Wall clock time and date at job start Tue Mar 31 2020 05:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47113 * 2 1 4 4 N 1.46502 * 109.46894 * 184.81515 * 3 2 1 5 5 N 1.40086 * 126.03633 * 274.84062 * 4 3 2 6 6 C 1.30842 * 108.20625 * 179.85782 * 5 4 3 7 7 C 1.39874 * 108.20073 * 0.40696 * 6 5 4 8 8 C 1.34950 * 126.03812 * 95.15685 * 4 3 2 9 9 C 1.50700 * 126.12436 * 359.95649 * 8 4 3 10 10 N 1.46892 * 109.47430 * 85.31616 * 9 8 4 11 11 C 1.46903 * 111.00175 * 75.58066 * 10 9 8 12 12 C 1.50703 * 109.46873 * 67.37274 * 11 10 9 13 13 H 1.08000 * 119.99841 * 3.36135 * 12 11 10 14 14 C 1.37873 * 119.99920 * 183.36686 * 12 11 10 15 15 N 1.31516 * 119.99976 * 5.20359 * 14 12 11 16 16 Si 1.86801 * 119.99955 * 185.20472 * 14 12 11 17 17 H 1.48500 * 109.47042 * 5.00586 * 16 14 12 18 18 H 1.48502 * 109.47347 * 125.00452 * 16 14 12 19 19 H 1.48503 * 109.47323 * 245.00445 * 16 14 12 20 20 C 1.46902 * 111.00140 * 199.53765 * 10 9 8 21 21 C 1.52998 * 109.47200 * 162.83125 * 20 10 9 22 22 O 1.42902 * 109.47159 * 66.11390 * 21 20 10 23 23 C 1.42902 * 114.00010 * 175.00553 * 22 21 20 24 24 H 1.09002 * 109.47082 * 175.13494 * 1 2 3 25 25 H 1.08992 * 109.47009 * 295.13705 * 1 2 3 26 26 H 1.09001 * 109.46967 * 55.13712 * 1 2 3 27 27 H 1.08996 * 109.47676 * 120.00481 * 2 1 3 28 28 H 1.09005 * 109.47168 * 240.00282 * 2 1 3 29 29 H 1.08995 * 109.47300 * 304.81726 * 3 2 1 30 30 H 1.09002 * 109.46828 * 64.81930 * 3 2 1 31 31 H 1.07996 * 125.90195 * 180.14278 * 6 5 4 32 32 H 1.07995 * 126.04370 * 179.74139 * 7 6 5 33 33 H 1.09002 * 109.46555 * 205.31869 * 9 8 4 34 34 H 1.09001 * 109.46743 * 325.31094 * 9 8 4 35 35 H 1.08998 * 109.47549 * 187.36920 * 11 10 9 36 36 H 1.09003 * 109.46786 * 307.37553 * 11 10 9 37 37 H 0.97005 * 119.99840 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.46514 * 282.83150 * 20 10 9 39 39 H 1.08995 * 109.47140 * 42.82569 * 20 10 9 40 40 H 1.09003 * 109.46828 * 186.11131 * 21 20 10 41 41 H 1.09000 * 109.47268 * 306.11437 * 21 20 10 42 42 H 1.09001 * 109.47419 * 184.84485 * 23 22 21 43 43 H 1.08999 * 109.46661 * 304.84197 * 23 22 21 44 44 H 1.08999 * 109.47561 * 64.83915 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5004 1.4441 -0.1159 5 7 4.4112 1.3178 0.9409 6 6 5.6213 1.3611 0.4452 7 6 5.5202 1.5254 -0.9402 8 6 4.2060 1.5734 -1.2590 9 6 3.6329 1.7409 -2.6427 10 7 3.3526 3.1618 -2.8880 11 6 4.5919 3.9050 -3.1519 12 6 5.1791 3.4528 -4.4641 13 1 4.6538 2.7294 -5.0700 14 6 6.3868 3.9626 -4.8911 15 7 7.0757 4.7643 -4.1085 16 14 7.0447 3.5147 -6.5810 17 1 6.0341 2.7038 -7.3066 18 1 7.3268 4.7551 -7.3472 19 1 8.2961 2.7290 -6.4329 20 6 2.3949 3.3269 -3.9897 21 6 1.8033 4.7372 -3.9441 22 8 2.8293 5.6933 -4.2185 23 6 2.3594 7.0396 -4.3117 24 1 -0.3633 -1.0240 -0.0872 25 1 -0.3633 0.4365 0.9303 26 1 -0.3633 0.5874 -0.8432 27 1 1.8934 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.6080 1.9807 -0.8436 30 1 1.7489 1.9308 0.9300 31 1 6.5396 1.2873 1.0088 32 1 6.3452 1.6006 -1.6330 33 1 4.3506 1.3796 -3.3793 34 1 2.7088 1.1687 -2.7248 35 1 4.3727 4.9716 -3.2003 36 1 5.3061 3.7168 -2.3502 37 1 7.9253 5.1232 -4.4091 38 1 2.9061 3.1779 -4.9407 39 1 1.5948 2.5938 -3.8885 40 1 1.0154 4.8250 -4.6921 41 1 1.3872 4.9248 -2.9542 42 1 3.1816 7.6919 -4.6061 43 1 1.5658 7.0966 -5.0566 44 1 1.9724 7.3572 -3.3435 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596996335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:13 Heat of formation + Delta-G solvation = 34.777934 kcal Electronic energy + Delta-G solvation = -23269.706654 eV Core-core repulsion = 20031.266191 eV Total energy + Delta-G solvation = -3238.440463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65694 -37.76376 -35.99409 -35.19239 -32.38293 -31.29407 -30.53181 -28.68132 -26.91615 -25.98099 -25.68132 -24.25158 -22.57298 -21.91733 -20.41334 -20.01409 -18.95213 -16.59917 -16.13721 -15.86502 -15.52832 -15.21159 -14.79971 -14.56093 -14.21207 -13.89485 -13.71634 -13.67511 -13.10598 -12.85047 -12.66397 -12.18994 -12.01398 -11.96577 -11.79074 -11.43474 -11.36779 -11.09419 -10.87751 -10.82009 -10.73439 -10.72657 -10.58407 -10.07500 -9.93482 -9.78851 -9.47686 -8.96963 -8.69262 -8.21018 -7.85429 -7.18245 -5.88388 -3.92328 2.45106 3.02540 3.33384 3.41724 3.43522 3.48137 4.46404 4.51632 4.78376 4.87239 4.97880 5.11939 5.23560 5.43820 5.45682 5.54710 5.57363 5.60452 5.63342 5.68134 5.76606 5.83586 5.87566 5.88900 5.98726 6.04823 6.11696 6.13371 6.22403 6.32284 6.42904 6.52176 6.72583 6.90894 7.30415 7.35246 7.65164 7.74725 7.86944 8.09348 8.14937 8.31794 8.36611 8.45484 9.15118 9.70225 11.18054 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014023 B = 0.006073 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.230243 B = 4609.103331 C = 5706.758292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.137 3.863 4 N -0.366 5.366 5 N -0.316 5.316 6 C 0.040 3.960 7 C -0.259 4.259 8 C 0.118 3.882 9 C 0.114 3.886 10 N -0.535 5.535 11 C 0.180 3.820 12 C -0.533 4.533 13 H 0.052 0.948 14 C 0.069 3.931 15 N -0.888 5.888 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.054 3.946 21 C 0.073 3.927 22 O -0.350 6.350 23 C 0.030 3.970 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.175 0.825 32 H 0.148 0.852 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.035 0.965 37 H 0.258 0.742 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.029 0.971 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.182 -4.958 4.416 13.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.015 3.985 4 N -0.149 5.149 5 N -0.138 5.138 6 C -0.145 4.145 7 C -0.289 4.289 8 C -0.010 4.010 9 C -0.015 4.015 10 N -0.260 5.260 11 C 0.055 3.945 12 C -0.572 4.572 13 H 0.070 0.930 14 C -0.133 4.133 15 N -0.527 5.527 16 Si 0.709 3.291 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.074 4.074 21 C -0.004 4.004 22 O -0.268 6.268 23 C -0.067 4.067 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.192 0.808 32 H 0.165 0.835 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.047 0.953 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -12.885 -4.811 5.902 14.967 hybrid contribution 1.159 -0.191 -2.439 2.707 sum -11.726 -5.003 3.463 13.210 Atomic orbital electron populations 1.21692 0.94747 1.02033 1.02119 1.21928 0.96217 0.96627 1.03044 1.21618 0.75333 0.97407 1.04123 1.48436 1.05626 1.56797 1.04073 1.77175 0.99006 1.26135 1.11462 1.23692 0.95700 1.00491 0.94583 1.21343 0.96155 1.15597 0.95765 1.21029 0.91909 0.98727 0.89294 1.20550 0.99025 0.92133 0.89826 1.62600 1.16187 1.07273 1.39928 1.20063 0.84215 0.95070 0.95134 1.21595 1.04966 1.24731 1.05895 0.93023 1.24833 0.96686 0.95299 0.96507 1.69967 1.14021 1.33047 1.35639 0.86741 0.78842 0.77993 0.85526 1.20129 1.21223 1.21237 1.22065 0.95199 0.93798 0.96333 1.22444 0.89971 0.89988 0.98036 1.88377 1.31798 1.14556 1.92083 1.22658 0.99551 0.85833 0.98705 0.92348 0.92491 0.92280 0.91325 0.91545 0.88530 0.89749 0.80819 0.83471 0.90756 0.92292 0.92338 0.94694 0.93219 0.91862 0.92109 0.94508 0.93905 0.90198 0.95289 0.95090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.90 16 2 C -0.14 -1.57 6.26 -26.73 -0.17 -1.73 16 3 C 0.14 1.85 6.20 -4.04 -0.03 1.83 16 4 N -0.37 -6.41 3.61 -57.14 -0.21 -6.62 16 5 N -0.32 -5.86 12.58 30.63 0.39 -5.48 16 6 C 0.04 0.72 12.03 -17.36 -0.21 0.52 16 7 C -0.26 -5.12 9.74 -40.01 -0.39 -5.51 16 8 C 0.12 2.25 5.99 -82.26 -0.49 1.76 16 9 C 0.11 2.13 4.76 -4.98 -0.02 2.11 16 10 N -0.54 -10.87 4.58 -237.52 -1.09 -11.96 16 11 C 0.18 4.54 4.59 -4.97 -0.02 4.52 16 12 C -0.53 -14.20 7.22 -34.44 -0.25 -14.45 16 13 H 0.05 1.36 6.05 -52.49 -0.32 1.04 16 14 C 0.07 1.91 5.45 -17.82 -0.10 1.82 16 15 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 16 Si 0.88 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 C 0.05 0.98 5.34 -3.82 -0.02 0.96 16 21 C 0.07 1.23 6.25 37.16 0.23 1.47 16 22 O -0.35 -7.11 7.74 -35.23 -0.27 -7.38 16 23 C 0.03 0.47 11.01 101.05 1.11 1.58 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 1.27 7.53 -51.93 -0.39 0.88 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 32 H 0.15 3.07 8.06 -52.49 -0.42 2.64 16 33 H 0.07 1.53 6.76 -51.93 -0.35 1.18 16 34 H 0.06 0.92 7.33 -51.93 -0.38 0.54 16 35 H 0.06 1.63 5.56 -51.93 -0.29 1.34 16 36 H 0.03 0.98 6.68 -51.93 -0.35 0.63 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.06 1.30 5.84 -51.93 -0.30 1.00 16 39 H 0.06 0.89 7.66 -51.93 -0.40 0.49 16 40 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.03 0.39 8.12 -51.93 -0.42 -0.04 16 44 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 354.77 15.07 5.35 5.35 Total: -1.00 -31.47 354.77 -7.51 -38.98 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.41 Total: 2.12 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 0.02 Total: -6.05 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.17 Total: -49.42 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.27 Total: -7.38 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.47 -7.51 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596996335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.754 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds