Wall clock time and date at job start Tue Mar 31 2020 05:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53782 * 113.61763 * 2 1 4 4 C 1.53783 * 87.08146 * 89.11607 * 3 2 1 5 5 N 1.46494 * 113.61529 * 139.98012 * 4 3 2 6 6 C 1.34775 * 120.00357 * 156.52862 * 5 4 3 7 7 O 1.21594 * 119.99764 * 4.98044 * 6 5 4 8 8 N 1.34771 * 120.00189 * 184.71178 * 6 5 4 9 9 C 1.47079 * 120.88153 * 174.75126 * 8 6 5 10 10 C 1.53697 * 108.27965 * 128.75399 * 9 8 6 11 11 N 1.46902 * 109.25665 * 54.08031 * 10 9 8 12 12 C 1.46898 * 111.00305 * 172.60981 * 11 10 9 13 13 C 1.50705 * 109.46995 * 59.38545 * 12 11 10 14 14 H 1.07998 * 119.99877 * 355.03844 * 13 12 11 15 15 C 1.37868 * 119.99830 * 175.03052 * 13 12 11 16 16 N 1.31514 * 120.00203 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99949 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47444 * 90.00124 * 17 15 13 19 19 H 1.48500 * 109.47242 * 210.00422 * 17 15 13 20 20 H 1.48505 * 109.47094 * 330.00079 * 17 15 13 21 21 C 1.46897 * 111.26900 * 296.76456 * 11 10 9 22 22 C 1.47077 * 120.88117 * 355.03235 * 8 6 5 23 23 C 1.53784 * 87.17488 * 25.38881 * 4 3 2 24 24 H 1.09000 * 109.47079 * 59.99796 * 1 2 3 25 25 H 1.08992 * 109.47487 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46856 * 300.00622 * 1 2 3 27 27 H 1.08994 * 112.84474 * 228.79967 * 2 1 3 28 28 H 1.08995 * 113.61231 * 334.56700 * 3 2 1 29 29 H 1.08996 * 113.68769 * 203.67309 * 3 2 1 30 30 H 1.08999 * 113.61336 * 270.80323 * 4 3 2 31 31 H 0.97004 * 119.99711 * 336.53160 * 5 4 3 32 32 H 1.08999 * 109.63555 * 248.52308 * 9 8 6 33 33 H 1.09003 * 109.62955 * 9.10647 * 9 8 6 34 34 H 1.09004 * 109.64584 * 294.08171 * 10 9 8 35 35 H 1.08998 * 109.44852 * 173.96326 * 10 9 8 36 36 H 1.08998 * 109.47264 * 179.38785 * 12 11 10 37 37 H 1.09000 * 109.46845 * 299.38831 * 12 11 10 38 38 H 0.97002 * 120.00009 * 179.97438 * 16 15 13 39 39 H 1.09007 * 109.49496 * 303.13781 * 21 11 10 40 40 H 1.09003 * 109.49315 * 183.06319 * 21 11 10 41 41 H 1.09000 * 109.63139 * 350.89613 * 22 8 6 42 42 H 1.08999 * 109.63086 * 111.48375 * 22 8 6 43 43 H 1.09004 * 113.60933 * 89.15662 * 23 4 3 44 44 H 1.08995 * 113.61818 * 220.06267 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1461 1.4090 0.0000 4 6 2.0930 1.3468 1.5357 5 7 3.2741 1.9182 2.1873 6 6 3.1930 2.3674 3.4554 7 8 2.1664 2.2166 4.0893 8 7 4.2515 2.9790 4.0226 9 6 4.1488 3.5780 5.3620 10 6 5.3101 3.0474 6.2177 11 7 6.5790 3.2983 5.5214 12 6 7.7247 2.9665 6.3788 13 6 7.6540 1.5133 6.7717 14 1 6.7991 0.9179 6.4868 15 6 8.6806 0.9439 7.4945 16 7 9.7214 1.6690 7.8417 17 14 8.5933 -0.8576 7.9808 18 1 9.2138 -1.6881 6.9175 19 1 9.3235 -1.0617 9.2577 20 1 7.1730 -1.2553 8.1539 21 6 6.6432 2.5651 4.2500 22 6 5.5383 3.0706 3.3162 23 6 2.1448 -0.1842 1.3995 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9532 -0.6616 -0.7558 28 1 1.4946 2.1703 -0.4289 29 1 3.1591 1.4440 -0.4008 30 1 1.1575 1.7163 1.9555 31 1 4.1145 1.9732 1.7061 32 1 4.2137 4.6632 5.2839 33 1 3.1990 3.2970 5.8170 34 1 5.1883 1.9760 6.3770 35 1 5.3157 3.5598 7.1797 36 1 8.6511 3.1512 5.8350 37 1 7.6995 3.5867 7.2748 38 1 10.4436 1.2684 8.3506 39 1 6.5028 1.5004 4.4366 40 1 7.6154 2.7281 3.7848 41 1 5.5075 2.4540 2.4179 42 1 5.7342 4.1080 3.0452 43 1 3.1575 -0.5869 1.3819 44 1 1.4923 -0.7071 2.0986 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601579816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:00 Heat of formation + Delta-G solvation = -0.608975 kcal Electronic energy + Delta-G solvation = -22727.054656 eV Core-core repulsion = 19487.079701 eV Total energy + Delta-G solvation = -3239.974955 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45033 -39.08779 -37.38334 -34.42287 -33.61723 -32.25878 -30.57458 -29.03421 -27.85819 -25.90594 -25.35772 -23.72093 -22.96514 -22.25280 -20.62694 -19.52884 -18.86250 -17.73060 -16.79647 -16.34911 -15.47621 -15.11800 -14.92224 -14.74802 -14.39092 -14.01289 -13.81791 -13.69323 -13.55571 -13.18917 -12.89649 -12.60875 -12.48264 -12.12167 -11.85972 -11.69816 -11.30078 -11.15211 -11.04798 -10.98479 -10.66948 -10.64723 -10.61362 -10.41283 -10.26595 -9.95766 -9.80760 -9.63806 -9.01194 -8.47819 -8.26627 -7.26045 -6.07642 -4.17081 2.83836 3.24330 3.31766 3.35652 3.36447 4.02283 4.28798 4.30593 4.37201 4.60109 4.71806 4.88984 5.17134 5.22624 5.30678 5.32835 5.41199 5.45183 5.49115 5.54342 5.56416 5.65941 5.73794 5.80268 5.88440 5.91943 5.98246 6.01721 6.14783 6.18691 6.41208 6.60464 6.60619 6.73776 6.76539 7.15818 7.19575 7.46779 7.84085 7.94838 8.11777 8.17557 8.23908 8.77744 8.93067 9.50528 10.97432 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021711 B = 0.003852 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.352303 B = 7267.536405 C = 7887.048908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.145 3.855 5 N -0.740 5.740 6 C 0.707 3.293 7 O -0.598 6.598 8 N -0.624 5.624 9 C 0.132 3.868 10 C 0.049 3.951 11 N -0.540 5.540 12 C 0.188 3.812 13 C -0.552 4.552 14 H 0.056 0.944 15 C 0.066 3.934 16 N -0.890 5.890 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.050 3.950 22 C 0.116 3.884 23 C -0.152 4.152 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.395 0.605 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.030 0.970 38 H 0.263 0.737 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.042 0.414 -16.144 20.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.132 4.132 3 C -0.182 4.182 4 C 0.039 3.961 5 N -0.396 5.396 6 C 0.409 3.591 7 O -0.477 6.477 8 N -0.361 5.361 9 C 0.009 3.991 10 C -0.080 4.080 11 N -0.264 5.264 12 C 0.062 3.938 13 C -0.591 4.591 14 H 0.074 0.926 15 C -0.137 4.137 16 N -0.529 5.529 17 Si 0.716 3.284 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.079 4.079 22 C -0.008 4.008 23 C -0.191 4.191 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.129 0.871 31 H 0.232 0.768 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.593 0.842 -15.665 20.758 hybrid contribution 0.686 -1.994 0.313 2.132 sum -12.907 -1.152 -15.353 20.090 Atomic orbital electron populations 1.21630 0.93745 1.01999 1.02078 1.22188 0.95929 0.97123 0.97951 1.23428 1.01660 0.97532 0.95627 1.22338 0.89546 0.92840 0.91358 1.45317 1.13692 1.67043 1.13590 1.15896 0.83614 0.78068 0.81555 1.90871 1.30492 1.63634 1.62742 1.47368 1.10310 1.59269 1.19131 1.21812 0.99652 0.96832 0.80773 1.22359 0.89237 0.99912 0.96507 1.62480 1.03526 1.55523 1.04889 1.19766 0.87681 0.94466 0.91864 1.21751 1.05016 0.96839 1.35462 0.92577 1.24949 0.95249 0.97832 0.95640 1.69938 1.08491 1.36055 1.38387 0.86656 0.78199 0.85483 0.78080 1.20643 1.21046 1.19935 1.22214 0.97072 0.96998 0.91657 1.21831 0.83213 1.01268 0.94450 1.23584 1.01597 0.97363 0.96555 0.92339 0.92324 0.92203 0.90214 0.90788 0.89708 0.87076 0.76836 0.91607 0.89434 0.93846 0.90391 0.94693 0.95178 0.92754 0.93989 0.90436 0.91415 0.91097 0.89831 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.59 37.16 0.36 -0.63 16 2 C -0.11 -0.88 4.55 -89.71 -0.41 -1.29 16 3 C -0.14 -1.14 7.42 -25.92 -0.19 -1.33 16 4 C 0.15 1.59 3.83 -67.12 -0.26 1.33 16 5 N -0.74 -9.25 5.27 -57.88 -0.31 -9.56 16 6 C 0.71 11.67 8.31 -86.92 -0.72 10.95 16 7 O -0.60 -11.91 15.46 5.28 0.08 -11.83 16 8 N -0.62 -10.02 3.00 -177.91 -0.53 -10.56 16 9 C 0.13 2.22 6.64 -3.36 -0.02 2.20 16 10 C 0.05 0.96 5.17 -3.46 -0.02 0.94 16 11 N -0.54 -11.11 4.83 -235.46 -1.14 -12.25 16 12 C 0.19 4.69 5.11 -4.97 -0.03 4.66 16 13 C -0.55 -14.95 7.76 -34.44 -0.27 -15.22 16 14 H 0.06 1.54 5.88 -52.49 -0.31 1.23 16 15 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 16 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 17 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.05 0.91 5.25 -3.70 -0.02 0.89 16 22 C 0.12 1.63 6.54 -3.60 -0.02 1.61 16 23 C -0.15 -1.53 7.45 -25.82 -0.19 -1.72 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.47 7.34 -51.93 -0.38 0.09 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 29 H 0.08 0.60 8.11 -51.93 -0.42 0.17 16 30 H 0.11 1.39 7.08 -51.93 -0.37 1.03 16 31 H 0.40 4.07 6.25 -40.82 -0.26 3.82 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.51 7.04 -51.93 -0.37 1.14 16 34 H 0.04 0.96 6.61 -51.93 -0.34 0.62 16 35 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 36 H 0.03 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.04 0.86 7.12 -51.92 -0.37 0.49 16 40 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 41 H 0.07 0.76 5.74 -51.93 -0.30 0.46 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 342.68 15.07 5.16 5.16 Total: -1.00 -31.36 342.68 -10.21 -41.57 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.30 Total: 2.04 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.89 Total: 4.13 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -1.24 Total: -57.47 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.36 -10.21 -41.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601579816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.960 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds