Wall clock time and date at job start Tue Mar 31 2020 05:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47364 * 2 1 4 4 C 1.30998 * 120.00132 * 124.99686 * 3 2 1 5 5 C 1.50709 * 119.99801 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.46766 * 125.00222 * 5 4 3 7 7 C 1.34775 * 120.00030 * 179.97438 * 6 5 4 8 8 O 1.21586 * 119.99838 * 4.97924 * 7 6 5 9 9 N 1.34777 * 120.00146 * 184.97604 * 7 6 5 10 10 C 1.47080 * 120.88134 * 354.78605 * 9 7 6 11 11 C 1.53246 * 108.51671 * 231.20536 * 10 9 7 12 12 N 1.46898 * 109.33818 * 306.16709 * 11 10 9 13 13 C 1.46906 * 110.99672 * 187.25694 * 12 11 10 14 14 C 1.50700 * 109.46700 * 170.00399 * 13 12 11 15 15 H 1.07998 * 120.00480 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99641 * 179.72418 * 14 13 12 17 17 N 1.31519 * 119.99674 * 0.27405 * 16 14 13 18 18 Si 1.86797 * 120.00066 * 180.27083 * 16 14 13 19 19 H 1.48502 * 109.47070 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46840 * 119.99859 * 18 16 14 21 21 H 1.48497 * 109.47224 * 240.00235 * 18 16 14 22 22 C 1.46901 * 111.26814 * 63.11082 * 12 11 10 23 23 C 1.47079 * 120.87821 * 174.80603 * 9 7 6 24 24 H 1.09006 * 109.47408 * 300.00679 * 1 2 3 25 25 H 1.09005 * 109.47366 * 59.99995 * 1 2 3 26 26 H 1.08999 * 109.47726 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47551 * 239.99571 * 2 1 3 28 28 H 1.09006 * 109.47342 * 119.99449 * 2 1 3 29 29 H 1.07996 * 119.99760 * 304.99928 * 3 2 1 30 30 H 1.07996 * 120.00107 * 0.02562 * 4 3 2 31 31 H 1.08997 * 109.46839 * 5.00367 * 5 4 3 32 32 H 1.08994 * 109.46955 * 245.00152 * 5 4 3 33 33 H 0.97007 * 120.00185 * 0.02562 * 6 5 4 34 34 H 1.09001 * 109.62803 * 111.49557 * 10 9 7 35 35 H 1.08997 * 109.78781 * 351.00624 * 10 9 7 36 36 H 1.08997 * 109.48681 * 186.21159 * 11 10 9 37 37 H 1.08997 * 109.49324 * 66.12922 * 11 10 9 38 38 H 1.08995 * 109.47245 * 50.00204 * 13 12 11 39 39 H 1.08998 * 109.46879 * 290.00087 * 13 12 11 40 40 H 0.97001 * 119.99404 * 179.97438 * 17 16 14 41 41 H 1.08994 * 109.49108 * 56.85453 * 22 12 11 42 42 H 1.09000 * 109.48842 * 176.93396 * 22 12 11 43 43 H 1.09009 * 109.62580 * 248.50272 * 23 9 7 44 44 H 1.08998 * 109.63436 * 9.08372 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8641 1.8215 0.9293 5 6 3.3669 3.2422 0.9289 6 7 3.0843 3.8605 2.2266 7 6 3.4474 5.1376 2.4579 8 8 3.9271 5.8051 1.5619 9 7 3.2788 5.6750 3.6824 10 6 2.5974 4.9251 4.7485 11 6 1.4988 5.8132 5.3425 12 7 2.0822 7.0951 5.7600 13 6 1.0998 7.9077 6.4898 14 6 1.7913 9.0940 7.1107 15 1 2.8542 9.2305 6.9769 16 6 1.0659 10.0081 7.8453 17 7 -0.2284 9.8416 8.0085 18 14 1.9216 11.4827 8.6086 19 1 3.3691 11.4402 8.2794 20 1 1.3284 12.7328 8.0697 21 1 1.7476 11.4475 10.0829 22 6 2.6260 7.8323 4.6116 23 6 3.7708 7.0270 3.9876 24 1 -0.3634 0.5140 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.7066 2.1087 -0.7662 30 1 3.1902 1.1335 1.6953 31 1 2.8655 3.8048 0.1415 32 1 4.4422 3.2470 0.7506 33 1 2.6365 3.3505 2.9197 34 1 3.3144 4.6605 5.5257 35 1 2.1530 4.0192 4.3364 36 1 1.0568 5.3163 6.2060 37 1 0.7293 5.9912 4.5913 38 1 0.6393 7.3049 7.2725 39 1 0.3313 8.2554 5.7995 40 1 -0.7386 10.4844 8.5256 41 1 1.8407 7.9822 3.8707 42 1 3.0014 8.7997 4.9452 43 1 4.6006 6.9644 4.6917 44 1 4.1018 7.5123 3.0695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601614014.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:50 Heat of formation + Delta-G solvation = -29.075986 kcal Electronic energy + Delta-G solvation = -21876.420858 eV Core-core repulsion = 18635.211481 eV Total energy + Delta-G solvation = -3241.209377 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.45673 -39.19972 -37.43729 -35.99534 -35.38606 -34.35829 -32.35875 -31.59987 -29.94325 -27.55454 -26.62074 -24.58375 -23.94673 -23.13089 -22.15481 -21.04358 -20.20484 -19.11064 -18.50135 -17.44525 -16.89727 -16.69076 -16.06310 -15.96020 -15.65415 -15.52507 -15.30900 -15.21019 -14.89229 -14.56222 -14.19899 -14.04215 -13.84352 -13.49530 -13.09487 -12.88316 -12.75774 -12.73357 -12.59491 -12.36512 -12.31390 -12.16372 -11.85642 -11.76742 -11.74681 -11.39729 -11.18467 -10.62582 -10.39680 -10.00897 -9.58677 -9.05346 -8.21175 -6.30776 1.04693 1.42036 1.42840 1.56240 1.77863 2.06928 2.40687 2.95523 3.11384 3.22258 3.72949 3.94660 4.05926 4.08526 4.14463 4.25359 4.34008 4.42588 4.48513 4.49905 4.56430 4.59168 4.71194 4.74249 4.84580 4.94370 4.95402 5.01726 5.10857 5.16538 5.18379 5.22565 5.38203 5.42273 5.44750 5.64050 5.72275 5.85121 5.92310 6.03124 6.24979 6.57463 6.85106 6.92081 7.39070 7.48976 8.90268 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030588 B = 0.002900 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.176774 B = 9653.898749 C =10286.955730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.129 4.129 4 C -0.180 4.180 5 C 0.169 3.831 6 N -0.731 5.731 7 C 0.703 3.297 8 O -0.636 6.636 9 N -0.629 5.629 10 C 0.127 3.873 11 C 0.037 3.963 12 N -0.537 5.537 13 C 0.208 3.792 14 C -0.522 4.522 15 H 0.066 0.934 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.262 1.262 20 H -0.281 1.281 21 H -0.278 1.278 22 C 0.056 3.944 23 C 0.144 3.856 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.131 0.869 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.409 0.591 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.016 0.984 38 H 0.012 0.988 39 H -0.043 1.043 40 H 0.264 0.736 41 H 0.007 0.993 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.753 -20.510 -12.684 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.134 4.134 3 C -0.148 4.148 4 C -0.199 4.199 5 C 0.046 3.954 6 N -0.389 5.389 7 C 0.404 3.596 8 O -0.518 6.518 9 N -0.365 5.365 10 C 0.004 3.996 11 C -0.092 4.092 12 N -0.262 5.262 13 C 0.082 3.918 14 C -0.560 4.560 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.576 5.576 18 Si 0.794 3.206 19 H -0.186 1.186 20 H -0.207 1.207 21 H -0.204 1.204 22 C -0.073 4.073 23 C 0.021 3.979 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.127 0.873 30 H 0.149 0.851 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.248 0.752 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.034 0.966 38 H 0.030 0.970 39 H -0.025 1.025 40 H 0.073 0.927 41 H 0.025 0.975 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.354 -20.088 -12.935 24.485 hybrid contribution -1.071 1.175 0.255 1.610 sum 4.284 -18.913 -12.680 23.170 Atomic orbital electron populations 1.21726 0.94882 1.02287 1.01877 1.20706 0.96278 0.93087 1.03336 1.23156 0.95272 0.98258 0.98086 1.22793 1.00413 0.95155 1.01505 1.20179 1.00360 0.91044 0.83847 1.45170 1.64536 1.11158 1.18080 1.16012 0.78879 0.82457 0.82237 1.90858 1.54038 1.62363 1.44576 1.47415 1.61115 1.17721 1.10268 1.21845 0.94394 0.93653 0.89681 1.22538 0.95709 0.91722 0.99276 1.62015 1.36496 1.04615 1.23070 1.19382 0.88999 0.91921 0.91475 1.21501 0.95292 1.07558 1.31660 0.91581 1.25913 0.95473 1.01361 0.96960 1.70092 1.07783 1.37908 1.41792 0.85334 0.78981 0.78321 0.77993 1.18560 1.20739 1.20353 1.22289 0.96178 0.98053 0.90760 1.21508 0.95571 0.80814 1.00019 0.93107 0.92707 0.91559 0.90043 0.90647 0.87349 0.85081 0.92740 0.91562 0.75235 0.89186 0.87325 0.89065 0.96612 0.97000 1.02536 0.92712 0.97505 0.90088 0.89989 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 71.98 0.71 -0.74 16 2 C -0.10 -0.90 6.38 29.85 0.19 -0.71 16 3 C -0.13 -1.58 9.12 25.65 0.23 -1.34 16 4 C -0.18 -2.37 9.24 25.65 0.24 -2.13 16 5 C 0.17 3.27 6.12 85.64 0.52 3.79 16 6 N -0.73 -15.95 5.46 -482.30 -2.63 -18.58 16 7 C 0.70 21.58 8.31 179.05 1.49 23.07 16 8 O -0.64 -24.65 15.80 -3.99 -0.06 -24.72 16 9 N -0.63 -18.76 3.01 -835.91 -2.52 -21.27 16 10 C 0.13 3.10 6.53 86.35 0.56 3.66 16 11 C 0.04 1.21 5.62 86.39 0.49 1.69 16 12 N -0.54 -22.56 4.62 -899.82 -4.16 -26.72 16 13 C 0.21 10.95 4.72 85.56 0.40 11.35 16 14 C -0.52 -29.16 8.41 25.60 0.22 -28.94 16 15 H 0.07 3.60 7.13 -2.91 -0.02 3.58 16 16 C 0.00 0.05 5.46 84.66 0.46 0.51 16 17 N -0.94 -56.00 13.29 21.45 0.28 -55.72 16 18 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 22 C 0.06 2.25 5.46 86.38 0.47 2.72 16 23 C 0.14 4.80 6.61 86.35 0.57 5.37 16 24 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 25 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.60 7.79 -2.38 -0.02 0.59 16 29 H 0.11 1.40 7.84 -2.91 -0.02 1.38 16 30 H 0.13 1.32 7.84 -2.91 -0.02 1.29 16 31 H 0.05 1.21 7.79 -2.39 -0.02 1.19 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.41 6.62 6.01 -92.70 -0.56 6.06 16 34 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.11 1.81 5.75 -2.39 -0.01 1.80 16 36 H 0.09 2.81 7.99 -2.39 -0.02 2.80 16 37 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.01 0.66 7.97 -2.39 -0.02 0.64 16 39 H -0.04 -2.51 8.12 -2.39 -0.02 -2.53 16 40 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 41 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 42 H 0.08 3.45 6.67 -2.39 -0.02 3.44 16 43 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 44 H 0.08 2.92 7.04 -2.39 -0.02 2.90 16 Total: -1.00 -70.57 354.43 -0.09 -70.66 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.41 Total: 11.97 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 6.56 Total: 18.31 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -9.02 Total: -122.29 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.06 Total: -24.72 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -70.57 -0.09 -70.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601614014.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.588 kcal (2) G-P(sol) polarization free energy of solvation -70.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds