Wall clock time and date at job start Tue Mar 31 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50708 * 119.99918 * 2 1 4 4 C 1.30997 * 120.00153 * 179.97438 * 2 1 3 5 5 C 1.50699 * 119.99829 * 4.98476 * 4 2 1 6 6 N 1.46510 * 109.46817 * 125.26664 * 5 4 2 7 7 C 1.34777 * 119.99842 * 180.02562 * 6 5 4 8 8 O 1.21588 * 119.99953 * 354.94370 * 7 6 5 9 9 N 1.34774 * 120.00176 * 174.94702 * 7 6 5 10 10 C 1.47075 * 120.88701 * 184.70663 * 9 7 6 11 11 C 1.53690 * 108.27669 * 128.75237 * 10 9 7 12 12 N 1.46902 * 109.25730 * 54.08826 * 11 10 9 13 13 C 1.46900 * 110.99924 * 172.60465 * 12 11 10 14 14 C 1.50689 * 109.47327 * 294.29962 * 13 12 11 15 15 H 1.08004 * 120.00220 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00268 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99903 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00421 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47293 * 89.99996 * 18 16 14 20 20 H 1.48501 * 109.47459 * 210.00096 * 18 16 14 21 21 H 1.48501 * 109.47308 * 330.00430 * 18 16 14 22 22 C 1.46899 * 111.26588 * 296.75443 * 12 11 10 23 23 C 1.47085 * 120.87661 * 4.98524 * 9 7 6 24 24 H 1.09008 * 109.47393 * 244.60122 * 1 2 3 25 25 H 1.09004 * 109.47075 * 4.59599 * 1 2 3 26 26 H 1.08997 * 109.47534 * 124.59639 * 1 2 3 27 27 H 1.08999 * 109.46716 * 240.00207 * 3 2 1 28 28 H 1.08998 * 109.46739 * 359.97438 * 3 2 1 29 29 H 1.08992 * 109.47068 * 119.99937 * 3 2 1 30 30 H 1.07991 * 120.00143 * 184.98989 * 4 2 1 31 31 H 1.08994 * 109.47462 * 245.26615 * 5 4 2 32 32 H 1.09003 * 109.47310 * 5.27120 * 5 4 2 33 33 H 0.96995 * 120.00102 * 0.02562 * 6 5 4 34 34 H 1.08990 * 109.63001 * 248.52724 * 10 9 7 35 35 H 1.09002 * 109.62441 * 9.10698 * 10 9 7 36 36 H 1.08998 * 109.65294 * 294.08417 * 11 10 9 37 37 H 1.09001 * 109.42372 * 173.95100 * 11 10 9 38 38 H 1.08998 * 109.46991 * 54.30787 * 13 12 11 39 39 H 1.09007 * 109.46744 * 174.30159 * 13 12 11 40 40 H 0.96996 * 120.00049 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.49502 * 303.14013 * 22 12 11 42 42 H 1.08998 * 109.49053 * 183.06032 * 22 12 11 43 43 H 1.08999 * 109.62966 * 350.89989 * 23 9 7 44 44 H 1.09009 * 109.62690 * 111.47652 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4128 -2.4371 -0.1123 6 7 1.9443 -3.2102 -1.2376 7 6 1.4232 -4.4180 -1.5313 8 8 0.5761 -4.9066 -0.8087 9 7 1.8411 -5.0842 -2.6258 10 6 1.2143 -6.3544 -3.0217 11 6 0.8181 -6.2552 -4.5033 12 7 1.9945 -5.8707 -5.2947 13 6 1.7049 -5.9346 -6.7334 14 6 1.4482 -7.3652 -7.1311 15 1 1.4951 -8.1487 -6.3892 16 6 1.1536 -7.6741 -8.4421 17 7 1.0970 -6.7202 -9.3457 18 14 0.8361 -9.4476 -8.9353 19 1 -0.6120 -9.7476 -8.7995 20 1 1.2536 -9.6517 -10.3457 21 1 1.6140 -10.3538 -8.0527 22 6 2.4801 -4.5376 -4.9141 23 6 2.9403 -4.5632 -3.4527 24 1 -0.3634 -0.4408 0.9284 25 1 -0.3633 1.0244 -0.0823 26 1 -0.3634 -0.5835 -0.8459 27 1 2.8871 1.3629 -0.8900 28 1 1.5521 2.1336 -0.0005 29 1 2.8871 1.3629 0.8899 30 1 3.2388 -1.1362 0.0819 31 1 1.5335 -3.0067 0.8091 32 1 0.3547 -2.2346 -0.2783 33 1 2.6711 -2.8529 -1.7713 34 1 1.9225 -7.1712 -2.8827 35 1 0.3259 -6.5291 -2.4147 36 1 0.0371 -5.5046 -4.6245 37 1 0.4499 -7.2224 -4.8456 38 1 0.8235 -5.3324 -6.9537 39 1 2.5573 -5.5493 -7.2930 40 1 0.8893 -6.9374 -10.2679 41 1 1.6760 -3.8109 -5.0295 42 1 3.3173 -4.2591 -5.5541 43 1 3.1937 -3.5531 -3.1307 44 1 3.8114 -5.2112 -3.3543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601596494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:41 Heat of formation + Delta-G solvation = -4.297683 kcal Electronic energy + Delta-G solvation = -22145.632544 eV Core-core repulsion = 18905.497635 eV Total energy + Delta-G solvation = -3240.134909 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19683 -37.88479 -37.03433 -34.44657 -34.13105 -32.37143 -30.75446 -29.28925 -28.15416 -27.79366 -25.50442 -24.19004 -23.01438 -22.09185 -20.68731 -19.50428 -18.40036 -17.54253 -16.47870 -16.20155 -15.78378 -15.02419 -14.92025 -14.59635 -14.43415 -14.40178 -13.97771 -13.81816 -13.65777 -13.40830 -13.19675 -12.80335 -12.42940 -12.20952 -12.18585 -11.98413 -11.89901 -11.29075 -11.21200 -11.09194 -10.81886 -10.74122 -10.61385 -10.49852 -10.01387 -9.84767 -9.28083 -9.26727 -8.95968 -8.48154 -8.28852 -7.31741 -6.06058 -4.07764 1.66096 2.90111 3.30749 3.34516 3.37128 3.41365 4.02260 4.39241 4.42432 4.57861 4.79520 4.92384 5.15277 5.20647 5.23245 5.26903 5.29134 5.38175 5.42189 5.44473 5.54600 5.57814 5.66062 5.68639 5.74604 5.85030 5.95799 6.05785 6.20736 6.29107 6.38593 6.43955 6.57351 6.60189 6.71854 7.09738 7.22505 7.28771 7.74822 8.01087 8.05043 8.13402 8.48196 8.71661 8.99671 9.56884 11.04837 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030874 B = 0.003066 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.691901 B = 9129.682171 C = 9539.911508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 C -0.120 4.120 4 C -0.190 4.190 5 C 0.166 3.834 6 N -0.747 5.747 7 C 0.707 3.293 8 O -0.598 6.598 9 N -0.625 5.625 10 C 0.133 3.867 11 C 0.051 3.949 12 N -0.535 5.535 13 C 0.194 3.806 14 C -0.509 4.509 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.272 1.272 22 C 0.041 3.959 23 C 0.119 3.881 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.395 0.605 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.097 0.903 38 H -0.009 1.009 39 H 0.031 0.969 40 H 0.262 0.738 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 13.628 17.104 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.107 4.107 3 C -0.177 4.177 4 C -0.209 4.209 5 C 0.043 3.957 6 N -0.405 5.405 7 C 0.408 3.592 8 O -0.477 6.477 9 N -0.362 5.362 10 C 0.010 3.990 11 C -0.079 4.079 12 N -0.260 5.260 13 C 0.069 3.931 14 C -0.547 4.547 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.089 4.089 23 C -0.005 4.005 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.232 0.768 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.042 0.958 37 H 0.115 0.885 38 H 0.008 0.992 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.054 12.962 17.529 22.014 hybrid contribution -0.324 -0.051 -0.951 1.006 sum 2.730 12.911 16.578 21.189 Atomic orbital electron populations 1.20990 0.92110 1.02606 1.02625 1.21730 0.96060 0.95005 0.97891 1.20900 0.99996 0.94519 1.02251 1.22632 0.99927 0.93271 1.05061 1.20156 0.97308 0.89031 0.89222 1.45252 1.41171 1.18838 1.35270 1.15833 0.81478 0.80522 0.81346 1.90882 1.36644 1.68856 1.51309 1.47406 1.37708 1.24917 1.26205 1.21826 0.98212 0.83544 0.95379 1.22455 0.91835 1.02197 0.91363 1.62078 1.32484 1.23196 1.08256 1.19721 0.95429 0.97463 0.80475 1.21145 1.46981 0.92776 0.93841 0.91752 1.24993 0.95549 0.97544 0.96509 1.69957 1.49306 1.32139 1.02418 0.86491 0.78454 0.84735 0.77712 1.20707 1.21271 1.19712 1.22379 0.99868 0.92176 0.94480 1.21765 0.89764 0.98029 0.90955 0.91088 0.91895 0.90960 0.91251 0.91790 0.91460 0.86735 0.91191 0.91013 0.76828 0.91162 0.89384 0.95754 0.88495 0.99154 0.95078 0.92889 0.95564 0.90147 0.91269 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 8.69 36.00 0.31 -0.63 16 2 C -0.11 -0.81 6.05 -101.06 -0.61 -1.43 16 3 C -0.12 -0.71 10.05 36.01 0.36 -0.35 16 4 C -0.19 -1.58 9.26 -36.03 -0.33 -1.92 16 5 C 0.17 1.80 5.91 -5.19 -0.03 1.77 16 6 N -0.75 -9.14 5.46 -66.41 -0.36 -9.51 16 7 C 0.71 11.39 8.31 -86.92 -0.72 10.66 16 8 O -0.60 -11.66 15.83 5.29 0.08 -11.58 16 9 N -0.63 -9.85 3.00 -177.91 -0.53 -10.39 16 10 C 0.13 2.26 6.61 -3.37 -0.02 2.24 16 11 C 0.05 0.99 5.47 -3.46 -0.02 0.97 16 12 N -0.53 -11.14 4.62 -235.48 -1.09 -12.23 16 13 C 0.19 4.93 4.72 -4.98 -0.02 4.91 16 14 C -0.51 -13.99 8.41 -34.45 -0.29 -14.28 16 15 H 0.06 1.74 7.13 -52.48 -0.37 1.37 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 18 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.04 0.69 5.62 -3.70 -0.02 0.66 16 23 C 0.12 1.61 6.59 -3.60 -0.02 1.59 16 24 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 25 H 0.06 0.39 7.71 -51.93 -0.40 -0.01 16 26 H 0.07 0.61 7.17 -51.93 -0.37 0.24 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.34 7.70 -51.93 -0.40 -0.06 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.11 0.83 8.05 -52.49 -0.42 0.41 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.83 5.75 -51.93 -0.30 0.53 16 33 H 0.40 3.98 5.96 -40.82 -0.24 3.74 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.51 7.09 -51.93 -0.37 1.14 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.10 2.00 6.67 -51.93 -0.35 1.66 16 38 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 39 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 1.29 7.99 -51.93 -0.41 0.87 16 43 H 0.07 0.72 5.63 -51.93 -0.29 0.43 16 44 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -32.15 350.60 -9.71 -41.86 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.29 Total: 0.20 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -1.52 Total: 5.65 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -1.25 Total: -57.80 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.15 -9.71 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601596494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.561 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds