Wall clock time and date at job start Tue Mar 31 2020 05:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47364 * 2 1 4 4 C 1.30998 * 120.00132 * 124.99686 * 3 2 1 5 5 C 1.50709 * 119.99801 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.46766 * 125.00222 * 5 4 3 7 7 C 1.34775 * 120.00030 * 179.97438 * 6 5 4 8 8 O 1.21586 * 119.99838 * 4.97924 * 7 6 5 9 9 N 1.34777 * 120.00146 * 184.97604 * 7 6 5 10 10 C 1.47080 * 120.88134 * 354.78605 * 9 7 6 11 11 C 1.53246 * 108.51671 * 231.20536 * 10 9 7 12 12 N 1.46898 * 109.33818 * 306.16709 * 11 10 9 13 13 C 1.46906 * 110.99672 * 187.25694 * 12 11 10 14 14 C 1.50700 * 109.46700 * 170.00399 * 13 12 11 15 15 H 1.07998 * 120.00480 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99641 * 179.72418 * 14 13 12 17 17 N 1.31519 * 119.99674 * 0.27405 * 16 14 13 18 18 Si 1.86797 * 120.00066 * 180.27083 * 16 14 13 19 19 H 1.48502 * 109.47070 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46840 * 119.99859 * 18 16 14 21 21 H 1.48497 * 109.47224 * 240.00235 * 18 16 14 22 22 C 1.46901 * 111.26814 * 63.11082 * 12 11 10 23 23 C 1.47079 * 120.87821 * 174.80603 * 9 7 6 24 24 H 1.09006 * 109.47408 * 300.00679 * 1 2 3 25 25 H 1.09005 * 109.47366 * 59.99995 * 1 2 3 26 26 H 1.08999 * 109.47726 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47551 * 239.99571 * 2 1 3 28 28 H 1.09006 * 109.47342 * 119.99449 * 2 1 3 29 29 H 1.07996 * 119.99760 * 304.99928 * 3 2 1 30 30 H 1.07996 * 120.00107 * 0.02562 * 4 3 2 31 31 H 1.08997 * 109.46839 * 5.00367 * 5 4 3 32 32 H 1.08994 * 109.46955 * 245.00152 * 5 4 3 33 33 H 0.97007 * 120.00185 * 0.02562 * 6 5 4 34 34 H 1.09001 * 109.62803 * 111.49557 * 10 9 7 35 35 H 1.08997 * 109.78781 * 351.00624 * 10 9 7 36 36 H 1.08997 * 109.48681 * 186.21159 * 11 10 9 37 37 H 1.08997 * 109.49324 * 66.12922 * 11 10 9 38 38 H 1.08995 * 109.47245 * 50.00204 * 13 12 11 39 39 H 1.08998 * 109.46879 * 290.00087 * 13 12 11 40 40 H 0.97001 * 119.99404 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.49108 * 56.85453 * 22 12 11 42 42 H 1.09000 * 109.48842 * 176.93396 * 22 12 11 43 43 H 1.09009 * 109.62580 * 248.50272 * 23 9 7 44 44 H 1.08998 * 109.63436 * 9.08372 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8641 1.8215 0.9293 5 6 3.3669 3.2422 0.9289 6 7 3.0843 3.8605 2.2266 7 6 3.4474 5.1376 2.4579 8 8 3.9271 5.8051 1.5619 9 7 3.2788 5.6750 3.6824 10 6 2.5974 4.9251 4.7485 11 6 1.4988 5.8132 5.3425 12 7 2.0822 7.0951 5.7600 13 6 1.0998 7.9077 6.4898 14 6 1.7913 9.0940 7.1107 15 1 2.8542 9.2305 6.9769 16 6 1.0659 10.0081 7.8453 17 7 -0.2284 9.8416 8.0085 18 14 1.9216 11.4827 8.6086 19 1 3.3691 11.4402 8.2794 20 1 1.3284 12.7328 8.0697 21 1 1.7476 11.4475 10.0829 22 6 2.6260 7.8323 4.6116 23 6 3.7708 7.0270 3.9876 24 1 -0.3634 0.5140 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.7066 2.1087 -0.7662 30 1 3.1902 1.1335 1.6953 31 1 2.8655 3.8048 0.1415 32 1 4.4422 3.2470 0.7506 33 1 2.6365 3.3505 2.9197 34 1 3.3144 4.6605 5.5257 35 1 2.1530 4.0192 4.3364 36 1 1.0568 5.3163 6.2060 37 1 0.7293 5.9912 4.5913 38 1 0.6393 7.3049 7.2725 39 1 0.3313 8.2554 5.7995 40 1 -0.7386 10.4844 8.5256 41 1 1.8407 7.9822 3.8707 42 1 3.0014 8.7997 4.9452 43 1 4.6006 6.9644 4.6917 44 1 4.1018 7.5123 3.0695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601614014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:51 Heat of formation + Delta-G solvation = -7.575677 kcal Electronic energy + Delta-G solvation = -21875.488534 eV Core-core repulsion = 18635.211481 eV Total energy + Delta-G solvation = -3240.277054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.19470 -37.77727 -36.65341 -34.54622 -34.31035 -32.40371 -31.34327 -30.49022 -28.26150 -26.30735 -25.25856 -23.25080 -22.56338 -22.04993 -20.73054 -20.21395 -19.11539 -17.91048 -16.47817 -16.18157 -15.72191 -15.23663 -14.82664 -14.76067 -14.50475 -14.25901 -14.06451 -13.80933 -13.59853 -13.43560 -13.34971 -12.76694 -12.33981 -12.23211 -12.13095 -11.93703 -11.41238 -11.28871 -11.21024 -11.12710 -10.83951 -10.72399 -10.59177 -10.49757 -10.04123 -9.85716 -9.54802 -9.26092 -9.07361 -8.48210 -8.30355 -7.31796 -6.06162 -4.07730 1.70804 2.88373 3.29835 3.32578 3.37445 3.42188 4.00729 4.33573 4.39823 4.62210 4.78836 4.87730 4.95432 5.03590 5.22882 5.24981 5.29036 5.36976 5.43219 5.48248 5.53976 5.57262 5.64156 5.68895 5.83003 5.83878 5.96262 6.05165 6.20451 6.27815 6.33037 6.43600 6.53741 6.57546 6.71592 7.08237 7.22610 7.29125 7.75069 8.00793 8.03713 8.13094 8.48152 8.70113 8.99989 9.56908 11.04776 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030588 B = 0.002900 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.176774 B = 9653.898749 C =10286.955730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.134 4.134 4 C -0.179 4.179 5 C 0.169 3.831 6 N -0.748 5.748 7 C 0.707 3.293 8 O -0.597 6.597 9 N -0.625 5.625 10 C 0.119 3.881 11 C 0.040 3.960 12 N -0.535 5.535 13 C 0.193 3.807 14 C -0.508 4.508 15 H 0.065 0.935 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.898 3.102 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.050 3.950 23 C 0.133 3.867 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.396 0.604 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.026 0.974 38 H 0.031 0.969 39 H -0.009 1.009 40 H 0.261 0.739 41 H 0.024 0.976 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 -18.793 -12.764 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.135 4.135 3 C -0.153 4.153 4 C -0.197 4.197 5 C 0.045 3.955 6 N -0.406 5.406 7 C 0.408 3.592 8 O -0.476 6.476 9 N -0.362 5.362 10 C -0.005 4.005 11 C -0.089 4.089 12 N -0.260 5.260 13 C 0.069 3.931 14 C -0.547 4.547 15 H 0.083 0.917 16 C -0.147 4.147 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.079 4.079 23 C 0.010 3.990 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.232 0.768 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.009 0.991 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.115 0.885 43 H 0.088 0.912 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.370 -18.310 -13.014 22.885 hybrid contribution -0.702 0.705 0.351 1.055 sum 3.668 -17.605 -12.663 21.994 Atomic orbital electron populations 1.21718 0.94872 1.01786 1.02301 1.20682 0.96371 0.94010 1.02484 1.23000 0.96094 0.97514 0.98684 1.22921 0.99739 0.96614 1.00438 1.20119 1.00590 0.89673 0.85072 1.45252 1.65663 1.12562 1.17151 1.15838 0.79021 0.81533 0.82794 1.90884 1.52241 1.61079 1.43416 1.47400 1.61003 1.18084 1.09715 1.21751 0.95300 0.93636 0.89820 1.22380 0.94555 0.93113 0.98878 1.62086 1.37749 1.03808 1.22374 1.19730 0.89070 0.91991 0.92355 1.21185 0.95126 1.06725 1.31620 0.91693 1.25002 0.94837 0.98329 0.96483 1.69972 1.06236 1.36651 1.40943 0.86432 0.79774 0.82270 0.78906 1.19586 1.21114 1.21017 1.22369 0.95826 0.98050 0.91650 1.21744 0.96728 0.80258 1.00292 0.92424 0.92517 0.92479 0.90951 0.91445 0.86968 0.86759 0.91428 0.91073 0.76784 0.90670 0.91275 0.90112 0.95567 0.95075 0.99123 0.92948 0.95739 0.88470 0.91157 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.15 0.37 -0.50 16 2 C -0.10 -0.58 6.38 -27.88 -0.18 -0.75 16 3 C -0.13 -0.96 9.12 -36.02 -0.33 -1.29 16 4 C -0.18 -1.38 9.24 -36.02 -0.33 -1.71 16 5 C 0.17 1.76 6.12 -5.19 -0.03 1.73 16 6 N -0.75 -8.95 5.46 -66.42 -0.36 -9.32 16 7 C 0.71 11.32 8.31 -86.92 -0.72 10.60 16 8 O -0.60 -11.66 15.80 5.29 0.08 -11.58 16 9 N -0.62 -9.81 3.01 -178.18 -0.54 -10.35 16 10 C 0.12 1.60 6.53 -3.60 -0.02 1.58 16 11 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 12 N -0.53 -11.17 4.62 -235.76 -1.09 -12.26 16 13 C 0.19 4.93 4.72 -4.97 -0.02 4.91 16 14 C -0.51 -13.98 8.41 -34.44 -0.29 -14.27 16 15 H 0.06 1.76 7.13 -52.49 -0.37 1.39 16 16 C 0.05 1.54 5.46 -17.81 -0.10 1.44 16 17 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 18 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.05 0.98 5.46 -3.70 -0.02 0.96 16 23 C 0.13 2.24 6.61 -3.60 -0.02 2.22 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.37 7.79 -51.93 -0.40 -0.03 16 29 H 0.11 0.80 7.84 -52.49 -0.41 0.39 16 30 H 0.11 0.77 7.84 -52.49 -0.41 0.35 16 31 H 0.07 0.77 7.79 -51.93 -0.40 0.36 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.40 3.86 6.01 -40.82 -0.25 3.62 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.71 5.75 -51.93 -0.30 0.41 16 36 H 0.08 1.29 7.99 -51.93 -0.41 0.88 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 39 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 2.02 6.67 -51.93 -0.35 1.67 16 43 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 44 H 0.09 1.53 7.04 -51.93 -0.37 1.16 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -32.19 354.43 -10.02 -42.22 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.45 Total: -0.34 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -1.72 Total: 5.58 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -1.25 Total: -57.62 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.19 -10.02 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601614014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.642 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds