Wall clock time and date at job start Tue Mar 31 2020 05:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99642 * 180.02562 * 12 11 10 14 14 O 1.21582 * 120.00311 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99947 * 180.02562 * 13 12 11 16 16 C 1.46498 * 120.00018 * 179.97438 * 15 13 12 17 17 H 1.08992 * 115.55612 * 350.69703 * 16 15 13 18 18 C 1.53053 * 117.50492 * 136.46048 * 16 15 13 19 19 C 1.52741 * 59.94558 * 107.46635 * 18 16 15 20 20 C 1.53210 * 117.84802 * 107.73368 * 19 18 16 21 21 C 1.53258 * 108.62052 * 197.02603 * 20 19 18 22 22 N 1.46816 * 109.44210 * 304.40988 * 21 20 19 23 23 C 1.46815 * 111.58020 * 64.82322 * 22 21 20 24 24 C 1.53211 * 117.84351 * 252.26736 * 19 18 16 25 25 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 30 30 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 31 31 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 32 32 H 0.96998 * 120.00192 * 359.97438 * 12 11 10 33 33 H 0.96998 * 119.99887 * 359.97438 * 15 13 12 34 34 H 1.09003 * 117.49914 * 214.93656 * 18 16 15 35 35 H 1.08995 * 117.50325 * 359.97438 * 18 16 15 36 36 H 1.09008 * 109.61014 * 316.76106 * 20 19 18 37 37 H 1.08993 * 109.61558 * 77.28098 * 20 19 18 38 38 H 1.09006 * 109.47944 * 184.42299 * 21 20 19 39 39 H 1.09001 * 109.48241 * 64.40442 * 21 20 19 40 40 H 1.00898 * 110.99937 * 189.19338 * 22 21 20 41 41 H 1.09001 * 109.46821 * 175.19011 * 23 22 21 42 42 H 1.08991 * 109.48292 * 55.17339 * 23 22 21 43 43 H 1.09000 * 109.61229 * 282.71350 * 24 19 18 44 44 H 1.08996 * 109.61779 * 43.23280 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5515 -2.6368 -0.0001 12 7 6.0397 -4.0180 -0.0009 13 6 7.3648 -4.2642 -0.0005 14 8 8.1549 -3.3402 -0.0001 15 7 7.8141 -5.5350 -0.0017 16 6 9.2544 -5.8027 -0.0019 17 1 9.8940 -4.9345 -0.1600 18 6 9.7694 -6.9003 0.9322 19 6 9.7236 -7.1385 -0.5758 20 6 11.0528 -7.1612 -1.3375 21 6 10.7634 -6.9834 -2.8320 22 7 9.8183 -8.0167 -3.2731 23 6 8.5101 -7.8642 -2.6243 24 6 8.6580 -8.0972 -1.1168 25 1 -0.4849 0.8401 0.0004 26 1 3.8746 -0.6809 0.8905 27 1 3.8752 -0.6798 -0.8895 28 1 3.6584 -3.1503 -0.8903 29 1 3.6579 -3.1507 0.8896 30 1 5.9148 -2.1228 -0.8901 31 1 5.9149 -2.1230 0.8899 32 1 5.4094 -4.7552 -0.0009 33 1 7.1837 -6.2722 -0.0025 34 1 10.7482 -6.7539 1.3891 35 1 9.0366 -7.4227 1.5471 36 1 11.6883 -6.3473 -0.9886 37 1 11.5527 -8.1156 -1.1726 38 1 11.6919 -7.0760 -3.3955 39 1 10.3307 -5.9979 -3.0038 40 1 9.7257 -8.0169 -4.2778 41 1 7.8124 -8.5924 -3.0380 42 1 8.1318 -6.8574 -2.8010 43 1 8.9656 -9.1269 -0.9342 44 1 7.7064 -7.9038 -0.6216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597440924.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:13 Heat of formation + Delta-G solvation = -20.235463 kcal Electronic energy + Delta-G solvation = -21758.013304 eV Core-core repulsion = 18517.187281 eV Total energy + Delta-G solvation = -3240.826023 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47846 -39.17361 -36.29953 -35.39384 -33.51627 -32.89110 -31.36973 -31.16124 -28.92602 -27.06445 -23.62929 -23.36805 -22.25113 -22.02567 -20.89926 -20.29938 -19.08326 -18.14271 -17.08926 -16.70905 -16.25973 -15.54597 -15.04126 -14.97034 -14.77188 -14.45287 -14.20310 -14.15709 -13.67006 -13.33296 -13.03925 -12.76233 -12.69644 -12.34711 -12.15945 -11.93347 -11.89253 -11.58674 -11.08033 -10.99859 -10.86051 -10.81022 -10.31317 -10.12413 -10.01804 -9.83377 -9.68956 -9.23655 -9.04836 -8.80433 -8.59131 -8.56014 -6.07138 -4.05845 2.63243 3.10514 3.31011 3.38589 3.43187 3.61719 3.85969 4.19591 4.33977 4.39565 4.43960 4.48543 4.57313 4.86365 5.02818 5.10036 5.19940 5.22881 5.27081 5.42330 5.45179 5.47728 5.51759 5.63038 5.67743 5.68961 5.70652 5.88164 5.90209 6.02383 6.35736 6.41231 6.45500 6.64588 6.67341 6.80423 6.96477 6.99110 7.22520 7.35884 7.74978 8.04304 8.49286 8.65034 8.96637 9.55174 11.06112 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031658 B = 0.002661 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.247147 B =10520.684224 C =10710.133189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.133 3.867 12 N -0.741 5.741 13 C 0.704 3.296 14 O -0.592 6.592 15 N -0.720 5.720 16 C 0.114 3.886 17 H 0.136 0.864 18 C -0.186 4.186 19 C -0.134 4.134 20 C -0.076 4.076 21 C 0.058 3.942 22 N -0.691 5.691 23 C 0.060 3.940 24 C -0.076 4.076 25 H 0.263 0.737 26 H 0.019 0.981 27 H 0.014 0.986 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.395 0.605 33 H 0.395 0.605 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.343 0.657 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.076 0.924 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.331 -18.701 -3.116 28.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.010 3.990 12 N -0.395 5.395 13 C 0.404 3.596 14 O -0.470 6.470 15 N -0.374 5.374 16 C 0.007 3.993 17 H 0.153 0.847 18 C -0.225 4.225 19 C -0.136 4.136 20 C -0.114 4.114 21 C -0.071 4.071 22 N -0.323 5.323 23 C -0.070 4.070 24 C -0.114 4.114 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.228 0.772 33 H 0.230 0.770 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.160 0.840 41 H 0.093 0.907 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 22.079 -18.112 -2.660 28.681 hybrid contribution -0.703 0.937 -0.415 1.243 sum 21.376 -17.175 -3.076 27.593 Atomic orbital electron populations 1.69912 1.06326 1.26967 1.51017 1.25032 0.94750 0.99254 0.94454 0.86772 0.80426 0.83494 0.78600 1.20241 1.21370 1.18852 1.21097 0.89312 0.94501 1.51100 0.91026 1.19499 0.97240 0.91441 0.96699 1.21707 0.90646 1.01033 1.01688 1.21528 0.95711 0.79942 1.01857 1.45327 1.04680 1.10163 1.79311 1.15947 0.83040 0.82888 0.77736 1.90907 1.55055 1.43133 1.57925 1.44540 1.06418 1.06403 1.80088 1.21534 0.81921 0.93299 1.02579 0.84661 1.23594 1.03277 1.03256 0.92401 1.22031 0.98015 0.98359 0.95147 1.21179 0.94159 1.02423 0.93633 1.21923 0.96159 0.92896 0.96104 1.60112 1.10482 1.50154 1.11502 1.21901 0.90452 0.99965 0.94642 1.21107 0.96636 0.98991 0.94679 0.92692 0.96268 0.96721 0.92177 0.92111 0.91972 0.91904 0.77180 0.77019 0.88003 0.88498 0.91201 0.90548 0.90747 0.94830 0.83963 0.90738 0.94786 0.90532 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.70 9.66 -34.44 -0.33 -15.04 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.25 4.04 -27.89 -0.11 -0.37 16 10 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 11 C 0.13 2.23 5.67 -4.04 -0.02 2.21 16 12 N -0.74 -10.27 5.56 -65.22 -0.36 -10.63 16 13 C 0.70 10.43 8.57 -86.91 -0.74 9.68 16 14 O -0.59 -11.27 15.91 5.29 0.08 -11.19 16 15 N -0.72 -7.72 5.35 -58.77 -0.31 -8.03 16 16 C 0.11 1.14 6.11 -68.02 -0.42 0.73 16 17 H 0.14 1.62 7.40 -51.93 -0.38 1.24 16 18 C -0.19 -1.46 9.93 -26.84 -0.27 -1.72 16 19 C -0.13 -1.05 2.02 -154.54 -0.31 -1.36 16 20 C -0.08 -0.55 5.87 -26.49 -0.16 -0.71 16 21 C 0.06 0.44 6.55 -3.74 -0.02 0.41 16 22 N -0.69 -5.12 6.77 -113.61 -0.77 -5.89 16 23 C 0.06 0.45 6.56 -3.73 -0.02 0.43 16 24 C -0.08 -0.55 5.67 -26.49 -0.15 -0.70 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 27 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.39 4.34 8.49 -40.82 -0.35 3.99 16 33 H 0.39 3.23 6.86 -40.82 -0.28 2.95 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.47 8.08 -51.92 -0.42 0.05 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 40 H 0.34 2.10 8.90 -39.29 -0.35 1.75 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.03 0.31 8.12 -51.93 -0.42 -0.12 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.40 6.19 -51.93 -0.32 0.08 16 LS Contribution 351.78 15.07 5.30 5.30 Total: -1.00 -33.34 351.78 -10.28 -43.62 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.52 Total: 3.55 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.80 Total: -6.84 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.67 Total: -51.54 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.34 -10.28 -43.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597440924.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.385 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds