Wall clock time and date at job start Tue Mar 31 2020 05:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50694 * 120.00397 * 2 1 4 4 C 1.53003 * 109.47376 * 124.99798 * 3 2 1 5 5 H 1.09002 * 109.46729 * 305.00045 * 4 3 2 6 6 C 1.52991 * 109.47707 * 184.99962 * 4 3 2 7 7 N 1.46504 * 109.47239 * 64.99415 * 4 3 2 8 8 C 1.34769 * 120.00303 * 205.00101 * 7 4 3 9 9 O 1.21590 * 120.00304 * 4.98479 * 8 7 4 10 10 N 1.34775 * 120.00266 * 184.98422 * 8 7 4 11 11 C 1.47084 * 120.88582 * 174.49704 * 10 8 7 12 12 C 1.53700 * 108.27476 * 128.75316 * 11 10 8 13 13 N 1.46908 * 109.25575 * 54.08735 * 12 11 10 14 14 C 1.46896 * 111.00187 * 172.60429 * 13 12 11 15 15 C 1.50702 * 109.47174 * 294.30376 * 14 13 12 16 16 H 1.08008 * 119.99851 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00055 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99998 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00062 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46899 * 89.99902 * 19 17 15 21 21 H 1.48494 * 109.47228 * 209.99919 * 19 17 15 22 22 H 1.48501 * 109.47027 * 330.00466 * 19 17 15 23 23 C 1.46903 * 111.26800 * 296.75584 * 13 12 11 24 24 C 1.47088 * 120.87925 * 354.78020 * 10 8 7 25 25 H 1.07998 * 120.00846 * 180.02562 * 1 2 3 26 26 H 1.08008 * 119.99465 * 0.02562 * 1 2 3 27 27 H 1.08008 * 119.99465 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47428 * 5.00076 * 3 2 1 29 29 H 1.08996 * 109.47287 * 244.99537 * 3 2 1 30 30 H 1.09002 * 109.47093 * 299.99860 * 6 4 3 31 31 H 1.09000 * 109.47290 * 59.99600 * 6 4 3 32 32 H 1.09003 * 109.47746 * 179.97438 * 6 4 3 33 33 H 0.97000 * 119.99420 * 25.00829 * 7 4 3 34 34 H 1.08994 * 109.63043 * 248.52621 * 11 10 8 35 35 H 1.09001 * 109.62240 * 9.10854 * 11 10 8 36 36 H 1.08998 * 109.65296 * 294.08665 * 12 11 10 37 37 H 1.08992 * 109.44229 * 173.96247 * 12 11 10 38 38 H 1.09003 * 109.46847 * 54.30075 * 14 13 12 39 39 H 1.08995 * 109.47476 * 174.30231 * 14 13 12 40 40 H 0.96991 * 120.00080 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.48861 * 303.14473 * 23 13 12 42 42 H 1.08996 * 109.49134 * 183.06509 * 23 13 12 43 43 H 1.09000 * 109.62882 * 350.89330 * 24 10 8 44 44 H 1.08996 * 109.62899 * 111.47926 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 1 2.4882 1.1469 2.1060 6 6 3.7093 2.7043 1.2553 7 7 4.0546 0.2966 1.0003 8 6 4.6911 -0.2173 2.0713 9 8 4.3569 0.1121 3.1931 10 7 5.6980 -1.0964 1.8991 11 6 6.4845 -1.5776 3.0451 12 6 6.5158 -3.1135 2.9974 13 7 7.0061 -3.5474 1.6823 14 6 7.2182 -5.0007 1.6527 15 6 8.3343 -5.3648 2.5977 16 1 8.8362 -4.5936 3.1633 17 6 8.7147 -6.6823 2.7402 18 7 9.6890 -7.0000 3.5644 19 14 7.8462 -8.0162 1.7624 20 1 8.5440 -8.2138 0.4666 21 1 7.8639 -9.2856 2.5328 22 1 6.4404 -7.6095 1.5106 23 6 6.0961 -3.1262 0.6087 24 6 6.0435 -1.5955 0.5594 25 1 -0.5401 -0.9352 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6214 1.4024 -0.9313 30 1 4.2562 2.8905 0.3309 31 1 2.9508 3.4754 1.3903 32 1 4.4011 2.7244 2.0974 33 1 4.2716 -0.0195 0.1093 34 1 7.4995 -1.1854 2.9831 35 1 6.0178 -1.2483 3.9735 36 1 5.5118 -3.5058 3.1587 37 1 7.1817 -3.4871 3.7751 38 1 6.3031 -5.5077 1.9588 39 1 7.4834 -5.3087 0.6414 40 1 9.9564 -7.9269 3.6649 41 1 5.0979 -3.5184 0.8035 42 1 6.4578 -3.5087 -0.3456 43 1 5.2852 -1.2782 -0.1564 44 1 7.0170 -1.2051 0.2630 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601577061.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:10 Heat of formation + Delta-G solvation = 3.153064 kcal Electronic energy + Delta-G solvation = -22585.571419 eV Core-core repulsion = 19345.759598 eV Total energy + Delta-G solvation = -3239.811820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34652 -38.06678 -36.70549 -34.48294 -33.80282 -32.39171 -31.26838 -30.33930 -28.49246 -26.94452 -25.63757 -23.44087 -22.25245 -21.48066 -20.56864 -20.03654 -19.42203 -17.94169 -16.83285 -16.46835 -15.59116 -15.52025 -14.87790 -14.59227 -14.52894 -14.23062 -14.01024 -13.91010 -13.46004 -13.37125 -13.05431 -12.76344 -12.48050 -12.41147 -12.17996 -11.83626 -11.59705 -11.39033 -11.21018 -11.18094 -10.93727 -10.77948 -10.55358 -10.35127 -9.98232 -9.88112 -9.64182 -9.33903 -9.14408 -8.60746 -8.37236 -7.46326 -6.08819 -4.06793 2.00199 2.71442 3.25209 3.30653 3.33278 3.34409 3.89165 4.38333 4.48403 4.58913 4.66790 4.79739 5.05560 5.12427 5.19508 5.20889 5.29284 5.30467 5.36017 5.46719 5.50374 5.59323 5.66915 5.75897 5.80768 5.91136 5.98025 6.04113 6.07805 6.35147 6.37210 6.44044 6.50948 6.53178 6.61833 6.81181 6.92942 7.06028 7.52309 7.79593 7.94903 8.02621 8.59979 8.69201 8.99025 9.52432 11.04126 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026648 B = 0.003600 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.473588 B = 7775.863878 C = 8386.375304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.151 4.151 3 C -0.101 4.101 4 C 0.163 3.837 5 H 0.089 0.911 6 C -0.164 4.164 7 N -0.745 5.745 8 C 0.708 3.292 9 O -0.595 6.595 10 N -0.626 5.626 11 C 0.133 3.867 12 C 0.050 3.950 13 N -0.526 5.526 14 C 0.163 3.837 15 C -0.511 4.511 16 H 0.082 0.918 17 C 0.069 3.931 18 N -0.899 5.899 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.269 1.269 23 C 0.038 3.962 24 C 0.120 3.880 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.393 0.607 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.025 0.975 37 H 0.102 0.898 38 H -0.012 1.012 39 H 0.025 0.975 40 H 0.264 0.736 41 H 0.027 0.973 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.628 16.384 -9.909 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.169 4.169 3 C -0.139 4.139 4 C 0.057 3.943 5 H 0.107 0.893 6 C -0.222 4.222 7 N -0.403 5.403 8 C 0.409 3.591 9 O -0.474 6.474 10 N -0.364 5.364 11 C 0.010 3.990 12 C -0.079 4.079 13 N -0.250 5.250 14 C 0.037 3.963 15 C -0.550 4.550 16 H 0.100 0.900 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.702 3.298 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.194 1.194 23 C -0.092 4.092 24 C -0.004 4.004 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.229 0.771 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.043 0.957 37 H 0.120 0.880 38 H 0.006 0.994 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.308 16.704 -9.079 23.795 hybrid contribution -1.013 -1.560 -0.929 2.079 sum -15.322 15.144 -10.008 23.754 Atomic orbital electron populations 1.23846 0.95915 1.01837 1.01519 1.22916 0.96037 0.98474 0.99499 1.21094 0.98115 0.96221 0.98433 1.20742 0.87712 0.86748 0.99064 0.89263 1.22211 1.01301 0.96249 1.02461 1.45368 1.43029 1.43436 1.08436 1.15839 0.79491 0.79151 0.84573 1.90886 1.68203 1.65505 1.22782 1.47427 1.34045 1.45904 1.08994 1.21827 0.94794 0.94121 0.88228 1.22486 0.98776 0.93125 0.93486 1.61898 1.44063 1.17115 1.01943 1.20174 0.96187 0.82402 0.97570 1.21014 1.16440 0.93761 1.23749 0.90004 1.24896 0.94820 0.98406 0.95144 1.69887 1.28543 1.18494 1.36808 0.86867 0.80593 0.81807 0.80500 1.20133 1.21170 1.19380 1.22431 0.95401 0.94035 0.97317 1.21722 1.00611 0.94779 0.83305 0.88540 0.88609 0.87375 0.89904 0.90471 0.92552 0.91797 0.91839 0.77051 0.90988 0.89149 0.95669 0.87969 0.99392 0.95693 0.92604 0.95531 0.90137 0.91233 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.50 14.32 29.02 0.42 -1.09 16 2 C -0.15 -1.25 9.25 -36.03 -0.33 -1.59 16 3 C -0.10 -0.71 5.20 -27.88 -0.15 -0.85 16 4 C 0.16 1.56 2.60 -67.93 -0.18 1.38 16 5 H 0.09 1.08 7.51 -51.93 -0.39 0.69 16 6 C -0.16 -1.42 9.48 37.15 0.35 -1.07 16 7 N -0.74 -8.15 4.68 -58.68 -0.27 -8.42 16 8 C 0.71 10.71 8.27 -86.93 -0.72 9.99 16 9 O -0.60 -11.16 15.43 5.29 0.08 -11.08 16 10 N -0.63 -9.36 3.00 -177.90 -0.53 -9.89 16 11 C 0.13 2.20 6.64 -3.36 -0.02 2.18 16 12 C 0.05 0.96 5.47 -3.46 -0.02 0.94 16 13 N -0.53 -10.50 4.62 -235.46 -1.09 -11.59 16 14 C 0.16 3.83 3.79 -4.98 -0.02 3.81 16 15 C -0.51 -14.17 8.96 -34.44 -0.31 -14.48 16 16 H 0.08 2.46 7.37 -52.48 -0.39 2.07 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 19 Si 0.87 21.17 27.47 -169.99 -4.67 16.50 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 23 C 0.04 0.59 5.62 -3.70 -0.02 0.57 16 24 C 0.12 1.51 6.53 -3.60 -0.02 1.49 16 25 H 0.10 0.71 8.06 -52.49 -0.42 0.29 16 26 H 0.10 0.62 7.84 -52.48 -0.41 0.21 16 27 H 0.11 0.98 8.03 -52.48 -0.42 0.56 16 28 H 0.08 0.49 7.79 -51.93 -0.40 0.08 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.39 3.44 6.14 -40.82 -0.25 3.19 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.09 1.53 7.04 -51.93 -0.37 1.17 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.10 2.15 6.67 -51.93 -0.35 1.81 16 38 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 39 H 0.03 0.58 7.40 -51.93 -0.38 0.20 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 1.16 7.99 -51.93 -0.41 0.75 16 43 H 0.07 0.65 5.74 -51.93 -0.30 0.35 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 349.75 15.07 5.27 5.27 Total: -1.00 -32.46 349.75 -8.98 -41.44 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.42 Total: 0.99 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -1.12 Total: 3.16 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -1.12 Total: -56.29 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.46 -8.98 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601577061.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.593 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds