Wall clock time and date at job start Tue Mar 31 2020 05:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 120.00166 * 2 1 4 4 H 1.48494 * 109.47406 * 271.38172 * 3 2 1 5 5 H 1.48503 * 109.46840 * 31.38239 * 3 2 1 6 6 H 1.48494 * 109.46821 * 151.37735 * 3 2 1 7 7 C 1.37876 * 119.99552 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00140 * 358.76315 * 7 2 1 9 9 C 1.50699 * 119.99634 * 178.76525 * 7 2 1 10 10 C 1.53000 * 115.54936 * 86.79934 * 9 7 2 11 11 N 1.46506 * 109.47160 * 64.84254 * 10 9 7 12 12 C 1.34779 * 119.99939 * 185.07825 * 11 10 9 13 13 O 1.21588 * 119.99927 * 355.17666 * 12 11 10 14 14 N 1.34776 * 119.99490 * 175.18512 * 12 11 10 15 15 C 1.46501 * 119.99287 * 185.04752 * 14 12 11 16 16 C 1.53003 * 109.46570 * 179.97438 * 15 14 12 17 17 N 1.46902 * 110.02008 * 58.61085 * 16 15 14 18 18 C 1.54263 * 110.03248 * 297.16418 * 16 15 14 19 19 C 1.54892 * 104.19704 * 217.10430 * 18 16 15 20 20 C 1.54892 * 102.74788 * 37.94542 * 19 18 16 21 21 C 1.53878 * 110.03046 * 180.02562 * 16 15 14 22 22 C 1.52996 * 117.50074 * 232.46919 * 9 7 2 23 23 C 1.52998 * 117.50177 * 301.12907 * 9 7 2 24 24 H 0.97005 * 119.99719 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47310 * 304.84400 * 10 9 7 26 26 H 1.09002 * 109.47315 * 184.83987 * 10 9 7 27 27 H 0.96999 * 119.99630 * 5.34320 * 11 10 9 28 28 H 0.96996 * 120.00680 * 5.04580 * 14 12 11 29 29 H 1.08996 * 109.47285 * 299.99275 * 15 14 12 30 30 H 1.09000 * 109.47263 * 60.00342 * 15 14 12 31 31 H 1.00905 * 110.99820 * 300.70041 * 17 16 15 32 32 H 1.00896 * 110.99654 * 64.65083 * 17 16 15 33 33 H 1.08993 * 110.49112 * 335.78794 * 18 16 15 34 34 H 1.09007 * 110.48317 * 98.43314 * 18 16 15 35 35 H 1.08996 * 110.76299 * 279.63228 * 19 18 16 36 36 H 1.08997 * 110.91787 * 156.33013 * 19 18 16 37 37 H 1.08992 * 110.48720 * 203.37606 * 20 19 18 38 38 H 1.09004 * 110.48619 * 80.72934 * 20 19 18 39 39 H 1.09000 * 110.03336 * 238.56926 * 21 16 15 40 40 H 1.09002 * 110.03616 * 359.97438 * 21 16 15 41 41 H 1.09004 * 117.50109 * 215.00568 * 22 9 7 42 42 H 1.08996 * 117.49781 * 0.02578 * 22 9 7 43 43 H 1.09002 * 117.49646 * 359.97438 * 23 9 7 44 44 H 1.09004 * 117.49998 * 144.96923 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4676 2.0633 -1.3996 5 1 1.4616 2.6440 0.7291 6 1 3.5610 1.4318 0.6707 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 0.0192 9 6 3.5112 -1.1943 -0.0287 10 6 4.1967 -1.1030 1.3362 11 7 3.8919 -2.3046 2.1170 12 6 4.3061 -2.4001 3.3960 13 8 5.0068 -1.5294 3.8748 14 7 3.9436 -3.4610 4.1442 15 6 4.3001 -3.5117 5.5642 16 6 3.7731 -4.8112 6.1761 17 7 4.3383 -5.9667 5.4666 18 6 2.2327 -4.8447 6.0997 19 6 1.8014 -5.5246 7.4229 20 6 2.8108 -4.9498 8.4474 21 6 4.1401 -4.8777 7.6690 22 6 4.1975 -2.0321 -1.1093 23 6 4.1958 -0.5048 -1.2105 24 1 -0.4850 0.8401 0.0004 25 1 3.8336 -0.2230 1.8670 26 1 5.2749 -1.0242 1.1967 27 1 3.3954 -3.0330 1.7123 28 1 3.4468 -4.1908 3.7425 29 1 5.3845 -3.4744 5.6682 30 1 3.8560 -2.6609 6.0810 31 1 4.0964 -5.9434 4.4873 32 1 5.3385 -6.0134 5.5909 33 1 1.8315 -3.8329 6.0423 34 1 1.9060 -5.4348 5.2434 35 1 1.8991 -6.6078 7.3504 36 1 0.7813 -5.2473 7.6884 37 1 2.9059 -5.6164 9.3044 38 1 2.5030 -3.9548 8.7691 39 1 4.7373 -5.7677 7.8675 40 1 4.6941 -3.9844 7.9575 41 1 5.1374 -2.5184 -0.8479 42 1 3.5593 -2.5829 -1.8001 43 1 3.5564 -0.0514 -1.9679 44 1 5.1344 0.0142 -1.0156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595262909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:53 Heat of formation + Delta-G solvation = -18.035520 kcal Electronic energy + Delta-G solvation = -22558.515763 eV Core-core repulsion = 19317.785137 eV Total energy + Delta-G solvation = -3240.730626 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.98501 -38.78615 -37.11247 -34.46723 -33.41717 -32.27084 -32.12282 -29.00345 -28.26595 -26.53569 -25.27002 -23.98066 -21.76406 -21.14622 -20.25371 -19.40160 -19.27790 -17.83772 -16.79823 -16.20928 -15.57685 -15.51866 -15.22213 -15.00531 -14.79522 -14.19351 -14.07337 -13.64021 -13.32100 -13.17844 -12.95436 -12.76036 -12.40956 -12.03562 -11.65018 -11.30722 -11.25766 -11.18514 -11.16203 -10.99615 -10.77242 -10.69771 -10.53023 -10.19338 -9.86404 -9.61742 -9.20153 -8.98531 -8.92650 -8.65273 -8.60454 -8.17553 -6.16807 -4.21231 3.04738 3.28151 3.38531 3.44567 3.66510 4.24397 4.32538 4.39392 4.41103 4.64433 4.67535 5.00269 5.01633 5.12875 5.19167 5.29408 5.41317 5.52169 5.64245 5.67635 5.73570 5.75009 5.83651 5.89601 5.94988 6.00538 6.01217 6.05846 6.22423 6.25136 6.40350 6.46818 6.63601 6.68029 6.97432 6.99194 7.06755 7.15479 7.19354 7.36682 7.66932 8.39782 8.50216 8.82891 9.05454 9.46489 10.94527 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022922 B = 0.003914 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.253023 B = 7151.461073 C = 7542.045521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.080 3.920 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.256 1.256 7 C -0.489 4.489 8 H 0.077 0.923 9 C -0.015 4.015 10 C 0.175 3.825 11 N -0.719 5.719 12 C 0.701 3.299 13 O -0.604 6.604 14 N -0.752 5.752 15 C 0.115 3.885 16 C 0.104 3.896 17 N -0.831 5.831 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.111 4.111 22 C -0.179 4.179 23 C -0.192 4.192 24 H 0.265 0.735 25 H 0.063 0.937 26 H 0.039 0.961 27 H 0.399 0.601 28 H 0.392 0.608 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.339 0.661 32 H 0.341 0.659 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.030 -11.256 11.848 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.123 4.123 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.526 4.526 8 H 0.095 0.905 9 C -0.017 4.017 10 C 0.051 3.949 11 N -0.371 5.371 12 C 0.400 3.600 13 O -0.483 6.483 14 N -0.409 5.409 15 C -0.012 4.012 16 C 0.011 3.989 17 N -0.362 5.362 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.160 4.160 21 C -0.149 4.149 22 C -0.216 4.216 23 C -0.230 4.230 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.232 0.768 28 H 0.226 0.774 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.026 -10.732 12.770 18.100 hybrid contribution 0.428 1.105 -1.067 1.595 sum 7.454 -9.626 11.703 16.888 Atomic orbital electron populations 1.69888 1.06380 1.27241 1.49733 1.24959 0.94578 0.99138 0.93606 0.86866 0.80831 0.83317 0.78393 1.20407 1.22033 1.18065 1.20163 0.86025 0.94458 1.51945 0.90476 1.19630 0.95368 1.00707 0.85975 1.21015 0.96452 0.85998 0.91439 1.44980 1.59526 1.21989 1.10631 1.16000 0.80456 0.82061 0.81458 1.90872 1.42776 1.41731 1.72942 1.45037 1.62721 1.22975 1.10186 1.22011 0.99888 0.98624 0.80651 1.21757 0.95447 0.87413 0.94285 1.59112 1.17317 1.42933 1.16806 1.22428 0.92910 1.01219 0.98575 1.22412 0.98367 1.00326 0.94426 1.22312 0.94833 1.00984 0.97870 1.22150 0.98189 1.02313 0.92269 1.22837 1.01034 0.92938 1.04780 1.22952 1.01425 0.95098 1.03547 0.92501 0.91857 0.94245 0.76761 0.77423 0.92063 0.91488 0.84740 0.84629 0.90839 0.91061 0.91161 0.91786 0.91683 0.91641 0.90613 0.91435 0.90916 0.89425 0.89138 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 13.96 55.43 0.77 -25.71 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.50 24.88 -169.99 -4.23 17.27 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.26 -6.07 5.74 56.52 0.32 -5.74 16 7 C -0.49 -12.78 9.29 -34.44 -0.32 -13.10 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 9 C -0.02 -0.34 0.81 -155.66 -0.13 -0.47 16 10 C 0.18 3.73 5.12 -4.04 -0.02 3.71 16 11 N -0.72 -13.42 5.46 -65.22 -0.36 -13.78 16 12 C 0.70 12.96 8.55 -86.92 -0.74 12.22 16 13 O -0.60 -13.53 16.36 5.29 0.09 -13.44 16 14 N -0.75 -10.19 5.11 -65.22 -0.33 -10.53 16 15 C 0.12 1.40 4.42 -4.04 -0.02 1.38 16 16 C 0.10 0.97 0.86 -130.48 -0.11 0.86 16 17 N -0.83 -7.04 8.75 1.65 0.01 -7.03 16 18 C -0.11 -1.11 5.53 -25.07 -0.14 -1.25 16 19 C -0.12 -1.03 6.91 -24.74 -0.17 -1.20 16 20 C -0.12 -0.99 6.83 -25.10 -0.17 -1.17 16 21 C -0.11 -0.94 6.20 -25.64 -0.16 -1.10 16 22 C -0.18 -3.39 9.96 -26.70 -0.27 -3.65 16 23 C -0.19 -3.93 7.60 -26.70 -0.20 -4.13 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.06 1.52 6.66 -51.93 -0.35 1.17 16 26 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 27 H 0.40 6.76 8.47 -40.82 -0.35 6.41 16 28 H 0.39 4.41 7.10 -40.82 -0.29 4.12 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.92 8.12 -51.93 -0.42 0.49 16 31 H 0.34 2.79 7.62 -39.29 -0.30 2.49 16 32 H 0.34 2.65 9.01 -39.29 -0.35 2.30 16 33 H 0.07 0.81 7.83 -51.93 -0.41 0.41 16 34 H 0.07 0.70 8.02 -51.92 -0.42 0.28 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.61 7.91 -51.93 -0.41 0.20 16 40 H 0.07 0.56 7.67 -51.93 -0.40 0.17 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 43 H 0.09 1.94 7.27 -51.93 -0.38 1.56 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -31.09 347.29 -8.86 -39.95 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -7.50 Total: 13.79 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -2.55 Total: -5.77 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.10 Total: -57.04 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.44 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.23 Total: 17.27 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.09 -8.86 -39.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595262909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.918 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds