Wall clock time and date at job start Tue Mar 31 2020 05:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99735 * 2 1 4 4 O 1.20819 * 120.00420 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99714 * 179.97438 * 3 2 1 6 6 H 1.08996 * 110.45263 * 29.34870 * 5 3 2 7 7 C 1.56194 * 110.48675 * 151.84425 * 5 3 2 8 8 H 1.09004 * 116.48575 * 318.31384 * 7 5 3 9 9 C 1.55930 * 104.55857 * 188.97113 * 7 5 3 10 10 C 1.54589 * 104.63771 * 289.71365 * 9 7 5 11 11 C 1.55922 * 104.64560 * 359.97438 * 10 9 7 12 12 H 1.08997 * 116.52875 * 199.60564 * 11 10 9 13 13 C 1.56945 * 100.64464 * 84.89640 * 7 5 3 14 14 C 1.54577 * 110.40083 * 266.95898 * 5 3 2 15 15 H 1.09000 * 110.40542 * 122.42256 * 14 5 3 16 16 N 1.46901 * 110.40713 * 0.11438 * 14 5 3 17 17 C 1.46894 * 111.00153 * 166.66877 * 16 14 5 18 18 C 1.53004 * 109.46952 * 184.54762 * 17 16 14 19 19 C 1.53003 * 109.46939 * 179.97438 * 18 17 16 20 20 C 1.50696 * 109.47085 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00045 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00339 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99926 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00268 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47184 * 90.00427 * 24 22 20 26 26 H 1.48501 * 109.47347 * 209.99972 * 24 22 20 27 27 H 1.48502 * 109.47188 * 329.99996 * 24 22 20 28 28 H 1.09005 * 109.47125 * 59.99792 * 1 2 3 29 29 H 1.08995 * 109.47172 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46808 * 300.00161 * 1 2 3 31 31 H 1.08996 * 110.40746 * 48.50142 * 9 7 5 32 32 H 1.08997 * 110.40352 * 170.92720 * 9 7 5 33 33 H 1.09003 * 110.39786 * 241.20885 * 10 9 7 34 34 H 1.09001 * 110.40051 * 118.79282 * 10 9 7 35 35 H 1.08994 * 112.03051 * 296.89049 * 13 7 5 36 36 H 1.08998 * 112.09275 * 170.38704 * 13 7 5 37 37 H 1.00905 * 110.99428 * 42.71307 * 16 14 5 38 38 H 1.08998 * 109.47492 * 304.54319 * 17 16 14 39 39 H 1.08997 * 109.47675 * 64.54701 * 17 16 14 40 40 H 1.08995 * 109.47244 * 299.99613 * 18 17 16 41 41 H 1.08998 * 109.47143 * 60.00462 * 18 17 16 42 42 H 1.08995 * 109.47519 * 300.00166 * 19 18 17 43 43 H 1.09005 * 109.47001 * 60.00438 * 19 18 17 44 44 H 0.96996 * 120.00187 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9934 0.4058 -0.4996 7 6 4.0450 2.5916 -0.6899 8 1 3.5169 2.8843 -1.5975 9 6 5.5896 2.4248 -0.8238 10 6 6.1207 2.5284 0.6243 11 6 4.8471 2.7486 1.4965 12 1 5.0038 3.1708 2.4891 13 6 3.9648 3.5958 0.5136 14 6 4.0998 1.3802 1.4476 15 1 4.7893 0.5628 1.6588 16 7 2.9865 1.3703 2.4059 17 6 3.4723 1.1517 3.7749 18 6 2.2799 1.0347 4.7265 19 6 2.7859 0.8064 6.1523 20 6 1.6115 0.6917 7.0897 21 1 0.6050 0.7731 6.7068 22 6 1.8220 0.4829 8.4362 23 7 3.0477 0.3843 8.9026 24 14 0.3663 0.3401 9.5980 25 1 -0.0509 -1.0817 9.6964 26 1 0.7556 0.8357 10.9427 27 1 -0.7630 1.1527 9.0788 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 5.8312 1.4505 -1.2484 32 1 6.0059 3.2224 -1.4391 33 1 6.7982 3.3768 0.7207 34 1 6.6234 1.6049 0.9115 35 1 2.9450 3.7151 0.8792 36 1 4.4234 4.5560 0.2776 37 1 2.2971 0.6786 2.1521 38 1 4.0571 0.2326 3.8106 39 1 4.0973 1.9919 4.0772 40 1 1.6951 1.9537 4.6910 41 1 1.6550 0.1943 4.4243 42 1 3.3705 -0.1128 6.1876 43 1 3.4111 1.6465 6.4549 44 1 3.1958 0.2371 9.8498 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595904064.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:29 Heat of formation + Delta-G solvation = -115.790315 kcal Electronic energy + Delta-G solvation = -22904.585876 eV Core-core repulsion = 19627.323533 eV Total energy + Delta-G solvation = -3277.262344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.30389 -40.36361 -37.45170 -37.22360 -35.31567 -33.19350 -31.54886 -29.61885 -28.96878 -28.32579 -27.26107 -24.49739 -23.94623 -22.07296 -21.60039 -20.73519 -19.64650 -18.67182 -18.51872 -17.88547 -17.38504 -16.78298 -16.54965 -16.43524 -15.89104 -15.67885 -15.28479 -14.59430 -14.33960 -14.17857 -14.00808 -13.71727 -13.43451 -13.06724 -12.86987 -12.66321 -12.59804 -12.44736 -12.32820 -12.14407 -12.05354 -11.90480 -11.84655 -11.74711 -11.58709 -11.53814 -11.39997 -11.24247 -11.15452 -10.97149 -10.56891 -9.44401 -8.21720 -6.32832 1.22161 1.38506 1.40079 1.51443 1.79269 2.39641 3.02381 3.11294 3.31262 3.49031 3.69484 3.95791 3.98473 4.18782 4.24792 4.27954 4.30381 4.32986 4.35467 4.38044 4.47834 4.62879 4.63165 4.66192 4.72299 4.81781 4.94848 5.03115 5.06650 5.08398 5.17685 5.20076 5.24770 5.29264 5.38083 5.48482 5.48917 5.55503 5.71089 5.82911 5.98448 6.24902 6.26370 6.81103 6.83170 7.36320 8.90217 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019979 B = 0.003880 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.125727 B = 7214.334918 C = 8217.343678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.371 6.371 3 C 0.470 3.530 4 O -0.519 6.519 5 C -0.082 4.082 6 H 0.128 0.872 7 C -0.077 4.077 8 H 0.107 0.893 9 C -0.112 4.112 10 C -0.119 4.119 11 C -0.096 4.096 12 H 0.088 0.912 13 C -0.120 4.120 14 C 0.094 3.906 15 H 0.064 0.936 16 N -0.690 5.690 17 C 0.077 3.923 18 C -0.093 4.093 19 C 0.028 3.972 20 C -0.545 4.545 21 H 0.056 0.944 22 C 0.001 3.999 23 N -0.932 5.932 24 Si 0.965 3.035 25 H -0.270 1.270 26 H -0.280 1.280 27 H -0.266 1.266 28 H 0.066 0.934 29 H 0.127 0.873 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.332 0.668 38 H 0.029 0.971 39 H 0.067 0.933 40 H 0.046 0.954 41 H 0.045 0.955 42 H -0.006 1.006 43 H -0.007 1.007 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.930 0.880 -23.844 24.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C 0.313 3.687 4 O -0.406 6.406 5 C -0.102 4.102 6 H 0.145 0.855 7 C -0.095 4.095 8 H 0.125 0.875 9 C -0.149 4.149 10 C -0.157 4.157 11 C -0.115 4.115 12 H 0.106 0.894 13 C -0.158 4.158 14 C -0.016 4.016 15 H 0.082 0.918 16 N -0.323 5.323 17 C -0.052 4.052 18 C -0.131 4.131 19 C -0.009 4.009 20 C -0.583 4.583 21 H 0.074 0.926 22 C -0.197 4.197 23 N -0.572 5.572 24 Si 0.789 3.211 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.190 1.190 28 H 0.085 0.915 29 H 0.145 0.855 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.151 0.849 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.012 0.988 43 H 0.011 0.989 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.776 1.811 -23.638 24.006 hybrid contribution -0.832 -0.985 1.166 1.739 sum 2.944 0.825 -22.472 22.679 Atomic orbital electron populations 1.23462 0.75290 1.05358 1.02272 1.86522 1.24687 1.33569 1.84044 1.23811 0.92351 0.81148 0.71353 1.90625 1.67578 1.37058 1.45341 1.22623 0.86282 1.02966 0.98295 0.85453 1.23514 0.97060 0.91395 0.97522 0.87485 1.22636 0.92262 1.03383 0.96601 1.22645 0.95962 1.02543 0.94527 1.23591 0.95380 0.93921 0.98568 0.89373 1.23558 0.99669 0.97774 0.94788 1.22805 0.91738 0.98655 0.88364 0.91803 1.60641 1.14311 1.55127 1.02201 1.21839 0.96665 0.99361 0.87329 1.21388 0.96970 1.00018 0.94752 1.18935 0.95417 0.94822 0.91751 1.21672 0.93756 1.49388 0.93524 0.92589 1.25962 0.98740 0.94720 1.00228 1.70087 1.21907 1.50564 1.14655 0.85453 0.79124 0.78743 0.77770 1.19566 1.20507 1.19017 0.91527 0.85454 0.92927 0.89876 0.89699 0.90494 0.90992 0.92481 0.90401 0.84862 0.95256 0.91465 0.93535 0.93584 0.98779 0.98872 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.77 16 2 O -0.37 -8.81 10.13 -51.43 -0.52 -9.33 16 3 C 0.47 12.11 4.97 71.24 0.35 12.46 16 4 O -0.52 -16.32 14.69 21.98 0.32 -15.99 16 5 C -0.08 -1.68 2.83 -9.89 -0.03 -1.71 16 6 H 0.13 1.94 7.84 -2.39 -0.02 1.93 16 7 C -0.08 -1.37 4.24 -7.29 -0.03 -1.40 16 8 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 9 C -0.11 -1.42 6.21 32.15 0.20 -1.22 16 10 C -0.12 -1.85 6.21 32.15 0.20 -1.65 16 11 C -0.10 -2.15 4.64 -7.37 -0.03 -2.18 16 12 H 0.09 2.28 7.38 -2.39 -0.02 2.26 16 13 C -0.12 -2.75 6.24 33.35 0.21 -2.54 16 14 C 0.09 2.26 2.50 46.49 0.12 2.37 16 15 H 0.06 1.44 7.63 -2.39 -0.02 1.43 16 16 N -0.69 -21.38 5.70 -483.49 -2.76 -24.14 16 17 C 0.08 2.75 5.54 86.31 0.48 3.23 16 18 C -0.09 -4.09 5.37 30.60 0.16 -3.92 16 19 C 0.03 1.55 4.97 29.85 0.15 1.69 16 20 C -0.55 -32.11 9.11 25.60 0.23 -31.88 16 21 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 22 C 0.00 0.08 5.46 84.65 0.46 0.54 16 23 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 24 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 26 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 28 H 0.07 1.19 8.13 -2.38 -0.02 1.17 16 29 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.05 1.17 8.13 -2.38 -0.02 1.15 16 31 H 0.08 0.82 7.84 -2.39 -0.02 0.80 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.05 7.83 -2.39 -0.02 1.03 16 35 H 0.06 1.72 6.77 -2.39 -0.02 1.70 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.33 10.42 6.57 -89.69 -0.59 9.83 16 38 H 0.03 1.03 8.02 -2.39 -0.02 1.01 16 39 H 0.07 2.45 7.32 -2.39 -0.02 2.43 16 40 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 42 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H -0.01 -0.42 8.14 -2.38 -0.02 -0.43 16 44 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -69.54 346.31 3.41 -66.14 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.38 Total: 17.82 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 3.67 Total: -24.44 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -2.47 Total: -81.36 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.20 Total: -25.33 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.54 3.41 -66.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595904064.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.653 kcal (2) G-P(sol) polarization free energy of solvation -69.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds