 0.34 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 44 H 0.10 0.62 7.61 -51.93 -0.40 0.23 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -31.80 349.18 -10.32 -42.12 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.38 Total: 0.98 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -2.08 Total: 3.78 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -1.18 Total: -57.16 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.80 -10.32 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594733474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.958 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds