Wall clock time and date at job start Tue Mar 31 2020 05:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99940 * 2 1 4 4 C 1.50697 * 119.99862 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.47148 * 94.99638 * 4 2 1 6 6 N 1.46503 * 109.46836 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99662 * 180.02562 * 6 5 4 8 8 O 1.21581 * 120.00089 * 354.92306 * 7 6 5 9 9 N 1.34774 * 119.99633 * 175.19700 * 7 6 5 10 10 C 1.47081 * 120.87815 * 184.43638 * 9 7 6 11 11 C 1.53694 * 108.27814 * 128.75300 * 10 9 7 12 12 N 1.46897 * 109.25719 * 54.08280 * 11 10 9 13 13 C 1.46894 * 111.00511 * 172.60739 * 12 11 10 14 14 C 1.50702 * 109.47090 * 294.30409 * 13 12 11 15 15 H 1.07997 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00192 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99689 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00154 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46784 * 60.00104 * 18 16 14 20 20 H 1.48498 * 109.46818 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47205 * 300.00037 * 18 16 14 22 22 C 1.46904 * 111.26796 * 296.75582 * 12 11 10 23 23 C 1.47078 * 120.88580 * 4.71390 * 9 7 6 24 24 H 1.08007 * 119.99791 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.00203 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47173 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47479 * 300.00374 * 3 2 1 28 28 H 1.08997 * 109.47172 * 60.00669 * 3 2 1 29 29 H 1.09002 * 109.46953 * 334.99452 * 4 2 1 30 30 H 1.08999 * 109.46952 * 214.99918 * 4 2 1 31 31 H 1.08996 * 109.46823 * 60.00463 * 5 4 2 32 32 H 1.08997 * 109.46919 * 300.00081 * 5 4 2 33 33 H 0.96993 * 120.00327 * 0.02562 * 6 5 4 34 34 H 1.09002 * 109.63018 * 248.51866 * 10 9 7 35 35 H 1.09001 * 109.63196 * 9.10190 * 10 9 7 36 36 H 1.08993 * 109.65015 * 294.08090 * 11 10 9 37 37 H 1.09000 * 109.42046 * 173.94552 * 11 10 9 38 38 H 1.09002 * 109.47044 * 54.30158 * 13 12 11 39 39 H 1.08998 * 109.47782 * 174.29998 * 13 12 11 40 40 H 0.96999 * 119.99180 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.49477 * 303.14367 * 22 12 11 42 42 H 1.08997 * 109.49313 * 183.05854 * 22 12 11 43 43 H 1.09003 * 109.62597 * 350.89567 * 23 9 7 44 44 H 1.08993 * 109.63151 * 111.47962 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 6 2.4273 -1.6833 -1.4378 6 7 3.1603 -2.9518 -1.4382 7 6 3.5858 -3.4837 -2.6012 8 8 3.2826 -2.9606 -3.6560 9 7 4.3428 -4.5988 -2.5951 10 6 4.8982 -5.1410 -3.8444 11 6 6.4059 -5.3630 -3.6453 12 7 6.6197 -6.1994 -2.4568 13 6 8.0323 -6.5816 -2.3290 14 6 8.4168 -7.4757 -3.4796 15 1 7.6849 -7.7344 -4.2304 16 6 9.7031 -7.9633 -3.5738 17 7 10.5945 -7.6477 -2.6597 18 14 10.1795 -9.0721 -4.9996 19 1 9.9760 -8.3474 -6.2796 20 1 11.6079 -9.4574 -4.8711 21 1 9.3336 -10.2925 -4.9817 22 6 6.1439 -5.5278 -1.2400 23 6 4.6305 -5.3092 -1.3397 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9352 0.0004 26 1 3.1352 1.1059 0.0005 27 1 1.8002 1.8767 -0.8899 28 1 1.8003 1.8766 0.8900 29 1 1.4385 -2.0856 0.4335 30 1 2.9742 -1.1991 0.5889 31 1 3.0523 -0.9029 -1.8717 32 1 1.5166 -1.7893 -2.0272 33 1 3.3394 -3.4088 -0.6016 34 1 4.4135 -6.0885 -4.0798 35 1 4.7353 -4.4316 -4.6558 36 1 6.9029 -4.4026 -3.5083 37 1 6.8173 -5.8641 -4.5215 38 1 8.6535 -5.6860 -2.3414 39 1 8.1812 -7.1140 -1.3896 40 1 11.4995 -7.9905 -2.7262 41 1 6.6445 -4.5651 -1.1364 42 1 6.3652 -6.1485 -0.3717 43 1 4.2904 -4.7109 -0.4944 44 1 4.1205 -6.2724 -1.3390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601613225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:46 Heat of formation + Delta-G solvation = -4.549692 kcal Electronic energy + Delta-G solvation = -22034.637400 eV Core-core repulsion = 18794.491563 eV Total energy + Delta-G solvation = -3240.145837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.21821 -37.85458 -36.96745 -34.53001 -34.26938 -32.38581 -30.82841 -29.58736 -27.97088 -27.54707 -25.48167 -23.78494 -22.89374 -22.09186 -20.73928 -19.53743 -18.52725 -17.83479 -16.47195 -16.17946 -15.91050 -15.17242 -14.91700 -14.77838 -14.54935 -14.35277 -13.90962 -13.84946 -13.61940 -13.48365 -13.42985 -12.75266 -12.33727 -12.11899 -12.06685 -11.96777 -11.53310 -11.35362 -11.28016 -11.13731 -10.83532 -10.75560 -10.60690 -10.51225 -9.99077 -9.85023 -9.38756 -9.29295 -9.14058 -8.48088 -8.31393 -7.32877 -6.06364 -4.08184 1.83408 2.76332 3.32236 3.32574 3.36378 3.39333 3.91230 4.39011 4.49983 4.56052 4.74107 4.80606 4.96555 5.20907 5.22605 5.26746 5.28457 5.34236 5.37180 5.43608 5.57318 5.62750 5.64597 5.69596 5.77277 5.84239 5.95362 6.04485 6.19191 6.25244 6.42056 6.46263 6.50160 6.56520 6.69774 7.06523 7.21608 7.27940 7.73931 7.99882 8.02590 8.12432 8.47444 8.69414 8.98885 9.56380 11.04444 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040225 B = 0.002839 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.917240 B = 9860.354563 C =10125.921181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.121 4.121 3 C -0.122 4.122 4 C -0.098 4.098 5 C 0.145 3.855 6 N -0.752 5.752 7 C 0.707 3.293 8 O -0.596 6.596 9 N -0.625 5.625 10 C 0.133 3.867 11 C 0.051 3.949 12 N -0.535 5.535 13 C 0.194 3.806 14 C -0.510 4.510 15 H 0.064 0.936 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.040 3.960 23 C 0.119 3.881 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.395 0.605 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.097 0.903 38 H -0.009 1.009 39 H 0.031 0.969 40 H 0.262 0.738 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.950 12.569 7.676 22.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.122 4.122 3 C -0.179 4.179 4 C -0.136 4.136 5 C 0.021 3.979 6 N -0.411 5.411 7 C 0.409 3.591 8 O -0.475 6.475 9 N -0.363 5.363 10 C 0.010 3.990 11 C -0.078 4.078 12 N -0.260 5.260 13 C 0.069 3.931 14 C -0.548 4.548 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.727 3.273 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.089 4.089 23 C -0.005 4.005 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.231 0.769 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.009 0.991 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.044 0.956 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.225 12.507 6.883 22.372 hybrid contribution 1.008 -0.133 -0.037 1.018 sum -16.217 12.374 6.846 21.517 Atomic orbital electron populations 1.23713 0.95245 1.02047 1.01963 1.21562 0.95300 0.95255 1.00047 1.20882 1.00282 0.94586 1.02131 1.20917 1.00739 0.95288 0.96647 1.21075 0.96337 0.84650 0.95834 1.45283 1.62102 1.25635 1.08083 1.15821 0.78924 0.80447 0.83958 1.90886 1.62453 1.64065 1.30125 1.47415 1.53081 1.26324 1.09432 1.21834 0.93623 0.98594 0.84929 1.22454 0.93524 0.95533 0.96337 1.62077 1.24118 1.39538 1.00296 1.19717 0.80266 0.94924 0.98149 1.21108 0.95522 1.29231 1.08979 0.91808 1.24996 0.96440 0.96659 0.96489 1.69952 1.04058 1.45324 1.34471 0.86541 0.77275 0.81007 0.82481 1.20219 1.21385 1.20119 1.22384 0.93428 0.97539 0.95574 1.21765 0.97027 0.96749 0.84973 0.88336 0.88347 0.91766 0.91381 0.91524 0.90640 0.90465 0.91717 0.91600 0.76877 0.91146 0.89378 0.95744 0.88480 0.99143 0.95083 0.92830 0.95553 0.90127 0.91298 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 13.93 29.01 0.40 -0.94 16 2 C -0.12 -0.89 5.31 -101.07 -0.54 -1.43 16 3 C -0.12 -0.80 10.05 36.00 0.36 -0.43 16 4 C -0.10 -0.73 5.41 -27.88 -0.15 -0.88 16 5 C 0.15 1.51 5.66 -4.04 -0.02 1.48 16 6 N -0.75 -8.85 5.47 -65.23 -0.36 -9.21 16 7 C 0.71 11.26 8.31 -86.92 -0.72 10.54 16 8 O -0.60 -11.63 15.83 5.29 0.08 -11.55 16 9 N -0.63 -9.74 3.00 -177.91 -0.53 -10.27 16 10 C 0.13 2.24 6.61 -3.36 -0.02 2.22 16 11 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 12 N -0.54 -11.08 4.62 -235.47 -1.09 -12.16 16 13 C 0.19 4.92 4.72 -4.98 -0.02 4.90 16 14 C -0.51 -13.98 8.41 -34.44 -0.29 -14.27 16 15 H 0.06 1.72 7.13 -52.49 -0.37 1.35 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 18 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 23 C 0.12 1.58 6.59 -3.60 -0.02 1.56 16 24 H 0.10 0.59 8.05 -52.48 -0.42 0.17 16 25 H 0.10 0.65 7.99 -52.49 -0.42 0.23 16 26 H 0.06 0.42 8.00 -51.92 -0.42 0.00 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.50 7.99 -51.93 -0.41 0.09 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.39 3.67 5.97 -40.82 -0.24 3.42 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.51 7.09 -51.93 -0.37 1.14 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.10 2.00 6.67 -51.93 -0.35 1.66 16 38 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 39 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 1.27 7.99 -51.93 -0.41 0.86 16 43 H 0.07 0.68 5.64 -51.93 -0.29 0.39 16 44 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 354.80 15.07 5.35 5.35 Total: -1.00 -32.22 354.80 -9.48 -41.70 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.49 Total: -0.42 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.16 Total: 5.83 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -1.24 Total: -57.26 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.22 -9.48 -41.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601613225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.153 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds