Wall clock time and date at job start Tue Mar 31 2020 05:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47223 * 2 1 4 4 H 1.08996 * 115.56145 * 29.31571 * 3 2 1 5 5 C 1.53074 * 117.49532 * 243.59940 * 3 2 1 6 6 C 1.52995 * 59.98605 * 252.51592 * 5 3 2 7 7 H 1.09002 * 117.50002 * 107.50022 * 6 5 3 8 8 N 1.46500 * 117.49901 * 252.49884 * 6 5 3 9 9 C 1.34782 * 119.99872 * 223.74589 * 8 6 5 10 10 O 1.21581 * 120.00172 * 5.09201 * 9 8 6 11 11 N 1.34775 * 119.99901 * 185.08711 * 9 8 6 12 12 C 1.47075 * 120.88110 * 175.00588 * 11 9 8 13 13 C 1.53245 * 108.52224 * 231.20672 * 12 11 9 14 14 N 1.46895 * 109.34048 * 306.17443 * 13 12 11 15 15 C 1.46902 * 110.99997 * 187.25044 * 14 13 12 16 16 C 1.50699 * 109.47219 * 169.99527 * 15 14 13 17 17 H 1.08003 * 120.00285 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00406 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99487 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00439 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47303 * 180.02562 * 20 18 16 22 22 H 1.48507 * 109.47388 * 300.00375 * 20 18 16 23 23 H 1.48499 * 109.46983 * 60.00332 * 20 18 16 24 24 C 1.46899 * 111.27142 * 63.09963 * 14 13 12 25 25 C 1.47079 * 120.88198 * 355.03168 * 11 9 8 26 26 H 1.09010 * 109.46967 * 300.00101 * 1 2 3 27 27 H 1.08997 * 109.47332 * 59.99494 * 1 2 3 28 28 H 1.09000 * 109.47360 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47038 * 240.00068 * 2 1 3 30 30 H 1.09005 * 109.47194 * 120.00227 * 2 1 3 31 31 H 1.08997 * 117.51248 * 145.03426 * 5 3 2 32 32 H 1.09004 * 117.51193 * 359.97438 * 5 3 2 33 33 H 0.96998 * 119.99786 * 43.74566 * 8 6 5 34 34 H 1.09001 * 109.62648 * 111.50224 * 12 11 9 35 35 H 1.08997 * 109.79099 * 351.01166 * 12 11 9 36 36 H 1.08998 * 109.49273 * 186.21010 * 13 12 11 37 37 H 1.09003 * 109.51079 * 66.14608 * 13 12 11 38 38 H 1.09003 * 109.46735 * 49.99871 * 15 14 13 39 39 H 1.08998 * 109.47042 * 289.99922 * 15 14 13 40 40 H 0.97002 * 120.00007 * 359.97438 * 19 18 16 41 41 H 1.08997 * 109.49152 * 56.85743 * 24 14 13 42 42 H 1.09006 * 109.49058 * 176.93307 * 24 14 13 43 43 H 1.08998 * 109.62792 * 248.50018 * 25 11 9 44 44 H 1.09008 * 109.63030 * 9.08009 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3885 2.1717 0.4814 5 6 2.8448 1.9075 -1.2162 6 6 3.5502 1.6579 0.1183 7 1 4.1803 0.7719 0.1965 8 7 4.0097 2.8284 0.8699 9 6 5.2320 2.8272 1.4379 10 8 5.9889 1.8946 1.2497 11 7 5.6152 3.8600 2.2143 12 6 6.8992 3.8298 2.9311 13 6 6.6421 4.1630 4.4046 14 7 5.9096 5.4331 4.4956 15 6 5.7933 5.8749 5.8917 16 6 5.2611 7.2843 5.9299 17 1 5.0316 7.8001 5.0092 18 6 5.0659 7.9150 7.1404 19 7 5.3449 7.2867 8.2616 20 14 4.4055 9.6616 7.1878 21 1 4.2881 10.1083 8.5991 22 1 5.3350 10.5623 6.4597 23 1 3.0689 9.7030 6.5422 24 6 4.5874 5.3321 3.8635 25 6 4.7603 5.0469 2.3679 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.7226 2.9426 -1.5350 32 1 3.0111 1.1857 -2.0159 33 1 3.4343 3.6042 0.9587 34 1 7.5758 4.5685 2.5014 35 1 7.3427 2.8373 2.8521 36 1 7.5937 4.2536 4.9284 37 1 6.0506 3.3686 4.8596 38 1 6.7746 5.8442 6.3654 39 1 5.1110 5.2141 6.4263 40 1 5.6875 6.3795 8.2370 41 1 4.0243 4.5214 4.3257 42 1 4.0488 6.2707 3.9950 43 1 5.2314 5.9025 1.8840 44 1 3.7864 4.8577 1.9162 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601607469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:55 Heat of formation + Delta-G solvation = -0.529326 kcal Electronic energy + Delta-G solvation = -22264.606057 eV Core-core repulsion = 19024.634556 eV Total energy + Delta-G solvation = -3239.971501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.38269 -38.47118 -37.37107 -34.58746 -33.83226 -32.58464 -31.55791 -30.57697 -27.96433 -25.20479 -24.15509 -23.46809 -22.75347 -21.85083 -20.95375 -20.73746 -19.33256 -17.99982 -16.83087 -16.68032 -15.46332 -15.28884 -14.89256 -14.71639 -14.59175 -14.27827 -13.98434 -13.80249 -13.68427 -13.31714 -12.92704 -12.81275 -12.39670 -12.27978 -11.81865 -11.57894 -11.40881 -11.37223 -11.34354 -11.22854 -11.01939 -10.76820 -10.62124 -10.44904 -10.28677 -10.11482 -9.98800 -8.95518 -8.77303 -8.43845 -8.35064 -7.45228 -6.42718 -4.12645 2.57459 3.09539 3.40038 3.42731 3.61129 3.69689 3.78059 4.40985 4.46155 4.54656 4.64675 4.71801 4.87432 5.04432 5.14589 5.16788 5.29028 5.33275 5.35104 5.40612 5.51574 5.55651 5.61101 5.68669 5.70572 5.77070 5.79706 5.83514 5.98788 6.03820 6.17756 6.33665 6.35026 6.43503 6.56870 6.91055 6.97878 7.00352 7.67357 7.83762 7.94652 8.22612 8.49383 8.59953 8.79829 9.58510 10.96314 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021278 B = 0.003376 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.589624 B = 8290.843326 C = 8993.169033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.162 4.162 4 H 0.106 0.894 5 C -0.192 4.192 6 C 0.107 3.893 7 H 0.136 0.864 8 N -0.721 5.721 9 C 0.712 3.288 10 O -0.596 6.596 11 N -0.625 5.625 12 C 0.137 3.863 13 C 0.038 3.962 14 N -0.528 5.528 15 C 0.183 3.817 16 C -0.591 4.591 17 H 0.058 0.942 18 C 0.014 3.986 19 N -0.912 5.912 20 Si 1.072 2.928 21 H -0.283 1.283 22 H -0.287 1.287 23 H -0.288 1.288 24 C 0.052 3.948 25 C 0.115 3.885 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.397 0.603 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.026 0.974 38 H 0.022 0.978 39 H -0.020 1.020 40 H 0.267 0.733 41 H 0.024 0.976 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.011 -10.450 -17.056 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.182 4.182 4 H 0.124 0.876 5 C -0.231 4.231 6 C 0.000 4.000 7 H 0.154 0.846 8 N -0.376 5.376 9 C 0.414 3.586 10 O -0.475 6.475 11 N -0.362 5.362 12 C 0.014 3.986 13 C -0.091 4.091 14 N -0.253 5.253 15 C 0.058 3.942 16 C -0.629 4.629 17 H 0.076 0.924 18 C -0.189 4.189 19 N -0.549 5.549 20 Si 0.900 3.100 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.215 1.215 24 C -0.078 4.078 25 C -0.008 4.008 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.234 0.766 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.044 0.956 38 H 0.040 0.960 39 H -0.002 1.002 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.584 -9.535 -16.370 20.056 hybrid contribution -0.399 -1.347 -0.509 1.494 sum -6.983 -10.882 -16.879 21.263 Atomic orbital electron populations 1.21745 0.95346 1.01623 1.01945 1.21104 0.96033 0.93655 1.02256 1.22955 0.94080 0.98747 1.02376 0.87598 1.23654 1.04341 1.02721 0.92356 1.21502 0.93397 0.90662 0.94400 0.84613 1.44660 1.16873 1.18844 1.57212 1.15741 0.81645 0.82622 0.78639 1.90872 1.53248 1.36799 1.66554 1.47384 1.22043 1.17664 1.49065 1.21612 0.83580 1.02478 0.90901 1.22475 0.99588 0.91798 0.95260 1.61976 1.16618 1.25958 1.20774 1.19830 0.95862 0.96101 0.82398 1.21943 1.47097 0.98793 0.95108 0.92420 1.25867 0.95558 1.05518 0.91995 1.70801 1.41532 1.14106 1.28428 0.83487 0.76125 0.74371 0.75972 1.20826 1.21323 1.21469 1.22319 0.91923 1.01724 0.91796 1.21866 0.93255 0.87592 0.98082 0.92623 0.92635 0.92675 0.91624 0.91406 0.88647 0.88068 0.76613 0.91067 0.89237 0.90033 0.95571 0.95975 1.00201 0.92287 0.95797 0.88373 0.90465 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.87 37.16 0.37 -0.62 16 2 C -0.09 -0.69 6.22 -26.73 -0.17 -0.86 16 3 C -0.16 -1.35 5.66 -90.58 -0.51 -1.87 16 4 H 0.11 0.87 8.07 -51.93 -0.42 0.45 16 5 C -0.19 -1.59 10.11 -26.70 -0.27 -1.86 16 6 C 0.11 1.15 6.13 -67.93 -0.42 0.74 16 7 H 0.14 1.66 7.43 -51.93 -0.39 1.28 16 8 N -0.72 -8.83 5.48 -58.68 -0.32 -9.15 16 9 C 0.71 11.27 8.31 -86.91 -0.72 10.54 16 10 O -0.60 -11.28 15.42 5.29 0.08 -11.19 16 11 N -0.62 -9.69 3.01 -178.19 -0.54 -10.23 16 12 C 0.14 2.19 6.58 -3.60 -0.02 2.17 16 13 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 14 N -0.53 -11.01 4.62 -235.76 -1.09 -12.09 16 15 C 0.18 4.63 4.04 -4.98 -0.02 4.61 16 16 C -0.59 -16.19 8.41 -34.44 -0.29 -16.48 16 17 H 0.06 1.56 7.13 -52.48 -0.37 1.18 16 18 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 19 N -0.91 -27.39 13.65 55.43 0.76 -26.63 16 20 Si 1.07 24.61 29.90 -169.99 -5.08 19.52 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 24 C 0.05 0.94 5.46 -3.70 -0.02 0.92 16 25 C 0.12 1.64 6.59 -3.60 -0.02 1.62 16 26 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.45 7.88 -51.93 -0.41 0.04 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 0.74 8.03 -51.93 -0.42 0.32 16 33 H 0.40 4.06 6.32 -40.82 -0.26 3.80 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.42 7.11 -51.93 -0.37 1.05 16 36 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.02 0.59 7.84 -51.93 -0.41 0.19 16 39 H -0.02 -0.53 7.99 -51.93 -0.41 -0.94 16 40 H 0.27 8.00 7.22 -40.82 -0.29 7.71 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 1.90 6.67 -51.93 -0.35 1.55 16 43 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.07 0.77 5.64 -51.92 -0.29 0.48 16 LS Contribution 350.44 15.07 5.28 5.28 Total: -1.00 -32.19 350.44 -10.53 -42.73 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.40 Total: 1.87 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.22 Total: -0.11 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -1.19 Total: -58.10 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.52 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.19 -10.53 -42.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601607469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.196 kcal (2) G-P(sol) polarization free energy of solvation -32.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds