Wall clock time and date at job start Tue Mar 31 2020 06:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48815 * 111.18088 * 2 1 4 4 C 1.54935 * 103.34713 * 159.50371 * 3 2 1 5 5 C 1.54597 * 102.92348 * 322.68979 * 4 3 2 6 6 C 1.47904 * 111.00088 * 117.33296 * 2 1 3 7 7 H 1.09003 * 109.91462 * 333.71069 * 6 2 1 8 8 C 1.53000 * 109.91522 * 94.80384 * 6 2 1 9 9 N 1.46496 * 109.47183 * 298.17048 * 8 6 2 10 10 C 1.34775 * 119.99784 * 173.53827 * 9 8 6 11 11 O 1.21589 * 120.00393 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00433 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00503 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46844 * 185.06842 * 13 12 10 15 15 C 1.50692 * 115.55292 * 56.91171 * 14 13 12 16 16 H 1.07998 * 120.00396 * 264.78217 * 15 14 13 17 17 C 1.37876 * 120.00069 * 84.78214 * 15 14 13 18 18 N 1.31522 * 120.00141 * 2.03669 * 17 15 14 19 19 Si 1.86797 * 120.00318 * 182.03399 * 17 15 14 20 20 H 1.48499 * 109.47130 * 59.99775 * 19 17 15 21 21 H 1.48496 * 109.47705 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47111 * 300.00049 * 19 17 15 23 23 C 1.53004 * 117.49374 * 271.23775 * 14 13 12 24 24 C 1.53008 * 117.49192 * 202.58265 * 14 13 12 25 25 H 1.08991 * 109.47350 * 294.72349 * 1 2 3 26 26 H 1.08997 * 109.47115 * 54.72660 * 1 2 3 27 27 H 1.08999 * 109.46391 * 174.71941 * 1 2 3 28 28 H 1.08995 * 110.51888 * 41.06815 * 3 2 1 29 29 H 1.09005 * 110.84164 * 278.08647 * 3 2 1 30 30 H 1.08997 * 110.72328 * 204.32991 * 4 3 2 31 31 H 1.09008 * 110.87666 * 81.11838 * 4 3 2 32 32 H 1.08999 * 110.30467 * 263.04464 * 5 4 3 33 33 H 1.08997 * 110.39244 * 140.91497 * 5 4 3 34 34 H 1.09000 * 109.46688 * 58.17070 * 8 6 2 35 35 H 1.08999 * 109.46982 * 178.16948 * 8 6 2 36 36 H 0.96995 * 120.00135 * 353.54719 * 9 8 6 37 37 H 0.97007 * 119.99284 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.46668 * 305.06352 * 13 12 10 39 39 H 1.08993 * 109.47285 * 65.06818 * 13 12 10 40 40 H 0.96994 * 119.99785 * 185.01931 * 18 17 15 41 41 H 1.08994 * 117.50199 * 0.02562 * 23 14 13 42 42 H 1.09000 * 117.49447 * 145.02881 * 23 14 13 43 43 H 1.09001 * 117.49259 * 214.98037 * 24 14 13 44 44 H 1.08996 * 117.50145 * 359.97350 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0067 1.3876 0.0000 4 6 3.4526 1.2109 0.5278 5 6 3.2974 0.1061 1.5980 6 6 1.9991 -0.6340 1.2266 7 1 1.2743 -0.5411 2.0355 8 6 2.2983 -2.1110 0.9623 9 7 1.0588 -2.8034 0.6014 10 6 1.0980 -4.0885 0.1973 11 8 2.1620 -4.6734 0.1326 12 7 -0.0423 -4.7258 -0.1343 13 6 0.0002 -6.1229 -0.5731 14 6 -1.3994 -6.5642 -1.0062 15 6 -2.0350 -5.7357 -2.0927 16 1 -2.7072 -4.9307 -1.8347 17 6 -1.7583 -6.0052 -3.4163 18 7 -0.9714 -7.0106 -3.7321 19 14 -2.5012 -4.9426 -4.7610 20 1 -2.0594 -3.5362 -4.5813 21 1 -2.0528 -5.4372 -6.0874 22 1 -3.9827 -5.0097 -4.6832 23 6 -2.3201 -7.1474 0.0677 24 6 -1.7032 -8.0637 -0.9920 25 1 -0.3633 0.4298 0.9334 26 1 -0.3633 0.5934 -0.8390 27 1 -0.3632 -1.0233 -0.0946 28 1 1.4271 2.0219 0.6706 29 1 2.0132 1.8010 -1.0086 30 1 3.8147 2.1354 0.9776 31 1 4.1201 0.8844 -0.2697 32 1 3.2095 0.5498 2.5897 33 1 4.1456 -0.5776 1.5638 34 1 3.0135 -2.1960 0.1441 35 1 2.7187 -2.5630 1.8607 36 1 0.2099 -2.3370 0.6532 37 1 -0.8913 -4.2593 -0.0823 38 1 0.6877 -6.2190 -1.4133 39 1 0.3411 -6.7518 0.2492 40 1 -0.7182 -7.1562 -4.6570 41 1 -1.9290 -7.2162 1.0827 42 1 -3.3857 -6.9321 -0.0120 43 1 -2.3631 -8.4508 -1.7684 44 1 -0.9059 -8.7358 -0.6746 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599049090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:29 Heat of formation + Delta-G solvation = -0.517976 kcal Electronic energy + Delta-G solvation = -22583.992801 eV Core-core repulsion = 19344.021792 eV Total energy + Delta-G solvation = -3239.971009 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.79781 -38.77272 -36.68227 -34.16763 -33.13802 -32.43562 -31.91759 -29.94074 -26.49496 -25.90030 -25.19722 -23.85168 -21.43290 -21.11933 -20.65587 -19.90768 -19.31179 -17.56436 -16.67107 -16.15374 -15.63010 -15.23497 -15.01718 -14.66970 -14.36450 -13.93333 -13.86989 -13.61527 -13.26862 -13.06801 -12.71557 -12.61873 -12.27610 -11.78564 -11.65503 -11.57248 -11.48054 -11.28567 -11.19399 -10.92483 -10.88407 -10.77767 -10.51654 -10.20088 -9.62467 -9.38755 -9.00600 -8.69552 -8.60593 -8.41983 -8.19816 -7.84590 -6.03187 -4.12120 3.30180 3.33410 3.36177 3.37087 3.73818 3.95330 4.38943 4.40927 4.44275 4.70111 4.92825 4.92953 5.07047 5.19859 5.24071 5.26163 5.34015 5.41329 5.49191 5.57048 5.61485 5.73984 5.79450 5.86415 5.92030 6.08197 6.12534 6.38533 6.54451 6.62067 6.65165 6.74993 6.84432 6.92593 6.94752 7.15614 7.43234 7.47337 7.52474 7.70755 7.84833 8.38528 8.77901 8.88500 9.33772 9.54842 11.05039 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018339 B = 0.004319 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.414900 B = 6480.700727 C = 7372.628464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.513 5.513 3 C 0.033 3.967 4 C -0.123 4.123 5 C -0.124 4.124 6 C 0.052 3.948 7 H 0.057 0.943 8 C 0.158 3.842 9 N -0.751 5.751 10 C 0.698 3.302 11 O -0.606 6.606 12 N -0.719 5.719 13 C 0.183 3.817 14 C 0.026 3.974 15 C -0.497 4.497 16 H 0.058 0.942 17 C 0.075 3.925 18 N -0.874 5.874 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.213 4.213 24 C -0.144 4.144 25 H 0.028 0.972 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.389 0.611 37 H 0.394 0.606 38 H 0.068 0.932 39 H 0.032 0.968 40 H 0.262 0.738 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.090 15.671 10.252 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.237 5.237 3 C -0.094 4.094 4 C -0.161 4.161 5 C -0.162 4.162 6 C -0.057 4.057 7 H 0.075 0.925 8 C 0.033 3.967 9 N -0.409 5.409 10 C 0.398 3.602 11 O -0.486 6.486 12 N -0.371 5.371 13 C 0.059 3.941 14 C 0.026 3.974 15 C -0.535 4.535 16 H 0.076 0.924 17 C -0.129 4.129 18 N -0.510 5.510 19 Si 0.717 3.283 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.250 4.250 24 C -0.182 4.182 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.225 0.775 37 H 0.228 0.772 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.252 14.650 9.539 18.254 hybrid contribution -1.532 1.394 -0.141 2.076 sum 3.720 16.043 9.398 18.962 Atomic orbital electron populations 1.22653 0.87619 1.02688 1.00638 1.64726 1.08155 1.14553 1.36298 1.23290 0.94991 0.89939 1.01196 1.22470 0.96704 0.98349 0.98592 1.22366 0.97225 0.97767 0.98866 1.22716 0.96837 0.94753 0.91360 0.92474 1.21131 0.86854 0.88365 1.00397 1.45221 1.09812 1.11853 1.74049 1.16036 0.84857 0.80990 0.78304 1.90856 1.29272 1.66814 1.61626 1.45065 1.07153 1.14752 1.70166 1.20780 0.98447 0.78147 0.96717 1.19046 0.90437 0.93390 0.94568 1.20263 1.28003 1.15927 0.89319 0.92414 1.24962 0.95061 0.94436 0.98468 1.69979 1.34765 1.27666 1.18605 0.86719 0.79461 0.80865 0.81284 1.20248 1.21294 1.20305 1.23046 0.98954 1.09460 0.93538 1.22463 1.01883 0.94274 0.99593 0.95303 0.90956 0.90816 0.93874 0.89942 0.91058 0.90454 0.91175 0.90215 0.90864 0.92138 0.77509 0.77223 0.91403 0.95014 0.92850 0.91717 0.90499 0.89633 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.11 60.07 0.55 0.68 16 2 N -0.51 -5.70 5.13 -230.54 -1.18 -6.88 16 3 C 0.03 0.30 6.57 -1.74 -0.01 0.28 16 4 C -0.12 -0.97 7.06 -24.87 -0.18 -1.14 16 5 C -0.12 -1.03 6.57 -25.38 -0.17 -1.19 16 6 C 0.05 0.54 2.71 -66.64 -0.18 0.36 16 7 H 0.06 0.55 7.60 -51.93 -0.39 0.16 16 8 C 0.16 2.15 5.13 -4.04 -0.02 2.13 16 9 N -0.75 -11.68 5.32 -65.23 -0.35 -12.03 16 10 C 0.70 14.25 8.57 -86.92 -0.74 13.51 16 11 O -0.61 -14.72 16.32 5.29 0.09 -14.64 16 12 N -0.72 -14.78 5.37 -65.23 -0.35 -15.13 16 13 C 0.18 4.30 5.55 -4.04 -0.02 4.28 16 14 C 0.03 0.63 1.52 -155.65 -0.24 0.39 16 15 C -0.50 -12.92 8.33 -34.44 -0.29 -13.21 16 16 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 17 C 0.07 2.01 5.43 -17.82 -0.10 1.92 16 18 N -0.87 -24.68 12.72 55.43 0.70 -23.98 16 19 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.21 -4.49 9.94 -26.69 -0.27 -4.76 16 24 C -0.14 -3.35 9.25 -26.69 -0.25 -3.60 16 25 H 0.03 0.25 7.87 -51.93 -0.41 -0.16 16 26 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.07 0.82 5.53 -51.93 -0.29 0.53 16 28 H 0.04 0.34 8.02 -51.93 -0.42 -0.07 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.66 8.14 -51.92 -0.42 0.23 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.66 7.69 -51.93 -0.40 0.26 16 34 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.39 5.17 5.55 -40.82 -0.23 4.94 16 37 H 0.39 7.38 8.22 -40.82 -0.34 7.04 16 38 H 0.07 1.84 8.13 -51.93 -0.42 1.41 16 39 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.26 7.15 8.32 -40.82 -0.34 6.81 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 44 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -31.13 353.84 -10.19 -41.33 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -7.51 Total: 10.49 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.91 Total: -0.36 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -1.18 Total: -58.02 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.09 Total: -14.64 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.13 -10.19 -41.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599049090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.808 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds