Wall clock time and date at job start Tue Mar 31 2020 05:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50709 * 119.99790 * 2 1 4 4 C 1.52997 * 109.47279 * 124.99969 * 3 2 1 5 5 C 1.52998 * 109.47078 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.46902 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99698 * 179.97438 * 6 5 4 8 8 O 1.21577 * 120.00491 * 354.92447 * 7 6 5 9 9 N 1.34779 * 119.99724 * 174.91875 * 7 6 5 10 10 C 1.47077 * 120.88116 * 184.71934 * 9 7 6 11 11 C 1.53694 * 108.28002 * 128.75922 * 10 9 7 12 12 N 1.46902 * 109.25585 * 54.07963 * 11 10 9 13 13 C 1.46906 * 110.99796 * 172.61479 * 12 11 10 14 14 C 1.50705 * 109.46502 * 294.30051 * 13 12 11 15 15 H 1.07994 * 120.00387 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99140 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00555 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99592 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47215 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47407 * 120.00000 * 18 16 14 21 21 H 1.48498 * 109.46985 * 239.99858 * 18 16 14 22 22 C 1.46894 * 111.26942 * 296.76144 * 12 11 10 23 23 C 1.47079 * 120.88359 * 5.00108 * 9 7 6 24 24 H 1.07999 * 120.00376 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.99473 * 180.02562 * 1 2 3 26 26 H 1.07999 * 120.00376 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46850 * 4.99854 * 3 2 1 28 28 H 1.08997 * 109.46572 * 245.00207 * 3 2 1 29 29 H 1.09001 * 109.47273 * 60.00144 * 4 3 2 30 30 H 1.09005 * 109.47083 * 300.00122 * 4 3 2 31 31 H 1.08992 * 109.47311 * 299.99807 * 5 4 3 32 32 H 1.08996 * 109.47284 * 60.00181 * 5 4 3 33 33 H 0.96995 * 119.99930 * 0.02562 * 6 5 4 34 34 H 1.09002 * 109.63307 * 248.52579 * 10 9 7 35 35 H 1.08998 * 109.62919 * 9.10886 * 10 9 7 36 36 H 1.09002 * 109.64637 * 294.08218 * 11 10 9 37 37 H 1.08993 * 109.42829 * 173.95100 * 11 10 9 38 38 H 1.08994 * 109.47151 * 54.29915 * 13 12 11 39 39 H 1.08999 * 109.46938 * 174.30879 * 13 12 11 40 40 H 0.97005 * 120.00001 * 180.02562 * 17 16 14 41 41 H 1.09007 * 109.49598 * 303.14255 * 22 12 11 42 42 H 1.09005 * 109.49388 * 183.06457 * 22 12 11 43 43 H 1.09000 * 109.62549 * 350.89650 * 23 9 7 44 44 H 1.09003 * 109.62960 * 111.47040 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3333 1.1816 5 6 3.8004 2.6580 1.1812 6 7 4.7302 2.6851 2.3130 7 6 5.5157 3.7617 2.5141 8 8 5.5203 4.6703 1.7064 9 7 6.2959 3.8311 3.6109 10 6 7.0820 5.0394 3.9029 11 6 6.7911 5.4657 5.3506 12 7 7.0406 4.3307 6.2493 13 6 6.9442 4.7422 7.6562 14 6 8.0541 5.7111 7.9733 15 1 8.7607 5.9926 7.2066 16 6 8.1680 6.2372 9.2427 17 7 7.3079 5.8940 10.1765 18 14 9.5434 7.4387 9.6357 19 1 10.3697 7.6595 8.4217 20 1 8.9605 8.7302 10.0800 21 1 10.3936 6.8809 10.7179 22 6 6.1295 3.2145 5.9636 23 6 6.3887 2.6982 4.5443 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5399 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 3.7400 0.5068 1.0920 30 1 2.4772 1.2357 2.1130 31 1 4.3582 2.7551 0.2499 32 1 3.0957 3.4848 1.2705 33 1 4.7810 1.9280 2.9171 34 1 8.1440 4.8219 3.7885 35 1 6.7933 5.8380 3.2196 36 1 5.7503 5.7773 5.4387 37 1 7.4437 6.2952 5.6224 38 1 5.9815 5.2233 7.8288 39 1 7.0327 3.8656 8.2980 40 1 7.3879 6.2645 11.0694 41 1 5.0979 3.5574 6.0432 42 1 6.3024 2.4113 6.6800 43 1 5.6413 1.9483 4.2852 44 1 7.3853 2.2599 4.4903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601598088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:42 Heat of formation + Delta-G solvation = -5.419663 kcal Electronic energy + Delta-G solvation = -21855.084663 eV Core-core repulsion = 18614.901101 eV Total energy + Delta-G solvation = -3240.183562 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.20685 -37.78510 -36.66923 -34.61940 -34.34001 -32.41528 -31.39123 -30.46956 -28.22574 -26.17422 -25.21812 -23.21069 -22.20739 -21.97319 -20.77133 -20.11624 -19.19493 -17.88887 -16.49606 -16.27449 -16.10119 -15.47420 -14.92861 -14.77006 -14.55105 -14.32807 -14.02627 -13.79610 -13.65049 -13.46128 -13.25063 -12.71138 -12.26914 -12.12469 -12.03688 -11.91454 -11.29754 -11.25690 -11.15485 -11.12568 -10.84710 -10.73329 -10.59911 -10.51138 -9.99927 -9.85976 -9.70179 -9.26805 -9.13425 -8.48939 -8.31063 -7.32686 -6.06715 -4.08362 1.89895 2.75164 3.29434 3.32847 3.37118 3.41873 3.92556 4.36839 4.39622 4.58017 4.76712 4.82103 4.93429 5.00311 5.21582 5.27013 5.28381 5.35028 5.37443 5.42859 5.52559 5.58149 5.66486 5.80648 5.83193 5.86304 5.96119 6.04656 6.19458 6.25002 6.38788 6.42271 6.47270 6.56639 6.70226 7.07139 7.21735 7.28018 7.74433 8.00020 8.02915 8.12351 8.47398 8.69834 8.99375 9.56353 11.04152 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036424 B = 0.002733 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.533497 B =10243.162967 C =10702.202253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.092 4.092 4 C -0.127 4.127 5 C 0.138 3.862 6 N -0.752 5.752 7 C 0.707 3.293 8 O -0.597 6.597 9 N -0.626 5.626 10 C 0.133 3.867 11 C 0.051 3.949 12 N -0.535 5.535 13 C 0.193 3.807 14 C -0.508 4.508 15 H 0.065 0.935 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.040 3.960 23 C 0.119 3.881 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.395 0.605 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.097 0.903 38 H -0.009 1.009 39 H 0.031 0.969 40 H 0.261 0.739 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.424 -11.868 -17.129 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.171 4.171 3 C -0.129 4.129 4 C -0.165 4.165 5 C 0.014 3.986 6 N -0.410 5.410 7 C 0.408 3.592 8 O -0.476 6.476 9 N -0.363 5.363 10 C 0.010 3.990 11 C -0.079 4.079 12 N -0.260 5.260 13 C 0.069 3.931 14 C -0.547 4.547 15 H 0.083 0.917 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.089 4.089 23 C -0.005 4.005 24 H 0.115 0.885 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.009 0.991 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.997 -11.307 -17.607 22.777 hybrid contribution -0.195 0.395 0.975 1.070 sum -9.192 -10.912 -16.633 21.914 Atomic orbital electron populations 1.23885 0.96018 1.01916 1.01359 1.22947 0.96034 0.98434 0.99719 1.20669 0.98084 0.95692 0.98491 1.21743 0.98228 0.97203 0.99311 1.21163 0.91193 0.97329 0.88950 1.45272 1.43297 1.19873 1.32597 1.15832 0.78879 0.82608 0.81866 1.90881 1.71242 1.39587 1.45899 1.47417 1.47532 1.17819 1.23506 1.21828 0.94762 0.85882 0.96495 1.22457 0.99575 0.95087 0.90745 1.62079 1.49887 1.06794 1.07255 1.19733 0.96097 0.95998 0.81320 1.21185 1.12482 1.24994 0.96017 0.91684 1.25000 0.96417 0.96961 0.96274 1.69967 1.36304 1.44418 1.03095 0.86434 0.81894 0.80652 0.78400 1.19582 1.21112 1.21029 1.22382 0.94985 0.96464 0.95091 1.21763 1.01628 0.87770 0.89345 0.88534 0.88553 0.87365 0.91083 0.90550 0.91116 0.91110 0.91654 0.91850 0.76867 0.91160 0.89386 0.95745 0.88473 0.99126 0.95066 0.92944 0.95559 0.90132 0.91294 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.21 14.32 29.02 0.42 -0.79 16 2 C -0.15 -0.97 9.52 -36.02 -0.34 -1.31 16 3 C -0.09 -0.58 5.66 -27.88 -0.16 -0.74 16 4 C -0.13 -0.87 5.31 -26.73 -0.14 -1.01 16 5 C 0.14 1.36 5.68 -4.04 -0.02 1.34 16 6 N -0.75 -8.78 5.47 -65.23 -0.36 -9.14 16 7 C 0.71 11.22 8.31 -86.92 -0.72 10.50 16 8 O -0.60 -11.58 15.83 5.30 0.08 -11.49 16 9 N -0.63 -9.75 3.00 -177.92 -0.53 -10.28 16 10 C 0.13 2.24 6.61 -3.37 -0.02 2.22 16 11 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 12 N -0.53 -11.08 4.62 -235.46 -1.09 -12.17 16 13 C 0.19 4.90 4.72 -4.97 -0.02 4.88 16 14 C -0.51 -13.93 8.41 -34.44 -0.29 -14.22 16 15 H 0.07 1.76 7.13 -52.49 -0.37 1.39 16 16 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 18 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.04 0.67 5.62 -3.71 -0.02 0.65 16 23 C 0.12 1.59 6.59 -3.61 -0.02 1.56 16 24 H 0.10 0.57 7.84 -52.49 -0.41 0.16 16 25 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 26 H 0.11 0.60 8.06 -52.49 -0.42 0.18 16 27 H 0.07 0.46 7.79 -51.93 -0.40 0.05 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.39 3.68 5.97 -40.82 -0.24 3.44 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.50 7.09 -51.93 -0.37 1.14 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.10 2.00 6.67 -51.93 -0.35 1.66 16 38 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 39 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 1.27 7.99 -51.93 -0.41 0.86 16 43 H 0.07 0.69 5.63 -51.93 -0.29 0.40 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -32.28 354.65 -9.78 -42.06 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.48 Total: -0.54 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -1.47 Total: 5.48 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -1.24 Total: -57.20 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.28 -9.78 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601598088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.645 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds