Wall clock time and date at job start Tue Mar 31 2020 05:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99754 * 2 1 4 4 H 1.48493 * 109.47308 * 270.00358 * 3 2 1 5 5 H 1.48505 * 109.47027 * 30.00187 * 3 2 1 6 6 H 1.48502 * 109.47191 * 150.00010 * 3 2 1 7 7 C 1.37876 * 120.00787 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99349 * 359.97438 * 7 2 1 9 9 C 1.50690 * 120.00566 * 179.97438 * 7 2 1 10 10 N 1.46900 * 109.47280 * 179.97438 * 9 7 2 11 11 C 1.46904 * 111.00278 * 169.99948 * 10 9 7 12 12 C 1.53229 * 109.34401 * 187.25364 * 11 10 9 13 13 N 1.47088 * 108.52032 * 306.17186 * 12 11 10 14 14 C 1.34770 * 120.87916 * 231.18180 * 13 12 11 15 15 O 1.21593 * 120.00097 * 184.99388 * 14 13 12 16 16 N 1.34781 * 120.00171 * 4.99621 * 14 13 12 17 17 C 1.46501 * 119.99855 * 174.91377 * 16 14 13 18 18 C 1.53005 * 109.46846 * 180.02562 * 17 16 14 19 19 C 1.53005 * 109.46786 * 180.02562 * 18 17 16 20 20 C 1.52995 * 117.49636 * 243.62093 * 19 18 17 21 21 C 1.52992 * 60.00159 * 252.51352 * 20 19 18 22 22 C 1.47078 * 118.23790 * 51.45649 * 13 12 11 23 23 C 1.46896 * 111.00166 * 294.30062 * 10 9 7 24 24 H 0.96999 * 120.00409 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47308 * 59.99678 * 9 7 2 26 26 H 1.08998 * 109.47441 * 299.99709 * 9 7 2 27 27 H 1.09006 * 109.49196 * 67.29175 * 11 10 9 28 28 H 1.08999 * 109.49244 * 307.21447 * 11 10 9 29 29 H 1.08995 * 109.63441 * 186.45998 * 12 11 10 30 30 H 1.09004 * 109.62865 * 65.87660 * 12 11 10 31 31 H 0.96994 * 120.00258 * 354.92265 * 16 14 13 32 32 H 1.08997 * 109.47049 * 60.00110 * 17 16 14 33 33 H 1.09001 * 109.47078 * 300.00012 * 17 16 14 34 34 H 1.09000 * 109.46870 * 60.00153 * 18 17 16 35 35 H 1.08994 * 109.46804 * 300.00052 * 18 17 16 36 36 H 1.08998 * 115.55310 * 29.33042 * 19 18 17 37 37 H 1.09004 * 117.50442 * 359.97438 * 20 19 18 38 38 H 1.09001 * 117.49798 * 145.02297 * 20 19 18 39 39 H 1.09000 * 117.50304 * 252.51069 * 21 20 19 40 40 H 1.09008 * 117.50034 * 107.48847 * 21 20 19 41 41 H 1.08999 * 109.63021 * 68.25141 * 22 13 12 42 42 H 1.08992 * 109.62825 * 188.83077 * 22 13 12 43 43 H 1.09006 * 109.49446 * 292.71113 * 23 10 9 44 44 H 1.09002 * 109.49201 * 52.78543 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 4.0013 -2.5788 -0.0010 11 6 5.4501 -2.6250 -0.2397 12 6 5.8898 -4.0826 -0.4123 13 7 5.4267 -4.8515 0.7529 14 6 6.2771 -5.6312 1.4496 15 8 5.8599 -6.3297 2.3532 16 7 7.5899 -5.6366 1.1447 17 6 8.5307 -6.3968 1.9713 18 6 9.9460 -6.2355 1.4127 19 6 10.9284 -7.0300 2.2756 20 6 12.0044 -6.2437 3.0270 21 6 12.3852 -7.0922 1.8122 22 6 4.0096 -4.7517 1.1339 23 6 3.6452 -3.2631 1.2492 24 1 -0.4851 0.8400 -0.0004 25 1 3.8752 -0.6802 0.8888 26 1 3.8745 -0.6799 -0.8911 27 1 5.9729 -2.1855 0.6099 28 1 5.6878 -2.0639 -1.1434 29 1 6.9768 -4.1323 -0.4752 30 1 5.4486 -4.4931 -1.3207 31 1 7.9119 -5.1370 0.3782 32 1 8.2536 -7.4509 1.9610 33 1 8.4995 -6.0229 2.9947 34 1 10.2227 -5.1812 1.4234 35 1 9.9774 -6.6091 0.3893 36 1 10.5173 -7.9137 2.7636 37 1 12.0128 -5.1604 2.9064 38 1 12.3014 -6.6099 4.0098 39 1 12.9327 -8.0167 1.9956 40 1 12.6437 -6.5671 0.8926 41 1 3.3912 -5.2252 0.3714 42 1 3.8530 -5.2438 2.0938 43 1 4.1931 -2.8147 2.0780 44 1 2.5740 -3.1647 1.4253 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601586409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:06 Heat of formation + Delta-G solvation = 8.427424 kcal Electronic energy + Delta-G solvation = -22030.538084 eV Core-core repulsion = 18790.954977 eV Total energy + Delta-G solvation = -3239.583107 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25718 -38.24884 -37.61227 -34.99358 -34.45946 -32.38567 -31.07861 -30.16620 -28.50538 -25.71552 -23.98707 -23.04514 -22.72861 -21.83785 -21.05947 -20.52252 -19.23097 -18.00829 -16.83808 -16.28857 -16.07924 -15.64677 -15.01460 -14.66244 -14.59753 -14.52258 -14.24988 -13.90961 -13.71283 -13.49248 -13.01278 -12.52242 -12.35469 -12.13141 -12.03183 -11.84245 -11.74745 -11.57668 -11.23948 -10.94661 -10.79998 -10.66961 -10.55983 -10.37581 -10.30810 -9.99581 -9.89282 -9.34355 -9.16737 -8.61065 -8.37480 -7.46878 -6.08989 -4.07032 2.68922 3.24970 3.29665 3.33043 3.34039 3.39032 3.85929 4.29134 4.38030 4.47392 4.52418 4.60534 4.80388 4.97651 5.11735 5.16084 5.21044 5.24445 5.26158 5.30070 5.35558 5.52167 5.58010 5.66377 5.71520 5.75541 5.78618 5.86509 5.92346 5.97833 6.07545 6.36075 6.43515 6.50408 6.60204 6.80160 6.92331 7.03680 7.51967 7.78960 7.94385 8.00439 8.59684 8.66667 8.98893 9.52169 11.03884 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030884 B = 0.002980 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.403055 B = 9393.929568 C = 9921.725044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.512 4.512 8 H 0.082 0.918 9 C 0.163 3.837 10 N -0.526 5.526 11 C 0.038 3.962 12 C 0.119 3.881 13 N -0.626 5.626 14 C 0.707 3.293 15 O -0.595 6.595 16 N -0.752 5.752 17 C 0.142 3.858 18 C -0.101 4.101 19 C -0.150 4.150 20 C -0.180 4.180 21 C -0.180 4.180 22 C 0.134 3.866 23 C 0.050 3.950 24 H 0.264 0.736 25 H -0.012 1.012 26 H 0.025 0.975 27 H 0.027 0.973 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.394 0.606 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.025 0.975 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.742 -11.319 1.219 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.037 3.963 10 N -0.251 5.251 11 C -0.092 4.092 12 C -0.005 4.005 13 N -0.364 5.364 14 C 0.408 3.592 15 O -0.474 6.474 16 N -0.411 5.411 17 C 0.017 3.983 18 C -0.138 4.138 19 C -0.169 4.169 20 C -0.217 4.217 21 C -0.217 4.217 22 C 0.011 3.989 23 C -0.079 4.079 24 H 0.074 0.926 25 H 0.006 0.994 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.230 0.770 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.043 0.957 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 22.036 -11.943 1.525 25.111 hybrid contribution 1.012 1.768 0.188 2.046 sum 23.048 -10.176 1.713 25.253 Atomic orbital electron populations 1.69885 1.06110 1.26900 1.50802 1.24898 0.94738 0.98851 0.94798 0.86867 0.80266 0.84073 0.78550 1.20139 1.21181 1.19371 1.21010 0.88596 0.94791 1.50590 0.89999 1.20171 0.97217 0.83804 0.95114 1.61892 1.09694 1.19201 1.34263 1.22435 0.90987 0.95008 1.00771 1.21737 0.97787 0.92051 0.88884 1.47426 1.10197 1.47420 1.31309 1.15827 0.80817 0.80511 0.82014 1.90893 1.76910 1.45543 1.34058 1.45272 1.06049 1.55703 1.34054 1.21121 0.86470 0.96295 0.94380 1.21372 0.93035 1.00235 0.99196 1.22169 0.90141 1.01749 1.02840 1.23064 1.03443 0.98627 0.96580 1.22973 0.97543 1.02295 0.98901 1.21828 0.78526 0.97052 1.01513 1.22500 1.02969 0.92051 0.90378 0.92600 0.99396 0.95682 0.95487 0.90112 0.91207 0.90479 0.76952 0.91600 0.91714 0.91147 0.90875 0.87355 0.88695 0.88781 0.88766 0.88758 0.90943 0.89200 0.95682 0.87894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.51 -14.15 8.96 -34.45 -0.31 -14.46 16 8 H 0.08 2.46 7.37 -52.48 -0.39 2.07 16 9 C 0.16 3.83 3.79 -4.98 -0.02 3.81 16 10 N -0.53 -10.49 4.62 -235.47 -1.09 -11.58 16 11 C 0.04 0.59 5.62 -3.70 -0.02 0.57 16 12 C 0.12 1.52 6.59 -3.60 -0.02 1.49 16 13 N -0.63 -9.50 3.00 -177.91 -0.53 -10.03 16 14 C 0.71 10.99 8.31 -86.92 -0.72 10.27 16 15 O -0.60 -11.43 15.83 5.28 0.08 -11.34 16 16 N -0.75 -8.52 5.47 -65.22 -0.36 -8.88 16 17 C 0.14 1.39 5.64 -4.04 -0.02 1.37 16 18 C -0.10 -0.69 5.61 -26.73 -0.15 -0.84 16 19 C -0.15 -1.00 5.74 -90.62 -0.52 -1.52 16 20 C -0.18 -1.13 10.18 -26.74 -0.27 -1.40 16 21 C -0.18 -1.06 10.25 -26.74 -0.27 -1.33 16 22 C 0.13 2.23 6.61 -3.37 -0.02 2.21 16 23 C 0.05 0.95 5.47 -3.47 -0.02 0.93 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 26 H 0.03 0.58 7.40 -51.93 -0.38 0.20 16 27 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 1.16 7.99 -51.93 -0.41 0.74 16 29 H 0.07 0.65 5.63 -51.93 -0.29 0.35 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.39 3.49 5.97 -40.82 -0.24 3.24 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.46 7.88 -51.93 -0.41 0.05 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.11 0.72 8.07 -51.93 -0.42 0.30 16 37 H 0.09 0.58 8.03 -51.93 -0.42 0.17 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.09 1.53 7.09 -51.93 -0.37 1.16 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 2.16 6.67 -51.93 -0.35 1.81 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -32.72 348.35 -10.46 -43.18 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.45 Total: 0.34 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -2.47 Total: 2.95 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -1.21 Total: -56.83 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.72 -10.46 -43.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601586409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.607 kcal (2) G-P(sol) polarization free energy of solvation -32.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds