Wall clock time and date at job start Tue Mar 31 2020 05:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00114 * 2 1 4 4 C 1.52998 * 109.47078 * 95.00771 * 3 2 1 5 5 C 1.50700 * 119.99899 * 180.02562 * 2 1 3 6 6 N 1.46500 * 109.47311 * 94.99651 * 5 2 1 7 7 C 1.34775 * 120.00202 * 180.02562 * 6 5 2 8 8 O 1.21585 * 119.99756 * 354.91610 * 7 6 5 9 9 N 1.34784 * 120.00114 * 174.91571 * 7 6 5 10 10 C 1.47081 * 120.88093 * 184.71462 * 9 7 6 11 11 C 1.53689 * 108.27385 * 128.75487 * 10 9 7 12 12 N 1.46901 * 109.25733 * 54.08316 * 11 10 9 13 13 C 1.46907 * 110.99978 * 172.60269 * 12 11 10 14 14 C 1.50695 * 109.47431 * 294.30486 * 13 12 11 15 15 H 1.08001 * 119.99920 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99970 * 179.97438 * 14 13 12 17 17 N 1.31506 * 120.00017 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99785 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47126 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46762 * 119.99936 * 18 16 14 21 21 H 1.48499 * 109.46779 * 239.99888 * 18 16 14 22 22 C 1.46901 * 111.26801 * 296.75470 * 12 11 10 23 23 C 1.47075 * 120.88025 * 4.99610 * 9 7 6 24 24 H 1.07997 * 119.99523 * 359.97438 * 1 2 3 25 25 H 1.07992 * 120.00384 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47285 * 215.00239 * 3 2 1 27 27 H 1.08997 * 109.47233 * 335.00633 * 3 2 1 28 28 H 1.09008 * 109.47020 * 300.00146 * 4 3 2 29 29 H 1.09003 * 109.47563 * 59.99622 * 4 3 2 30 30 H 1.09001 * 109.47266 * 179.97438 * 4 3 2 31 31 H 1.09001 * 109.47104 * 214.99645 * 5 2 1 32 32 H 1.08999 * 109.47179 * 334.99598 * 5 2 1 33 33 H 0.97006 * 120.00256 * 359.97438 * 6 5 2 34 34 H 1.08998 * 109.62579 * 248.52856 * 10 9 7 35 35 H 1.09006 * 109.62742 * 9.10458 * 10 9 7 36 36 H 1.09000 * 109.65165 * 294.08001 * 11 10 9 37 37 H 1.09003 * 109.42462 * 173.94906 * 11 10 9 38 38 H 1.08998 * 109.46750 * 54.30797 * 13 12 11 39 39 H 1.09003 * 109.46747 * 174.29983 * 13 12 11 40 40 H 0.96998 * 120.00271 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.48989 * 303.14159 * 22 12 11 42 42 H 1.08998 * 109.48935 * 183.06491 * 22 12 11 43 43 H 1.09005 * 109.62937 * 350.89531 * 23 9 7 44 44 H 1.08999 * 109.63355 * 111.47402 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.4276 1.6838 1.4370 5 6 2.0635 -1.3051 -0.0006 6 7 2.4118 -1.6673 -1.3767 7 6 3.0925 -2.8043 -1.6226 8 8 3.4978 -3.4821 -0.6982 9 7 3.3238 -3.1899 -2.8932 10 6 3.9733 -4.4768 -3.1852 11 6 3.1090 -5.2318 -4.2075 12 7 2.8802 -4.3727 -5.3769 13 6 2.2080 -5.1148 -6.4519 14 6 3.1241 -6.1955 -6.9654 15 1 4.1073 -6.3190 -6.5359 16 6 2.7068 -7.0272 -7.9828 17 7 1.5090 -6.8777 -8.5047 18 14 3.8428 -8.3663 -8.6198 19 1 5.1245 -8.3258 -7.8709 20 1 3.2008 -9.6918 -8.4298 21 1 4.1060 -8.1462 -10.0646 22 6 2.1207 -3.1690 -5.0134 23 6 2.9390 -2.3322 -4.0243 24 1 -0.5399 0.9353 0.0004 25 1 -0.5400 -0.9352 0.0004 26 1 2.9742 1.1989 -0.5895 27 1 1.4386 2.0855 -0.4342 28 1 1.5169 1.7900 2.0266 29 1 3.0525 0.9034 1.8713 30 1 2.9730 2.6275 1.4370 31 1 2.9742 -1.1991 0.5889 32 1 1.4386 -2.0856 0.4334 33 1 2.1520 -1.0892 -2.1110 34 1 4.9659 -4.3003 -3.5995 35 1 4.0546 -5.0621 -2.2692 36 1 2.1522 -5.4940 -3.7560 37 1 3.6257 -6.1398 -4.5187 38 1 1.2944 -5.5664 -6.0652 39 1 1.9600 -4.4321 -7.2646 40 1 1.2155 -7.4626 -9.2207 41 1 1.1777 -3.4599 -4.5507 42 1 1.9207 -2.5809 -5.9090 43 1 2.3361 -1.4988 -3.6634 44 1 3.8340 -1.9535 -4.5179 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601608122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:44 Heat of formation + Delta-G solvation = -3.831641 kcal Electronic energy + Delta-G solvation = -22239.695450 eV Core-core repulsion = 18999.580750 eV Total energy + Delta-G solvation = -3240.114700 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22950 -37.92026 -36.96855 -34.41993 -33.84979 -32.36999 -30.93331 -30.46294 -28.33028 -26.38004 -25.22441 -23.88950 -23.12749 -22.13616 -20.71670 -19.60554 -18.78209 -17.69639 -16.45330 -16.14383 -15.76812 -15.38503 -14.97985 -14.74010 -14.50083 -14.29164 -13.95283 -13.78842 -13.54773 -13.39187 -13.24232 -12.88491 -12.47886 -12.21218 -12.07155 -11.97660 -11.29744 -11.23901 -11.16049 -11.05354 -10.84474 -10.73357 -10.60132 -10.50970 -10.07252 -9.86584 -9.53317 -9.26540 -9.13453 -8.48881 -8.30788 -7.32391 -6.06596 -4.08235 1.68402 2.90744 3.29528 3.32673 3.37179 3.41974 4.01195 4.38111 4.40120 4.46345 4.78519 4.88948 5.03811 5.21816 5.23079 5.28604 5.31717 5.36159 5.41846 5.51677 5.55171 5.60618 5.66534 5.67427 5.84003 5.87868 5.94843 6.04950 6.19945 6.22150 6.40911 6.43386 6.49594 6.56813 6.70609 7.07758 7.21941 7.28269 7.74572 8.00306 8.03271 8.12592 8.47627 8.69705 8.99518 9.56509 11.04341 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038432 B = 0.003052 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.391793 B = 9172.335054 C = 9524.712593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.144 4.144 3 C -0.089 4.089 4 C -0.147 4.147 5 C 0.175 3.825 6 N -0.747 5.747 7 C 0.707 3.293 8 O -0.597 6.597 9 N -0.625 5.625 10 C 0.133 3.867 11 C 0.051 3.949 12 N -0.535 5.535 13 C 0.194 3.806 14 C -0.508 4.508 15 H 0.065 0.935 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.041 3.959 23 C 0.119 3.881 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.396 0.604 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.097 0.903 38 H -0.009 1.009 39 H 0.031 0.969 40 H 0.261 0.739 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 16.330 15.186 22.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.127 4.127 4 C -0.204 4.204 5 C 0.051 3.949 6 N -0.405 5.405 7 C 0.408 3.592 8 O -0.476 6.476 9 N -0.362 5.362 10 C 0.010 3.990 11 C -0.078 4.078 12 N -0.260 5.260 13 C 0.069 3.931 14 C -0.547 4.547 15 H 0.083 0.917 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.089 4.089 23 C -0.005 4.005 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.232 0.768 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.042 0.958 37 H 0.115 0.885 38 H 0.009 0.991 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.118 15.883 15.560 22.235 hybrid contribution -0.595 -0.681 -0.637 1.106 sum -0.713 15.201 14.923 21.314 Atomic orbital electron populations 1.23906 0.95154 1.02362 0.98644 1.21839 0.95420 0.95314 1.01898 1.20610 1.00168 0.93986 0.97923 1.21733 1.01568 1.01324 0.95823 1.20065 0.98961 0.92918 0.82922 1.45282 1.61638 1.24624 1.08954 1.15838 0.78896 0.81212 0.83214 1.90885 1.57468 1.56256 1.43010 1.47410 1.63565 1.21664 1.03565 1.21833 0.95804 0.82452 0.98870 1.22455 0.98225 0.96880 0.90289 1.62080 1.48608 1.06790 1.08536 1.19729 0.92791 0.92730 0.87874 1.21183 1.01273 1.14079 1.18141 0.91694 1.24995 0.95250 0.97816 0.96559 1.69962 1.18162 1.39142 1.26534 0.86438 0.80861 0.81416 0.78697 1.19581 1.21114 1.21010 1.22378 0.94458 0.94258 0.97808 1.21761 0.99434 0.92269 0.87032 0.87979 0.88038 0.91093 0.91219 0.92622 0.92406 0.92477 0.91161 0.91388 0.76788 0.91151 0.89379 0.95753 0.88480 0.99140 0.95079 0.92941 0.95562 0.90139 0.91303 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 13.88 29.01 0.40 -0.78 16 2 C -0.14 -1.15 4.67 -101.07 -0.47 -1.63 16 3 C -0.09 -0.61 6.10 -27.88 -0.17 -0.78 16 4 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 5 C 0.18 1.86 5.84 -5.19 -0.03 1.83 16 6 N -0.75 -8.97 5.46 -66.41 -0.36 -9.33 16 7 C 0.71 11.26 8.31 -86.91 -0.72 10.54 16 8 O -0.60 -11.57 15.83 5.29 0.08 -11.49 16 9 N -0.62 -9.77 3.00 -177.91 -0.53 -10.30 16 10 C 0.13 2.25 6.61 -3.37 -0.02 2.23 16 11 C 0.05 0.98 5.47 -3.47 -0.02 0.97 16 12 N -0.53 -11.10 4.62 -235.47 -1.09 -12.19 16 13 C 0.19 4.91 4.72 -4.97 -0.02 4.89 16 14 C -0.51 -13.94 8.41 -34.44 -0.29 -14.23 16 15 H 0.06 1.76 7.13 -52.49 -0.37 1.39 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 18 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 23 C 0.12 1.60 6.59 -3.61 -0.02 1.58 16 24 H 0.10 0.60 7.99 -52.49 -0.42 0.19 16 25 H 0.10 0.77 7.99 -52.49 -0.42 0.35 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.41 7.99 -51.93 -0.41 0.00 16 28 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.78 7.99 -51.93 -0.41 0.37 16 33 H 0.40 3.96 5.96 -40.82 -0.24 3.72 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.50 7.09 -51.93 -0.37 1.14 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 2.00 6.67 -51.93 -0.35 1.66 16 38 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 39 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 1.28 7.99 -51.93 -0.41 0.87 16 43 H 0.07 0.71 5.63 -51.93 -0.29 0.42 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 354.75 15.07 5.35 5.35 Total: -1.00 -31.87 354.75 -9.44 -41.31 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.48 Total: -0.21 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -1.12 Total: 6.15 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -1.25 Total: -57.47 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.87 -9.44 -41.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601608122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.482 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds