Wall clock time and date at job start Tue Mar 31 2020 05:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99735 * 2 1 4 4 O 1.20819 * 120.00420 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99714 * 179.97438 * 3 2 1 6 6 H 1.08996 * 110.45263 * 29.34870 * 5 3 2 7 7 C 1.56194 * 110.48675 * 151.84425 * 5 3 2 8 8 H 1.09004 * 116.48575 * 318.31384 * 7 5 3 9 9 C 1.55930 * 104.55857 * 188.97113 * 7 5 3 10 10 C 1.54589 * 104.63771 * 289.71365 * 9 7 5 11 11 C 1.55922 * 104.64560 * 359.97438 * 10 9 7 12 12 H 1.08997 * 116.52875 * 199.60564 * 11 10 9 13 13 C 1.56945 * 100.64464 * 84.89640 * 7 5 3 14 14 C 1.54577 * 110.40083 * 266.95898 * 5 3 2 15 15 H 1.09000 * 110.40542 * 122.42256 * 14 5 3 16 16 N 1.46901 * 110.40713 * 0.11438 * 14 5 3 17 17 C 1.46894 * 111.00153 * 166.66877 * 16 14 5 18 18 C 1.53004 * 109.46952 * 184.54762 * 17 16 14 19 19 C 1.53003 * 109.46939 * 179.97438 * 18 17 16 20 20 C 1.50696 * 109.47085 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00045 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00339 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00268 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47184 * 90.00427 * 24 22 20 26 26 H 1.48501 * 109.47347 * 209.99972 * 24 22 20 27 27 H 1.48502 * 109.47188 * 329.99996 * 24 22 20 28 28 H 1.09005 * 109.47125 * 59.99792 * 1 2 3 29 29 H 1.08995 * 109.47172 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46808 * 300.00161 * 1 2 3 31 31 H 1.08996 * 110.40746 * 48.50142 * 9 7 5 32 32 H 1.08997 * 110.40352 * 170.92720 * 9 7 5 33 33 H 1.09003 * 110.39786 * 241.20885 * 10 9 7 34 34 H 1.09001 * 110.40051 * 118.79282 * 10 9 7 35 35 H 1.08994 * 112.03051 * 296.89049 * 13 7 5 36 36 H 1.08998 * 112.09275 * 170.38704 * 13 7 5 37 37 H 1.00905 * 110.99428 * 42.71307 * 16 14 5 38 38 H 1.08998 * 109.47492 * 304.54319 * 17 16 14 39 39 H 1.08997 * 109.47675 * 64.54701 * 17 16 14 40 40 H 1.08995 * 109.47244 * 299.99613 * 18 17 16 41 41 H 1.08998 * 109.47143 * 60.00462 * 18 17 16 42 42 H 1.08995 * 109.47519 * 300.00166 * 19 18 17 43 43 H 1.09005 * 109.47001 * 60.00438 * 19 18 17 44 44 H 0.96996 * 120.00187 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9934 0.4058 -0.4996 7 6 4.0450 2.5916 -0.6899 8 1 3.5169 2.8843 -1.5975 9 6 5.5896 2.4248 -0.8238 10 6 6.1207 2.5284 0.6243 11 6 4.8471 2.7486 1.4965 12 1 5.0038 3.1708 2.4891 13 6 3.9648 3.5958 0.5136 14 6 4.0998 1.3802 1.4476 15 1 4.7893 0.5628 1.6588 16 7 2.9865 1.3703 2.4059 17 6 3.4723 1.1517 3.7749 18 6 2.2799 1.0347 4.7265 19 6 2.7859 0.8064 6.1523 20 6 1.6115 0.6917 7.0897 21 1 0.6050 0.7731 6.7068 22 6 1.8220 0.4829 8.4362 23 7 3.0477 0.3843 8.9026 24 14 0.3663 0.3401 9.5980 25 1 -0.0509 -1.0817 9.6964 26 1 0.7556 0.8357 10.9427 27 1 -0.7630 1.1527 9.0788 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 5.8312 1.4505 -1.2484 32 1 6.0059 3.2224 -1.4391 33 1 6.7982 3.3768 0.7207 34 1 6.6234 1.6049 0.9115 35 1 2.9450 3.7151 0.8792 36 1 4.4234 4.5560 0.2776 37 1 2.2971 0.6786 2.1521 38 1 4.0571 0.2326 3.8106 39 1 4.0973 1.9919 4.0772 40 1 1.6951 1.9537 4.6910 41 1 1.6550 0.1943 4.4243 42 1 3.3705 -0.1128 6.1876 43 1 3.4111 1.6465 6.4549 44 1 3.1958 0.2371 9.8498 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595904064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:29 Heat of formation + Delta-G solvation = -97.197562 kcal Electronic energy + Delta-G solvation = -22903.779634 eV Core-core repulsion = 19627.323533 eV Total energy + Delta-G solvation = -3276.456101 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.35524 -39.42782 -36.33807 -35.84460 -33.38584 -31.54641 -30.42584 -28.55579 -28.08106 -27.25744 -25.63531 -23.16304 -22.52131 -20.78638 -20.25261 -19.74234 -18.76685 -17.66590 -16.92749 -16.49041 -16.15396 -15.76618 -15.42342 -14.98009 -14.52652 -14.37216 -13.86889 -13.53243 -13.20004 -13.03604 -12.40239 -12.22641 -12.10155 -11.75574 -11.61304 -11.50231 -11.33128 -11.22228 -11.03561 -10.95845 -10.81336 -10.80048 -10.66638 -10.52582 -10.46950 -10.38418 -10.13321 -9.67817 -9.31933 -9.03536 -8.32468 -8.20465 -5.97621 -3.99532 2.24297 2.68000 3.33566 3.39651 3.43748 4.13194 4.16918 4.35860 4.48187 4.60493 4.85261 4.85429 5.05987 5.06641 5.13152 5.15918 5.20983 5.22675 5.36316 5.38259 5.45580 5.52308 5.67671 5.75549 5.79745 5.85118 5.88020 5.96584 6.03065 6.08540 6.25964 6.31665 6.35747 6.50518 6.71694 6.77290 7.14017 7.30951 7.52865 7.70477 7.80566 7.85464 8.02779 8.46279 9.07484 9.64347 11.13868 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019979 B = 0.003880 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.125727 B = 7214.334918 C = 8217.343678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.473 3.527 4 O -0.488 6.488 5 C -0.084 4.084 6 H 0.101 0.899 7 C -0.083 4.083 8 H 0.102 0.898 9 C -0.121 4.121 10 C -0.125 4.125 11 C -0.089 4.089 12 H 0.106 0.894 13 C -0.118 4.118 14 C 0.098 3.902 15 H 0.055 0.945 16 N -0.684 5.684 17 C 0.061 3.939 18 C -0.108 4.108 19 C 0.023 3.977 20 C -0.518 4.518 21 H 0.054 0.946 22 C 0.056 3.944 23 N -0.897 5.897 24 Si 0.891 3.109 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.334 0.666 38 H 0.026 0.974 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.014 0.986 43 H 0.016 0.984 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.740 1.507 -22.457 22.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.315 3.685 4 O -0.373 6.373 5 C -0.104 4.104 6 H 0.119 0.881 7 C -0.101 4.101 8 H 0.120 0.880 9 C -0.158 4.158 10 C -0.163 4.163 11 C -0.108 4.108 12 H 0.124 0.876 13 C -0.155 4.155 14 C -0.012 4.012 15 H 0.073 0.927 16 N -0.317 5.317 17 C -0.067 4.067 18 C -0.146 4.146 19 C -0.014 4.014 20 C -0.557 4.557 21 H 0.073 0.927 22 C -0.145 4.145 23 N -0.536 5.536 24 Si 0.719 3.281 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.154 0.846 38 H 0.044 0.956 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.032 0.968 43 H 0.035 0.965 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.583 2.447 -22.229 22.649 hybrid contribution -0.750 -1.187 0.730 1.583 sum 2.833 1.259 -21.499 21.722 Atomic orbital electron populations 1.23251 0.76345 1.03571 1.02676 1.86523 1.23534 1.33967 1.84419 1.23345 0.91491 0.81401 0.72306 1.90635 1.66732 1.36092 1.43887 1.22495 0.87670 1.01140 0.99095 0.88091 1.23491 0.95375 0.92934 0.98299 0.88035 1.22654 0.94336 1.01708 0.97150 1.22666 0.97305 1.01802 0.94537 1.23585 0.93753 0.94583 0.98839 0.87590 1.23613 1.01632 0.96533 0.93737 1.22653 0.92540 0.97780 0.88260 0.92712 1.60700 1.13064 1.55167 1.02802 1.22153 0.98576 0.99346 0.86599 1.21643 0.95752 1.00578 0.96637 1.19052 0.96487 0.96895 0.88999 1.21254 0.93048 1.48941 0.92428 0.92731 1.25020 0.95622 0.95448 0.98378 1.69965 1.19612 1.50058 1.13984 0.86602 0.82921 0.78243 0.80294 1.20717 1.21220 1.19858 0.92190 0.88293 0.91412 0.91659 0.91273 0.91400 0.91632 0.88964 0.91509 0.84648 0.95562 0.91127 0.92543 0.93853 0.96804 0.96514 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.42 16 2 O -0.37 -4.55 10.13 -39.26 -0.40 -4.95 16 3 C 0.47 6.26 4.97 36.01 0.18 6.44 16 4 O -0.49 -7.62 14.69 -18.74 -0.28 -7.90 16 5 C -0.08 -0.94 2.83 -89.23 -0.25 -1.19 16 6 H 0.10 0.94 7.84 -51.93 -0.41 0.53 16 7 C -0.08 -0.83 4.24 -85.21 -0.36 -1.19 16 8 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 9 C -0.12 -0.98 6.21 -24.33 -0.15 -1.13 16 10 C -0.13 -1.14 6.21 -24.33 -0.15 -1.29 16 11 C -0.09 -1.03 4.64 -85.34 -0.40 -1.43 16 12 H 0.11 1.35 7.38 -51.93 -0.38 0.96 16 13 C -0.12 -1.38 6.24 -22.47 -0.14 -1.52 16 14 C 0.10 1.23 2.50 -65.28 -0.16 1.07 16 15 H 0.06 0.67 7.63 -51.93 -0.40 0.28 16 16 N -0.68 -10.58 5.70 -104.17 -0.59 -11.17 16 17 C 0.06 1.08 5.54 -3.83 -0.02 1.06 16 18 C -0.11 -2.31 5.37 -26.73 -0.14 -2.45 16 19 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 20 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 21 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 24 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 27 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 31 H 0.06 0.47 7.84 -51.93 -0.41 0.06 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.58 7.83 -51.93 -0.41 0.17 16 35 H 0.09 1.35 6.77 -51.93 -0.35 1.00 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.33 5.25 6.57 -39.29 -0.26 4.99 16 38 H 0.03 0.46 8.02 -51.93 -0.42 0.04 16 39 H 0.07 1.25 7.32 -51.93 -0.38 0.87 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -31.82 346.31 -9.01 -40.83 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.60 Total: 1.07 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -1.08 Total: -13.51 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.14 Total: -37.73 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.67 Total: -12.85 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.82 -9.01 -40.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595904064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.363 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds