Wall clock time and date at job start Tue Mar 31 2020 05:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47173 * 2 1 4 4 N 1.46501 * 109.46930 * 239.99783 * 2 1 3 5 5 C 1.34779 * 119.99918 * 85.00269 * 4 2 1 6 6 O 1.21586 * 119.99931 * 354.92214 * 5 4 2 7 7 N 1.34771 * 120.00050 * 174.91912 * 5 4 2 8 8 C 1.47083 * 120.88190 * 184.71704 * 7 5 4 9 9 C 1.53692 * 108.27495 * 128.75801 * 8 7 5 10 10 N 1.46906 * 109.25930 * 54.08261 * 9 8 7 11 11 C 1.46903 * 111.00002 * 172.60409 * 10 9 8 12 12 C 1.50700 * 109.47384 * 294.30318 * 11 10 9 13 13 H 1.07996 * 119.99869 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99983 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99981 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99940 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46631 * 89.99959 * 16 14 12 18 18 H 1.48498 * 109.46918 * 209.99851 * 16 14 12 19 19 H 1.48493 * 109.46973 * 330.00021 * 16 14 12 20 20 C 1.46892 * 111.26696 * 296.75392 * 10 9 8 21 21 C 1.47087 * 120.88251 * 4.99633 * 7 5 4 22 22 C 1.52996 * 109.46971 * 120.00068 * 2 1 3 23 23 C 1.52999 * 117.51761 * 231.28541 * 22 2 1 24 24 C 1.52995 * 60.00197 * 107.47989 * 23 22 2 25 25 H 1.08994 * 109.47277 * 300.00184 * 1 2 3 26 26 H 1.09001 * 109.47144 * 59.99840 * 1 2 3 27 27 H 1.08996 * 109.47173 * 179.97438 * 1 2 3 28 28 H 0.97001 * 120.00225 * 264.99460 * 4 2 1 29 29 H 1.08997 * 109.62673 * 248.52259 * 8 7 5 30 30 H 1.08998 * 109.62910 * 9.10396 * 8 7 5 31 31 H 1.08996 * 109.65058 * 294.07914 * 9 8 7 32 32 H 1.09007 * 109.42026 * 173.94675 * 9 8 7 33 33 H 1.09006 * 109.47046 * 54.30488 * 11 10 9 34 34 H 1.08993 * 109.46972 * 174.29871 * 11 10 9 35 35 H 0.96999 * 119.99801 * 179.97438 * 15 14 12 36 36 H 1.09001 * 109.49841 * 303.14734 * 20 10 9 37 37 H 1.09006 * 109.49100 * 183.06393 * 20 10 9 38 38 H 1.09004 * 109.62387 * 350.89530 * 21 7 5 39 39 H 1.08999 * 109.62430 * 111.47035 * 21 7 5 40 40 H 1.09001 * 115.55426 * 85.58104 * 22 2 1 41 41 H 1.09002 * 117.50194 * 214.96895 * 23 22 2 42 42 H 1.09001 * 117.49705 * 359.97438 * 23 22 2 43 43 H 1.09001 * 117.50034 * 252.50813 * 24 23 22 44 44 H 1.09000 * 117.49609 * 107.49141 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.7717 1.1355 -2.4363 7 7 2.6918 -0.6249 -3.4303 8 6 2.9362 0.1195 -4.6751 9 6 4.3953 -0.1141 -5.0978 10 7 4.6512 -1.5584 -5.1780 11 6 5.9788 -1.8270 -5.7466 12 6 6.0126 -1.3692 -7.1820 13 1 5.1357 -0.9229 -7.6272 14 6 7.1630 -1.5201 -7.9268 15 7 8.2310 -2.0631 -7.3845 16 14 7.2047 -0.9531 -9.7063 17 1 7.6493 0.4626 -9.7644 18 1 8.1515 -1.8013 -10.4739 19 1 5.8464 -1.0700 -10.2949 20 6 4.5012 -2.1999 -3.8651 21 6 3.0521 -2.0504 -3.3898 22 6 2.0399 -0.7213 1.2492 23 6 3.0757 0.0038 2.1108 24 6 1.6373 -0.1483 2.6096 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 2.2491 -1.6318 -1.1526 29 1 2.2641 -0.2396 -5.4544 30 1 2.7687 1.1830 -4.5046 31 1 5.0656 0.3339 -4.3642 32 1 4.5672 0.3406 -6.0735 33 1 6.7346 -1.2879 -5.1754 34 1 6.1838 -2.8966 -5.7015 35 1 9.0402 -2.1696 -7.9086 36 1 5.1700 -1.7229 -3.1486 37 1 4.7499 -3.2580 -3.9467 38 1 2.9612 -2.4221 -2.3692 39 1 2.3908 -2.6139 -4.0480 40 1 2.1252 -1.8046 1.1648 41 1 3.8424 -0.6025 2.5932 42 1 3.3943 0.9948 1.7875 43 1 1.0095 0.7427 2.6146 44 1 1.4578 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594733475.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:23 Heat of formation + Delta-G solvation = 7.903710 kcal Electronic energy + Delta-G solvation = -22520.015200 eV Core-core repulsion = 19280.409383 eV Total energy + Delta-G solvation = -3239.605817 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32608 -38.41302 -37.33286 -34.48749 -34.30495 -32.39833 -30.92920 -29.95919 -27.98835 -25.54535 -24.46218 -23.13463 -22.57807 -22.11043 -20.83250 -20.55297 -19.13888 -17.87847 -16.85934 -16.33314 -15.54975 -15.29462 -14.85064 -14.65103 -14.48420 -14.20553 -13.96270 -13.71410 -13.57322 -13.41988 -12.98962 -12.43048 -12.32402 -12.12320 -11.97339 -11.69289 -11.28986 -11.16967 -11.02462 -10.82165 -10.80935 -10.71752 -10.61028 -10.50234 -10.41135 -9.94958 -9.83319 -9.26903 -9.11271 -8.48479 -8.30238 -7.31989 -6.06244 -4.07965 2.70933 3.30591 3.32592 3.36962 3.41191 3.49413 3.94620 4.31541 4.39546 4.61045 4.68385 4.79191 4.93157 5.14672 5.22966 5.28468 5.29523 5.33549 5.37528 5.43613 5.49750 5.60311 5.66291 5.73554 5.82187 5.83285 5.88475 5.99167 6.05156 6.11441 6.20391 6.43326 6.55082 6.57366 6.71940 7.09544 7.22273 7.28524 7.74616 8.00855 8.04947 8.13167 8.47938 8.72121 8.99466 9.56702 11.04637 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034563 B = 0.003252 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.931794 B = 8608.835592 C = 8985.876764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.192 3.808 3 H 0.085 0.915 4 N -0.744 5.744 5 C 0.708 3.292 6 O -0.597 6.597 7 N -0.625 5.625 8 C 0.133 3.867 9 C 0.051 3.949 10 N -0.535 5.535 11 C 0.194 3.806 12 C -0.509 4.509 13 H 0.064 0.936 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.272 1.272 20 C 0.041 3.959 21 C 0.119 3.881 22 C -0.164 4.164 23 C -0.176 4.176 24 C -0.170 4.170 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.394 0.606 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.024 0.976 32 H 0.097 0.903 33 H -0.009 1.009 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.026 0.974 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.792 0.357 17.448 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.087 3.913 3 H 0.103 0.897 4 N -0.401 5.401 5 C 0.410 3.590 6 O -0.476 6.476 7 N -0.362 5.362 8 C 0.011 3.989 9 C -0.078 4.078 10 N -0.260 5.260 11 C 0.069 3.931 12 C -0.548 4.548 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.197 1.197 20 C -0.089 4.089 21 C -0.005 4.005 22 C -0.183 4.183 23 C -0.213 4.213 24 C -0.207 4.207 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.231 0.769 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.042 0.958 32 H 0.115 0.885 33 H 0.009 0.991 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.205 0.957 17.022 21.564 hybrid contribution 1.030 -0.073 -0.367 1.096 sum -12.175 0.884 16.654 20.649 Atomic orbital electron populations 1.22156 0.95248 1.02024 1.02406 1.20253 0.93615 0.96161 0.81300 0.89663 1.45321 1.72273 1.13715 1.08831 1.15820 0.78520 0.84491 0.80170 1.90877 1.56234 1.16749 1.83750 1.47411 1.64868 1.10952 1.13006 1.21824 0.96894 0.96685 0.83547 1.22454 0.93531 0.90195 1.01656 1.62077 1.34526 1.09698 1.19698 1.19723 0.82017 0.96801 0.94554 1.21146 0.97810 1.39876 0.95924 0.91753 1.24992 0.95521 0.95389 0.98680 1.69957 1.02540 1.44423 1.36889 0.86493 0.77963 0.78479 0.84475 1.20707 1.21270 1.19706 1.22378 0.94221 1.00323 0.91977 1.21758 0.97222 0.81368 1.00135 1.22482 1.04756 0.99468 0.91601 1.23061 0.92488 1.02269 1.03516 1.22934 0.98317 1.03250 0.96209 0.91877 0.91776 0.92604 0.76949 0.91195 0.89398 0.95761 0.88517 0.99150 0.95082 0.92890 0.95556 0.90169 0.91295 0.90675 0.87465 0.88657 0.88533 0.88472 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.33 37.16 0.35 -1.19 16 2 C 0.19 2.01 2.77 -67.93 -0.19 1.82 16 3 H 0.09 1.07 7.41 -51.93 -0.39 0.69 16 4 N -0.74 -8.81 4.99 -58.68 -0.29 -9.10 16 5 C 0.71 11.15 8.27 -86.92 -0.72 10.44 16 6 O -0.60 -11.38 15.49 5.29 0.08 -11.29 16 7 N -0.63 -9.72 3.00 -177.91 -0.53 -10.25 16 8 C 0.13 2.24 6.61 -3.36 -0.02 2.22 16 9 C 0.05 0.99 5.47 -3.46 -0.02 0.97 16 10 N -0.53 -11.09 4.62 -235.47 -1.09 -12.18 16 11 C 0.19 4.92 4.72 -4.97 -0.02 4.90 16 12 C -0.51 -13.97 8.41 -34.44 -0.29 -14.26 16 13 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 14 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 16 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 C 0.04 0.68 5.62 -3.71 -0.02 0.66 16 21 C 0.12 1.60 6.59 -3.60 -0.02 1.57 16 22 C -0.16 -1.32 5.34 -90.62 -0.48 -1.80 16 23 C -0.18 -1.39 10.18 -26.73 -0.27 -1.66 16 24 C -0.17 -1.15 9.73 -26.73 -0.26 -1.41 16 25 H 0.06 0.50 7.29 -51.93 -0.38 0.13 16 26 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.39 3.81 6.05 -40.82 -0.25 3.57 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.09 1.50 7.09 -51.93 -0.37 1.13 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 1.99 6.67 -51.92 -0.35 1.65 16 33 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 34 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 1.28 7.99 -51.93 -0.41 0.86 16 38 H 0.07 0.70 5.63 -51.93 -0.29 0.41 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.11 0.77 8.07 -51.93 -0.42 0.35 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 43 H 0.10 0.63 7.61 -51.93 -0.40 0.24 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 349.23 15.07 5.26 5.26 Total: -1.00 -31.76 349.23 -10.32 -42.08 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.39 Total: 1.06 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -2.07 Total: 3.71 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -1.18 Total: -57.18 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.76 -10.32 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594733475.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.983 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds