Wall clock time and date at job start Tue Mar 31 2020 05:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 115.55909 * 2 1 4 4 C 1.52995 * 117.50271 * 214.30514 * 2 1 3 5 5 C 1.52998 * 117.49445 * 145.68171 * 2 1 3 6 6 H 1.09003 * 117.51871 * 214.96936 * 5 2 1 7 7 N 1.46496 * 117.50320 * 0.02562 * 5 2 1 8 8 C 1.34779 * 120.00128 * 205.28552 * 7 5 2 9 9 O 1.21586 * 120.00202 * 354.79400 * 8 7 5 10 10 N 1.34775 * 119.99663 * 174.79472 * 8 7 5 11 11 C 1.47081 * 120.88656 * 4.93981 * 10 8 7 12 12 C 1.53687 * 108.27812 * 128.75232 * 11 10 8 13 13 N 1.46901 * 109.26187 * 54.08335 * 12 11 10 14 14 C 1.46894 * 111.00132 * 172.60511 * 13 12 11 15 15 C 1.50699 * 109.47399 * 294.30209 * 14 13 12 16 16 H 1.08001 * 119.99638 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00065 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99980 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99952 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46933 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47122 * 119.99735 * 19 17 15 22 22 H 1.48502 * 109.46988 * 239.99559 * 19 17 15 23 23 C 1.46897 * 111.26635 * 296.75800 * 13 12 11 24 24 C 1.47085 * 120.87986 * 185.21138 * 10 8 7 25 25 H 1.08998 * 109.47374 * 274.31362 * 1 2 3 26 26 H 1.08999 * 109.46920 * 34.31704 * 1 2 3 27 27 H 1.09004 * 109.47268 * 154.31385 * 1 2 3 28 28 H 1.09004 * 109.46555 * 205.68043 * 3 2 1 29 29 H 1.08991 * 109.47079 * 325.68205 * 3 2 1 30 30 H 1.08997 * 109.47297 * 85.69010 * 3 2 1 31 31 H 1.08992 * 117.50105 * 145.02331 * 4 2 1 32 32 H 1.09011 * 117.51655 * 359.97438 * 4 2 1 33 33 H 0.97004 * 119.99845 * 25.01124 * 7 5 2 34 34 H 1.08996 * 109.62433 * 248.52081 * 11 10 8 35 35 H 1.09002 * 109.62536 * 9.10054 * 11 10 8 36 36 H 1.09000 * 109.64980 * 294.07860 * 12 11 10 37 37 H 1.09001 * 109.41934 * 173.94970 * 12 11 10 38 38 H 1.09002 * 109.47340 * 54.31035 * 14 13 12 39 39 H 1.09007 * 109.46733 * 174.29963 * 14 13 12 40 40 H 0.96996 * 120.00291 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.49561 * 303.14343 * 23 13 12 42 42 H 1.08995 * 109.49291 * 183.06251 * 23 13 12 43 43 H 1.09003 * 109.62922 * 350.90361 * 24 10 8 44 44 H 1.08999 * 109.62608 * 111.47567 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1210 -0.7648 5 6 2.2363 -1.1209 0.7652 6 1 3.1715 -0.8755 1.2685 7 7 1.3960 -2.1123 1.4412 8 6 1.8737 -2.7873 2.5055 9 8 3.0318 -2.6435 2.8468 10 7 1.0677 -3.6216 3.1915 11 6 -0.3034 -3.8932 2.7336 12 6 -0.4998 -5.4164 2.6766 13 7 -0.1543 -5.9986 3.9802 14 6 -0.4935 -7.4272 4.0253 15 6 -1.9888 -7.5915 3.9360 16 1 -2.6237 -6.7217 3.8543 17 6 -2.5465 -8.8523 3.9595 18 7 -1.7733 -9.9115 4.0594 19 14 -4.4000 -9.0560 3.8480 20 1 -5.0394 -7.7198 3.7432 21 1 -4.7380 -9.8625 2.6478 22 1 -4.8960 -9.7477 5.0649 23 6 1.2630 -5.7837 4.3011 24 6 1.5337 -4.2802 4.4213 25 1 -0.3634 0.0773 1.0247 26 1 -0.3633 0.8488 -0.5794 27 1 -0.3634 -0.9261 -0.4454 28 1 3.1824 1.3084 -0.4454 29 1 1.5812 2.0742 -0.5793 30 1 2.2772 1.7414 1.0247 31 1 3.1716 -0.8752 -1.2680 32 1 1.6116 -1.8590 -1.2679 33 1 0.4943 -2.2802 1.1253 34 1 -1.0162 -3.4549 3.4320 35 1 -0.4492 -3.4664 1.7412 36 1 0.1447 -5.8405 1.9066 37 1 -1.5409 -5.6391 2.4432 38 1 -0.0209 -7.9395 3.1873 39 1 -0.1361 -7.8561 4.9616 40 1 -2.1655 -10.7985 4.0756 41 1 1.8830 -6.2025 3.5084 42 1 1.5003 -6.2727 5.2458 43 1 2.6031 -4.1095 4.5454 44 1 0.9941 -3.8784 5.2789 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601560573.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:53 Heat of formation + Delta-G solvation = 5.783495 kcal Electronic energy + Delta-G solvation = -22527.512925 eV Core-core repulsion = 19287.815169 eV Total energy + Delta-G solvation = -3239.697756 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.39633 -38.70476 -37.34036 -34.42303 -33.40006 -32.32098 -30.65731 -29.18042 -28.12219 -27.74239 -25.48901 -23.39120 -22.70994 -21.77189 -20.70085 -19.60868 -19.19727 -17.78488 -16.54851 -16.34243 -15.41072 -15.10387 -14.82807 -14.64132 -14.41372 -14.11499 -13.90710 -13.70386 -13.59726 -13.33901 -12.98799 -12.74570 -12.53551 -12.28135 -12.00847 -11.88672 -11.48728 -11.30334 -11.20234 -11.05279 -10.99204 -10.76742 -10.66605 -10.52268 -10.05217 -9.96221 -9.85364 -9.28255 -8.84529 -8.50454 -8.30497 -7.33419 -6.08199 -4.10340 2.64002 3.12578 3.26920 3.34735 3.38390 3.67613 3.85478 4.36822 4.41139 4.58136 4.63589 4.77003 4.80210 5.22219 5.27884 5.32131 5.34209 5.38661 5.42365 5.53542 5.59922 5.61468 5.63482 5.64648 5.69335 5.78543 5.84583 5.89266 6.00839 6.06650 6.29724 6.43313 6.45052 6.48452 6.64911 7.04570 7.21167 7.27271 7.72328 7.97824 8.00551 8.11174 8.45826 8.65942 8.97179 9.54316 11.02667 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025957 B = 0.003490 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.455562 B = 8020.978581 C = 8743.264116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.142 4.142 3 C -0.113 4.113 4 C -0.189 4.189 5 C 0.113 3.887 6 H 0.136 0.864 7 N -0.719 5.719 8 C 0.711 3.289 9 O -0.596 6.596 10 N -0.624 5.624 11 C 0.115 3.885 12 C 0.051 3.949 13 N -0.535 5.535 14 C 0.193 3.807 15 C -0.509 4.509 16 H 0.064 0.936 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.040 3.960 24 C 0.136 3.864 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.397 0.603 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.025 0.975 37 H 0.097 0.903 38 H -0.009 1.009 39 H 0.032 0.968 40 H 0.261 0.739 41 H 0.027 0.973 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.905 18.968 -7.925 21.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.144 4.144 3 C -0.170 4.170 4 C -0.228 4.228 5 C 0.005 3.995 6 H 0.154 0.846 7 N -0.374 5.374 8 C 0.413 3.587 9 O -0.475 6.475 10 N -0.361 5.361 11 C -0.008 4.008 12 C -0.078 4.078 13 N -0.260 5.260 14 C 0.068 3.932 15 C -0.548 4.548 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.090 4.090 24 C 0.013 3.987 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.234 0.766 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.009 0.991 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.045 0.955 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.456 19.085 -7.258 21.135 hybrid contribution -1.041 -0.938 -0.953 1.695 sum 4.415 18.147 -8.211 20.402 Atomic orbital electron populations 1.21325 0.91960 1.02101 1.02163 1.22086 0.95370 0.91957 1.04966 1.21337 0.99977 0.93624 1.02098 1.23780 1.02764 1.00870 0.95388 1.21545 0.96278 0.91074 0.90554 0.84628 1.44631 1.17904 1.42461 1.32450 1.15754 0.84481 0.78912 0.79565 1.90871 1.16074 1.69751 1.70841 1.47395 1.14049 1.47219 1.27456 1.21958 0.82702 0.97588 0.98588 1.22393 1.02575 0.91614 0.91234 1.62070 1.15624 1.19985 1.28307 1.19735 0.96643 0.80340 0.96461 1.21174 0.91451 0.92235 1.49915 0.91755 1.25003 0.98351 0.95883 0.95386 1.69966 1.34962 0.98118 1.50614 0.86443 0.85237 0.78159 0.77575 1.19633 1.21132 1.20987 1.22435 0.90796 0.94701 1.01035 1.21652 1.00436 0.91890 0.84727 0.91920 0.91799 0.92482 0.92248 0.91996 0.92036 0.88116 0.88581 0.76590 0.90531 0.91464 0.95712 0.88531 0.99125 0.94970 0.92906 0.95504 0.89999 0.89261 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 8.85 37.16 0.33 -0.56 16 2 C -0.14 -1.19 2.70 -154.51 -0.42 -1.61 16 3 C -0.11 -0.80 9.85 37.16 0.37 -0.43 16 4 C -0.19 -1.67 9.75 -26.73 -0.26 -1.93 16 5 C 0.11 1.23 6.11 -67.93 -0.42 0.82 16 6 H 0.14 1.67 7.43 -51.93 -0.39 1.29 16 7 N -0.72 -8.86 5.25 -58.68 -0.31 -9.17 16 8 C 0.71 11.30 8.31 -86.92 -0.72 10.58 16 9 O -0.60 -11.36 15.39 5.29 0.08 -11.28 16 10 N -0.62 -9.68 3.00 -177.91 -0.53 -10.22 16 11 C 0.12 1.63 6.57 -3.37 -0.02 1.61 16 12 C 0.05 0.93 5.47 -3.47 -0.02 0.91 16 13 N -0.53 -11.07 4.62 -235.48 -1.09 -12.15 16 14 C 0.19 4.89 4.72 -4.98 -0.02 4.87 16 15 C -0.51 -13.77 8.41 -34.44 -0.29 -14.06 16 16 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 17 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 19 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 24 C 0.14 2.17 6.61 -3.60 -0.02 2.14 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 27 H 0.06 0.41 7.61 -51.93 -0.40 0.01 16 28 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 29 H 0.06 0.38 7.92 -51.93 -0.41 -0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.79 8.05 -51.93 -0.42 0.37 16 32 H 0.10 0.84 8.05 -51.92 -0.42 0.42 16 33 H 0.40 4.16 5.23 -40.82 -0.21 3.94 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.75 5.73 -51.93 -0.30 0.46 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 1.83 6.67 -51.93 -0.35 1.49 16 38 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 39 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 1.43 7.99 -51.93 -0.41 1.01 16 43 H 0.09 1.43 7.04 -51.93 -0.37 1.06 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 348.76 15.07 5.26 5.26 Total: -1.00 -31.47 348.76 -9.86 -41.33 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.37 Total: 1.25 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -1.62 Total: 4.47 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -1.19 Total: -57.04 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.47 -9.86 -41.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601560573.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.114 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds