Wall clock time and date at job start Tue Mar 31 2020 05:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86810 * 119.99652 * 2 1 4 4 H 1.48495 * 109.47037 * 240.00049 * 3 2 1 5 5 H 1.48495 * 109.46817 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46854 * 119.99800 * 3 2 1 7 7 C 1.37876 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99653 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47008 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47301 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 10 14 14 O 1.21593 * 119.99949 * 0.28071 * 13 12 11 15 15 N 1.34777 * 120.00128 * 180.27942 * 13 12 11 16 16 C 1.46499 * 120.00065 * 180.02562 * 15 13 12 17 17 H 1.09000 * 115.55454 * 9.41915 * 16 15 13 18 18 C 1.53050 * 117.50722 * 223.71103 * 16 15 13 19 19 C 1.52763 * 117.50338 * 155.11859 * 16 15 13 20 20 C 1.53211 * 117.78781 * 359.64546 * 19 16 15 21 21 C 1.53264 * 108.62614 * 265.98326 * 20 19 16 22 22 N 1.46808 * 109.44895 * 304.42747 * 21 20 19 23 23 C 1.46811 * 111.58627 * 64.81949 * 22 21 20 24 24 C 1.53224 * 117.78398 * 215.29074 * 19 16 15 25 25 H 0.97000 * 120.00497 * 0.02562 * 1 2 3 26 26 H 1.08990 * 109.47431 * 59.99962 * 9 7 2 27 27 H 1.09002 * 109.47072 * 299.99242 * 9 7 2 28 28 H 1.09004 * 109.47038 * 59.99609 * 10 9 7 29 29 H 1.09000 * 109.46939 * 300.00262 * 10 9 7 30 30 H 1.09004 * 109.47066 * 60.00027 * 11 10 9 31 31 H 1.08994 * 109.46974 * 300.00175 * 11 10 9 32 32 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 33 33 H 0.97000 * 119.99549 * 359.97438 * 15 13 12 34 34 H 1.08997 * 117.49925 * 0.02562 * 18 16 15 35 35 H 1.08994 * 117.50389 * 145.05828 * 18 16 15 36 36 H 1.09006 * 109.61030 * 25.72300 * 20 19 16 37 37 H 1.08996 * 109.61202 * 146.23780 * 20 19 16 38 38 H 1.08999 * 109.47544 * 184.43426 * 21 20 19 39 39 H 1.08999 * 109.47634 * 64.42317 * 21 20 19 40 40 H 1.00898 * 111.00041 * 300.43966 * 22 21 20 41 41 H 1.08991 * 109.47574 * 175.18649 * 23 22 21 42 42 H 1.09005 * 109.47671 * 55.17149 * 23 22 21 43 43 H 1.09003 * 109.61083 * 213.75933 * 24 19 16 44 44 H 1.08995 * 109.61494 * 334.28028 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4326 -6.1005 0.0006 13 6 1.9834 -7.3712 0.0066 14 8 0.7880 -7.5934 0.0074 15 7 2.8593 -8.3956 0.0117 16 6 2.3710 -9.7768 0.0177 17 1 1.2998 -9.8975 -0.1432 18 6 3.0601 -10.7660 0.9607 19 6 3.2951 -10.8542 -0.5470 20 6 4.6601 -10.4137 -1.0858 21 6 4.5378 -10.1786 -2.5953 22 7 4.0181 -11.3916 -3.2385 23 6 2.6491 -11.6909 -2.8007 24 6 2.6527 -12.0211 -1.3041 25 1 -0.4851 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8722 -3.6042 0.8905 29 1 2.8721 -3.6042 -0.8894 30 1 0.8536 -5.0451 -0.8886 31 1 0.8542 -5.0445 0.8913 32 1 3.3863 -5.9232 0.0002 33 1 3.8129 -8.2182 0.0107 34 1 3.8763 -10.3889 1.5767 35 1 2.4421 -11.5377 1.4196 36 1 4.9663 -9.4897 -0.5952 37 1 5.3975 -11.1935 -0.8955 38 1 5.5188 -9.9409 -3.0067 39 1 3.8556 -9.3487 -2.7798 40 1 4.6297 -12.1775 -3.0758 41 1 2.2671 -12.5446 -3.3603 42 1 2.0126 -10.8244 -2.9801 43 1 3.2284 -12.9305 -1.1314 44 1 1.6287 -12.1622 -0.9582 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597440923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:11 Heat of formation + Delta-G solvation = -25.108277 kcal Electronic energy + Delta-G solvation = -21716.267703 eV Core-core repulsion = 18475.230379 eV Total energy + Delta-G solvation = -3241.037324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.53184 -39.21787 -36.31971 -35.27693 -33.47056 -32.87077 -31.37783 -30.92336 -28.55608 -26.62519 -23.60248 -23.45917 -22.58210 -22.09742 -20.84580 -20.38764 -19.49086 -18.14073 -16.81192 -16.24661 -15.85976 -15.45660 -15.03253 -14.94103 -14.74995 -14.43376 -14.32202 -14.12165 -13.78678 -13.63267 -13.00709 -12.79037 -12.27616 -12.26045 -11.95679 -11.81493 -11.64833 -11.63168 -11.10290 -10.87628 -10.84018 -10.72380 -10.62442 -10.41882 -10.14295 -9.85763 -9.44448 -9.13663 -8.99906 -8.67551 -8.54856 -8.36670 -6.01369 -4.04660 2.67014 3.12860 3.32107 3.36928 3.38745 3.59872 3.93142 4.21876 4.29157 4.41305 4.45189 4.47792 4.54321 4.73747 4.96996 4.98564 5.16704 5.30160 5.34231 5.37310 5.42818 5.50105 5.56553 5.58882 5.68929 5.75214 5.81000 5.82603 5.84006 6.18079 6.42591 6.51436 6.61992 6.66251 6.78528 7.01562 7.03450 7.04457 7.63833 7.76926 7.97356 8.09992 8.38143 8.71093 9.01843 9.59425 11.09900 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032616 B = 0.002538 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.263815 B =11027.631706 C =11303.998477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.740 5.740 13 C 0.703 3.297 14 O -0.591 6.591 15 N -0.721 5.721 16 C 0.121 3.879 17 H 0.137 0.863 18 C -0.188 4.188 19 C -0.138 4.138 20 C -0.118 4.118 21 C 0.060 3.940 22 N -0.686 5.686 23 C 0.058 3.942 24 C -0.117 4.117 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.393 0.607 33 H 0.394 0.606 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.339 0.661 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.518 -25.705 -1.859 27.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.394 5.394 13 C 0.403 3.597 14 O -0.468 6.468 15 N -0.375 5.375 16 C 0.014 3.986 17 H 0.155 0.845 18 C -0.227 4.227 19 C -0.140 4.140 20 C -0.157 4.157 21 C -0.070 4.070 22 N -0.314 5.314 23 C -0.071 4.071 24 C -0.157 4.157 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.226 0.774 33 H 0.229 0.771 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.156 0.844 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.002 -25.373 -2.455 27.034 hybrid contribution 1.584 0.785 1.136 2.101 sum 10.586 -24.587 -1.319 26.802 Atomic orbital electron populations 1.69954 1.06058 1.26816 1.50450 1.25030 0.94855 0.99284 0.95271 0.86642 0.79562 0.83112 0.78574 1.20246 1.21261 1.20254 1.21166 0.92943 0.90964 1.51086 0.92714 1.19021 0.93842 0.90768 0.97700 1.21893 0.99800 0.93315 1.00817 1.21529 0.91269 0.84075 1.01950 1.45385 1.10480 1.04384 1.79173 1.15960 0.85233 0.80703 0.77767 1.90916 1.14088 1.84026 1.57810 1.44545 1.08685 1.04065 1.80244 1.21474 0.97617 0.77590 1.01942 0.84528 1.23621 1.03944 1.02935 0.92214 1.22017 0.97380 0.99215 0.95356 1.21808 0.94544 1.01252 0.98087 1.22035 1.00773 0.93618 0.90586 1.60461 1.03674 1.06784 1.60452 1.22052 0.90785 1.01897 0.92413 1.21866 1.00929 0.95969 0.96889 0.92851 0.96230 0.96243 0.92792 0.92746 0.91878 0.91906 0.77352 0.77094 0.88573 0.88058 0.91568 0.91352 0.90582 0.90580 0.84400 0.90563 0.90584 0.91369 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.13 2.41 5.67 -4.04 -0.02 2.39 16 12 N -0.74 -10.74 5.56 -65.23 -0.36 -11.10 16 13 C 0.70 10.78 8.57 -86.92 -0.74 10.03 16 14 O -0.59 -11.62 15.91 5.28 0.08 -11.54 16 15 N -0.72 -7.88 5.35 -58.77 -0.31 -8.20 16 16 C 0.12 1.22 6.10 -68.03 -0.41 0.81 16 17 H 0.14 1.66 7.40 -51.93 -0.38 1.28 16 18 C -0.19 -1.48 9.93 -26.79 -0.27 -1.74 16 19 C -0.14 -1.03 2.02 -154.49 -0.31 -1.34 16 20 C -0.12 -0.77 5.64 -26.49 -0.15 -0.92 16 21 C 0.06 0.44 6.56 -3.74 -0.02 0.42 16 22 N -0.69 -5.10 6.82 -113.61 -0.77 -5.88 16 23 C 0.06 0.43 6.56 -3.73 -0.02 0.40 16 24 C -0.12 -0.78 5.83 -26.48 -0.15 -0.94 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.39 4.51 8.49 -40.82 -0.35 4.16 16 33 H 0.39 3.28 6.86 -40.82 -0.28 3.00 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.41 6.18 -51.93 -0.32 0.09 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 40 H 0.34 2.02 8.81 -39.29 -0.35 1.68 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.70 8.12 -51.93 -0.42 0.27 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -32.77 355.29 -10.66 -43.43 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.55 Total: 3.94 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -2.80 Total: -6.31 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.72 Total: -51.36 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.77 -10.66 -43.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597440923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.322 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds