Wall clock time and date at job start Tue Mar 31 2020 05:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47229 * 2 1 4 4 C 1.31003 * 119.99794 * 124.61957 * 3 2 1 5 5 C 1.50703 * 120.00328 * 7.70405 * 4 3 2 6 6 N 1.46503 * 109.46879 * 128.38584 * 5 4 3 7 7 C 1.34774 * 119.99335 * 180.02562 * 6 5 4 8 8 O 1.21584 * 120.00764 * 356.13211 * 7 6 5 9 9 N 1.34783 * 119.99503 * 175.85870 * 7 6 5 10 10 C 1.47076 * 120.88216 * 184.95640 * 9 7 6 11 11 C 1.53687 * 108.27904 * 128.75408 * 10 9 7 12 12 N 1.46903 * 109.25549 * 54.08236 * 11 10 9 13 13 C 1.46898 * 110.99857 * 172.60830 * 12 11 10 14 14 C 1.50705 * 109.47461 * 294.30020 * 13 12 11 15 15 H 1.08001 * 119.99758 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00287 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99772 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46809 * 90.00323 * 18 16 14 20 20 H 1.48497 * 109.47354 * 210.00074 * 18 16 14 21 21 H 1.48492 * 109.47206 * 330.00818 * 18 16 14 22 22 C 1.46891 * 111.27003 * 296.75926 * 12 11 10 23 23 C 1.47083 * 120.87911 * 5.23692 * 9 7 6 24 24 H 1.09000 * 109.47257 * 299.99682 * 1 2 3 25 25 H 1.08995 * 109.46912 * 60.00112 * 1 2 3 26 26 H 1.09009 * 109.46983 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47063 * 239.99879 * 2 1 3 28 28 H 1.09009 * 109.46845 * 120.00029 * 2 1 3 29 29 H 1.07996 * 119.99895 * 304.62306 * 3 2 1 30 30 H 1.08001 * 119.99601 * 187.70872 * 4 3 2 31 31 H 1.08994 * 109.46786 * 8.38694 * 5 4 3 32 32 H 1.08999 * 109.47071 * 248.38778 * 5 4 3 33 33 H 0.97002 * 119.99965 * 359.97438 * 6 5 4 34 34 H 1.09004 * 109.62734 * 248.52870 * 10 9 7 35 35 H 1.09004 * 109.62869 * 9.10059 * 10 9 7 36 36 H 1.09005 * 109.64955 * 294.08065 * 11 10 9 37 37 H 1.08999 * 109.42605 * 173.94993 * 11 10 9 38 38 H 1.08994 * 109.47499 * 54.30269 * 13 12 11 39 39 H 1.09008 * 109.47236 * 174.30358 * 13 12 11 40 40 H 0.97005 * 119.99676 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.49186 * 303.14071 * 22 12 11 42 42 H 1.09004 * 109.49341 * 183.06333 * 22 12 11 43 43 H 1.08994 * 109.63336 * 350.89467 * 23 9 7 44 44 H 1.09001 * 109.62874 * 111.47740 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8584 1.8234 0.9337 5 6 3.4422 0.8286 1.9035 6 7 4.8995 0.9755 1.9356 7 6 5.6390 0.1841 2.7376 8 8 5.0928 -0.6031 3.4862 9 7 6.9842 0.2614 2.7060 10 6 7.8124 -0.6660 3.4916 11 6 8.8595 -1.2889 2.5549 12 7 9.6009 -0.2174 1.8764 13 6 10.7265 -0.7626 1.1057 14 6 11.7358 -1.3655 2.0486 15 1 11.5586 -1.3461 3.1138 16 6 12.8848 -1.9429 1.5513 17 7 13.1003 -1.9670 0.2542 18 14 14.1362 -2.6895 2.7202 19 1 13.8111 -4.1211 2.9447 20 1 15.4940 -2.5771 2.1295 21 1 14.0980 -1.9643 4.0154 22 6 8.7158 0.5836 1.0205 23 6 7.6628 1.2794 1.8896 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.7113 2.1070 -0.7696 30 1 3.1208 2.8684 1.0084 31 1 3.1859 -0.1820 1.5857 32 1 3.0367 1.0104 2.8987 33 1 5.3322 1.6419 1.3791 34 1 8.3114 -0.1217 4.2935 35 1 7.1840 -1.4503 3.9137 36 1 8.3621 -1.9134 1.8127 37 1 9.5512 -1.8971 3.1378 38 1 10.3618 -1.5309 0.4241 39 1 11.1964 0.0374 0.5336 40 1 13.9086 -2.3736 -0.0956 41 1 8.2204 -0.0669 0.2997 42 1 9.3033 1.3335 0.4906 43 1 6.9356 1.7819 1.2518 44 1 8.1478 2.0070 2.5403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601614013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:48 Heat of formation + Delta-G solvation = 0.974023 kcal Electronic energy + Delta-G solvation = -22052.535015 eV Core-core repulsion = 18812.628704 eV Total energy + Delta-G solvation = -3239.906311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.21227 -37.86075 -36.89613 -34.45748 -34.13659 -32.38435 -31.13875 -30.45960 -28.27477 -26.23050 -25.18768 -23.61549 -23.10821 -22.12952 -20.71602 -19.65328 -18.76972 -17.62739 -16.67413 -16.33909 -15.88239 -15.24434 -14.93651 -14.59934 -14.44483 -14.32837 -14.15341 -13.84797 -13.71980 -13.44872 -13.21269 -12.58396 -12.44669 -12.20903 -12.19074 -11.97899 -11.33710 -11.29425 -11.14591 -10.84966 -10.80221 -10.74412 -10.61597 -10.50180 -10.03520 -9.85418 -9.51973 -9.27119 -9.00893 -8.48391 -8.29520 -7.32136 -6.06224 -4.07927 1.70314 2.88592 3.30642 3.33227 3.37026 3.41264 4.00403 4.38452 4.40128 4.67059 4.77509 4.80947 5.00876 5.12696 5.22518 5.27909 5.28876 5.36625 5.41985 5.47350 5.56968 5.65356 5.69611 5.75389 5.84083 5.86461 5.95184 6.05210 6.20217 6.25823 6.36201 6.43285 6.55099 6.57083 6.70919 7.08218 7.22157 7.28510 7.74577 8.00620 8.03736 8.12948 8.47874 8.70178 8.99464 9.56708 11.04642 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032625 B = 0.002932 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.020647 B = 9546.866209 C = 9755.418593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.132 4.132 4 C -0.181 4.181 5 C 0.159 3.841 6 N -0.747 5.747 7 C 0.707 3.293 8 O -0.598 6.598 9 N -0.625 5.625 10 C 0.133 3.867 11 C 0.051 3.949 12 N -0.535 5.535 13 C 0.194 3.806 14 C -0.509 4.509 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.272 1.272 22 C 0.041 3.959 23 C 0.119 3.881 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.396 0.604 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.097 0.903 38 H -0.009 1.009 39 H 0.031 0.969 40 H 0.261 0.739 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.560 8.263 -0.859 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.151 4.151 4 C -0.199 4.199 5 C 0.036 3.964 6 N -0.405 5.405 7 C 0.408 3.592 8 O -0.477 6.477 9 N -0.362 5.362 10 C 0.010 3.990 11 C -0.079 4.079 12 N -0.260 5.260 13 C 0.069 3.931 14 C -0.547 4.547 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.089 4.089 23 C -0.005 4.005 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.232 0.768 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.009 0.991 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.630 7.915 -0.082 22.097 hybrid contribution 0.717 -0.439 -0.587 1.025 sum -19.914 7.476 -0.669 21.281 Atomic orbital electron populations 1.21681 0.94812 1.01866 1.01899 1.20913 0.96320 0.94608 1.03397 1.22905 0.97630 0.97548 0.97005 1.22850 1.00227 0.99439 0.97407 1.20297 0.78894 0.98480 0.98733 1.45231 1.06816 1.41198 1.47283 1.15823 0.81377 0.81189 0.80771 1.90882 1.71116 1.42085 1.43580 1.47406 1.03385 1.36010 1.49426 1.21831 0.91384 0.92323 0.93424 1.22456 0.94916 0.93376 0.97104 1.62074 1.09087 1.23640 1.31223 1.19724 0.86833 0.94011 0.92530 1.21146 1.03508 1.36437 0.93656 0.91752 1.24994 0.98189 0.96260 0.95164 1.69958 1.27062 1.45165 1.11619 0.86488 0.80465 0.79434 0.80990 1.20707 1.21275 1.19713 1.22381 0.94331 0.97910 0.94291 1.21766 0.94435 0.90585 0.93729 0.92579 0.92703 0.92395 0.90913 0.90213 0.86810 0.86617 0.90482 0.91195 0.76805 0.91151 0.89374 0.95746 0.88486 0.99142 0.95075 0.92890 0.95554 0.90135 0.91270 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 37.16 0.37 -0.55 16 2 C -0.12 -0.86 6.06 -27.89 -0.17 -1.03 16 3 C -0.13 -0.96 9.51 -36.03 -0.34 -1.30 16 4 C -0.18 -1.43 9.63 -36.03 -0.35 -1.78 16 5 C 0.16 1.69 5.75 -5.19 -0.03 1.66 16 6 N -0.75 -9.01 5.47 -66.41 -0.36 -9.37 16 7 C 0.71 11.30 8.31 -86.91 -0.72 10.58 16 8 O -0.60 -11.58 15.82 5.29 0.08 -11.49 16 9 N -0.63 -9.79 3.00 -177.91 -0.53 -10.33 16 10 C 0.13 2.25 6.61 -3.37 -0.02 2.23 16 11 C 0.05 0.98 5.47 -3.47 -0.02 0.97 16 12 N -0.54 -11.12 4.62 -235.47 -1.09 -12.21 16 13 C 0.19 4.92 4.72 -4.97 -0.02 4.90 16 14 C -0.51 -13.97 8.41 -34.44 -0.29 -14.26 16 15 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 18 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 C 0.04 0.68 5.62 -3.71 -0.02 0.66 16 23 C 0.12 1.60 6.60 -3.60 -0.02 1.58 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.67 5.24 -51.92 -0.27 0.40 16 29 H 0.11 0.68 8.06 -52.49 -0.42 0.25 16 30 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.08 0.88 5.31 -51.93 -0.28 0.60 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.40 3.89 5.95 -40.82 -0.24 3.65 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.09 1.50 7.09 -51.93 -0.37 1.14 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 38 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 39 H 0.03 0.84 7.97 -51.92 -0.41 0.42 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 1.28 7.99 -51.93 -0.41 0.87 16 43 H 0.07 0.71 5.63 -51.93 -0.29 0.42 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -32.03 349.90 -9.86 -41.89 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.21 Total: 0.43 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -1.74 Total: 5.09 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -1.25 Total: -57.56 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.03 -9.86 -41.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601614013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.868 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds