Wall clock time and date at job start Tue Mar 31 2020 05:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47113 * 2 1 4 4 N 1.46502 * 109.46894 * 184.81515 * 3 2 1 5 5 N 1.40086 * 126.03633 * 274.84062 * 4 3 2 6 6 C 1.30842 * 108.20625 * 179.85782 * 5 4 3 7 7 C 1.39874 * 108.20073 * 0.40696 * 6 5 4 8 8 C 1.34950 * 126.03812 * 95.15685 * 4 3 2 9 9 C 1.50700 * 126.12436 * 359.95649 * 8 4 3 10 10 N 1.46892 * 109.47430 * 85.31616 * 9 8 4 11 11 C 1.46903 * 111.00175 * 75.58066 * 10 9 8 12 12 C 1.50703 * 109.46873 * 67.37274 * 11 10 9 13 13 H 1.08000 * 119.99841 * 3.36135 * 12 11 10 14 14 C 1.37873 * 119.99920 * 183.36686 * 12 11 10 15 15 N 1.31516 * 119.99976 * 5.20359 * 14 12 11 16 16 Si 1.86801 * 119.99955 * 185.20472 * 14 12 11 17 17 H 1.48500 * 109.47042 * 5.00586 * 16 14 12 18 18 H 1.48502 * 109.47347 * 125.00452 * 16 14 12 19 19 H 1.48503 * 109.47323 * 245.00445 * 16 14 12 20 20 C 1.46902 * 111.00140 * 199.53765 * 10 9 8 21 21 C 1.52998 * 109.47200 * 162.83125 * 20 10 9 22 22 O 1.42902 * 109.47159 * 66.11390 * 21 20 10 23 23 C 1.42902 * 114.00010 * 175.00553 * 22 21 20 24 24 H 1.09002 * 109.47082 * 175.13494 * 1 2 3 25 25 H 1.08992 * 109.47009 * 295.13705 * 1 2 3 26 26 H 1.09001 * 109.46967 * 55.13712 * 1 2 3 27 27 H 1.08996 * 109.47676 * 120.00481 * 2 1 3 28 28 H 1.09005 * 109.47168 * 240.00282 * 2 1 3 29 29 H 1.08995 * 109.47300 * 304.81726 * 3 2 1 30 30 H 1.09002 * 109.46828 * 64.81930 * 3 2 1 31 31 H 1.07996 * 125.90195 * 180.14278 * 6 5 4 32 32 H 1.07995 * 126.04370 * 179.74139 * 7 6 5 33 33 H 1.09002 * 109.46555 * 205.31869 * 9 8 4 34 34 H 1.09001 * 109.46743 * 325.31094 * 9 8 4 35 35 H 1.08998 * 109.47549 * 187.36920 * 11 10 9 36 36 H 1.09003 * 109.46786 * 307.37553 * 11 10 9 37 37 H 0.97005 * 119.99840 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.46514 * 282.83150 * 20 10 9 39 39 H 1.08995 * 109.47140 * 42.82569 * 20 10 9 40 40 H 1.09003 * 109.46828 * 186.11131 * 21 20 10 41 41 H 1.09000 * 109.47268 * 306.11437 * 21 20 10 42 42 H 1.09001 * 109.47419 * 184.84485 * 23 22 21 43 43 H 1.08999 * 109.46661 * 304.84197 * 23 22 21 44 44 H 1.08999 * 109.47561 * 64.83915 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5004 1.4441 -0.1159 5 7 4.4112 1.3178 0.9409 6 6 5.6213 1.3611 0.4452 7 6 5.5202 1.5254 -0.9402 8 6 4.2060 1.5734 -1.2590 9 6 3.6329 1.7409 -2.6427 10 7 3.3526 3.1618 -2.8880 11 6 4.5919 3.9050 -3.1519 12 6 5.1791 3.4528 -4.4641 13 1 4.6538 2.7294 -5.0700 14 6 6.3868 3.9626 -4.8911 15 7 7.0757 4.7643 -4.1085 16 14 7.0447 3.5147 -6.5810 17 1 6.0341 2.7038 -7.3066 18 1 7.3268 4.7551 -7.3472 19 1 8.2961 2.7290 -6.4329 20 6 2.3949 3.3269 -3.9897 21 6 1.8033 4.7372 -3.9441 22 8 2.8293 5.6933 -4.2185 23 6 2.3594 7.0396 -4.3117 24 1 -0.3633 -1.0240 -0.0872 25 1 -0.3633 0.4365 0.9303 26 1 -0.3633 0.5874 -0.8432 27 1 1.8934 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.6080 1.9807 -0.8436 30 1 1.7489 1.9308 0.9300 31 1 6.5396 1.2873 1.0088 32 1 6.3452 1.6006 -1.6330 33 1 4.3506 1.3796 -3.3793 34 1 2.7088 1.1687 -2.7248 35 1 4.3727 4.9716 -3.2003 36 1 5.3061 3.7168 -2.3502 37 1 7.9253 5.1232 -4.4091 38 1 2.9061 3.1779 -4.9407 39 1 1.5948 2.5938 -3.8885 40 1 1.0154 4.8250 -4.6921 41 1 1.3872 4.9248 -2.9542 42 1 3.1816 7.6919 -4.6061 43 1 1.5658 7.0966 -5.0566 44 1 1.9724 7.3572 -3.3435 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596996335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:13 Heat of formation + Delta-G solvation = 13.929820 kcal Electronic energy + Delta-G solvation = -23270.610696 eV Core-core repulsion = 20031.266191 eV Total energy + Delta-G solvation = -3239.344505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.08376 -39.25779 -37.55037 -36.22007 -34.45435 -32.60772 -31.82461 -30.26251 -28.72252 -27.10850 -26.95105 -26.03283 -24.18142 -22.88985 -21.81158 -21.63702 -20.38111 -18.51355 -17.58450 -17.31490 -17.01198 -16.55627 -16.23429 -16.02391 -15.66138 -15.33098 -15.15042 -15.02826 -14.45651 -14.38462 -13.94664 -13.80839 -13.42082 -12.99166 -12.94430 -12.94118 -12.77466 -12.59388 -12.48929 -12.29080 -12.20214 -12.10600 -11.83916 -11.74295 -11.58920 -11.49725 -11.35895 -10.50871 -10.22041 -10.05885 -9.34139 -8.93748 -7.99564 -6.11380 0.99952 1.39214 1.41257 1.50627 1.73730 1.98939 2.46748 3.17921 3.29273 3.46569 3.70209 3.90528 4.01214 4.14737 4.18681 4.34774 4.36002 4.51264 4.55600 4.57110 4.59727 4.63383 4.72901 4.77345 4.82450 4.91564 4.92335 4.94726 4.95690 5.13879 5.21003 5.24761 5.39500 5.40622 5.50165 5.63844 5.85579 6.05893 6.18160 6.26841 6.36466 6.53706 6.68273 6.87380 7.07635 7.54966 9.04792 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014023 B = 0.006073 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.230243 B = 4609.103331 C = 5706.758292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.128 3.872 4 N -0.362 5.362 5 N -0.328 5.328 6 C 0.040 3.960 7 C -0.288 4.288 8 C 0.111 3.889 9 C 0.121 3.879 10 N -0.531 5.531 11 C 0.201 3.799 12 C -0.526 4.526 13 H 0.055 0.945 14 C 0.014 3.986 15 N -0.927 5.927 16 Si 0.943 3.057 17 H -0.266 1.266 18 H -0.286 1.286 19 H -0.284 1.284 20 C 0.052 3.948 21 C 0.071 3.929 22 O -0.398 6.398 23 C 0.028 3.972 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.202 0.798 32 H 0.125 0.875 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.033 0.967 36 H -0.003 1.003 37 H 0.257 0.743 38 H 0.036 0.964 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.051 0.949 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.735 -5.867 3.993 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.008 3.992 4 N -0.145 5.145 5 N -0.150 5.150 6 C -0.144 4.144 7 C -0.318 4.318 8 C -0.018 4.018 9 C -0.009 4.009 10 N -0.255 5.255 11 C 0.075 3.925 12 C -0.565 4.565 13 H 0.073 0.927 14 C -0.184 4.184 15 N -0.568 5.568 16 Si 0.770 3.230 17 H -0.190 1.190 18 H -0.213 1.213 19 H -0.210 1.210 20 C -0.076 4.076 21 C -0.006 4.006 22 O -0.317 6.317 23 C -0.069 4.069 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.219 0.781 32 H 0.143 0.857 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.051 0.949 36 H 0.016 0.984 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.122 0.878 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.483 -5.736 5.482 17.398 hybrid contribution 1.870 0.092 -2.266 2.939 sum -13.613 -5.644 3.216 15.084 Atomic orbital electron populations 1.21667 0.92310 1.03052 1.02969 1.21846 0.98131 0.94583 1.02291 1.21999 0.73046 0.99305 1.04893 1.48744 1.06934 1.55624 1.03157 1.77128 0.99310 1.26491 1.12063 1.24086 0.96707 0.99728 0.93913 1.21359 0.96303 1.17521 0.96611 1.21075 0.91984 0.98661 0.90065 1.20525 1.00089 0.91367 0.88929 1.62480 1.14245 1.07849 1.40961 1.19566 0.85434 0.94294 0.93181 1.21848 1.04642 1.23837 1.06216 0.92742 1.25605 0.97312 0.95553 0.99945 1.70105 1.14502 1.34690 1.37476 0.85742 0.78300 0.77642 0.81312 1.19042 1.21258 1.21028 1.22240 0.95404 0.96077 0.93848 1.22584 0.89856 0.88571 0.99550 1.88294 1.34324 1.16648 1.92468 1.22764 0.99980 0.83910 1.00237 0.91271 0.91721 0.91380 0.92259 0.92149 0.87714 0.88973 0.78099 0.85726 0.93141 0.88511 0.94870 0.98443 0.93384 0.94562 0.87769 0.91306 0.93056 0.91155 0.92605 0.93879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.91 71.98 0.71 -1.24 16 2 C -0.13 -2.60 6.26 30.60 0.19 -2.41 16 3 C 0.13 3.18 6.20 86.38 0.54 3.72 16 4 N -0.36 -12.33 3.61 -334.69 -1.21 -13.54 16 5 N -0.33 -11.99 12.58 -57.02 -0.72 -12.71 16 6 C 0.04 1.45 12.03 85.24 1.03 2.47 16 7 C -0.29 -11.80 9.74 21.99 0.21 -11.58 16 8 C 0.11 4.24 5.99 41.41 0.25 4.49 16 9 C 0.12 4.40 4.76 85.56 0.41 4.80 16 10 N -0.53 -21.28 4.58 -905.37 -4.14 -25.42 16 11 C 0.20 10.45 4.59 85.56 0.39 10.85 16 12 C -0.53 -28.59 7.22 25.60 0.18 -28.40 16 13 H 0.05 2.88 6.05 -2.91 -0.02 2.86 16 14 C 0.01 0.80 5.45 84.65 0.46 1.26 16 15 N -0.93 -56.31 13.29 21.45 0.29 -56.03 16 16 Si 0.94 44.65 29.54 68.60 2.03 46.68 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 20 C 0.05 1.77 5.34 86.30 0.46 2.23 16 21 C 0.07 2.24 6.25 71.98 0.45 2.69 16 22 O -0.40 -15.97 7.74 -148.98 -1.15 -17.12 16 23 C 0.03 0.84 11.01 113.37 1.25 2.09 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.10 2.44 7.53 -2.39 -0.02 2.42 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.20 5.77 8.06 -2.91 -0.02 5.75 16 32 H 0.12 5.58 8.06 -2.91 -0.02 5.56 16 33 H 0.05 2.10 6.76 -2.39 -0.02 2.08 16 34 H 0.10 2.76 7.33 -2.39 -0.02 2.75 16 35 H 0.03 1.92 5.56 -2.39 -0.01 1.91 16 36 H 0.00 -0.15 6.68 -2.39 -0.02 -0.17 16 37 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 38 H 0.04 1.44 5.84 -2.39 -0.01 1.43 16 39 H 0.10 2.61 7.66 -2.39 -0.02 2.59 16 40 H 0.07 1.72 8.12 -2.39 -0.02 1.70 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.06 1.37 8.12 -2.39 -0.02 1.35 16 44 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -70.14 354.77 2.58 -67.56 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.96 Total: 19.62 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 6.53 Total: -9.04 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -5.79 Total: -107.70 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -1.15 Total: -17.12 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -70.14 2.58 -67.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596996335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.489 kcal (2) G-P(sol) polarization free energy of solvation -70.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds