Wall clock time and date at job start Tue Mar 31 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99768 * 2 1 4 4 C 1.52999 * 109.47013 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47152 * 179.97438 * 4 3 2 6 6 C 1.34947 * 126.03808 * 125.30502 * 5 4 3 7 7 C 1.35312 * 107.74649 * 180.14679 * 6 5 4 8 8 C 1.50709 * 126.04157 * 179.87511 * 7 6 5 9 9 N 1.46897 * 109.47130 * 269.71817 * 8 7 6 10 10 C 1.46896 * 111.00246 * 179.97438 * 9 8 7 11 11 C 1.52998 * 109.47357 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.47104 * 55.00451 * 11 10 9 13 13 C 1.52998 * 109.47026 * 294.99646 * 11 10 9 14 14 C 1.53002 * 109.46886 * 174.99797 * 11 10 9 15 15 C 1.50706 * 109.47153 * 184.99546 * 14 11 10 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 C 1.39867 * 107.92120 * 359.61534 * 7 6 5 24 24 N 1.30833 * 108.19842 * 0.24055 * 23 7 6 25 25 H 1.08993 * 109.47139 * 300.00257 * 1 2 3 26 26 H 1.08995 * 109.46900 * 60.00434 * 1 2 3 27 27 H 1.08998 * 109.46975 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46931 * 59.99942 * 3 2 1 29 29 H 1.08999 * 109.46855 * 299.99818 * 3 2 1 30 30 H 1.08997 * 109.46906 * 59.99531 * 4 3 2 31 31 H 1.09005 * 109.46801 * 300.00210 * 4 3 2 32 32 H 1.07999 * 126.12615 * 0.02562 * 6 5 4 33 33 H 1.08999 * 109.47239 * 149.71513 * 8 7 6 34 34 H 1.09002 * 109.46874 * 29.71532 * 8 7 6 35 35 H 1.00907 * 110.99976 * 56.04376 * 9 8 7 36 36 H 1.09001 * 109.47205 * 59.99991 * 10 9 8 37 37 H 1.09002 * 109.47023 * 300.00245 * 10 9 8 38 38 H 1.09003 * 109.46843 * 179.97438 * 13 11 10 39 39 H 1.08990 * 109.47503 * 300.00380 * 13 11 10 40 40 H 1.09001 * 109.46970 * 60.00396 * 13 11 10 41 41 H 1.09004 * 109.47178 * 65.00336 * 14 11 10 42 42 H 1.08993 * 109.47411 * 305.00018 * 14 11 10 43 43 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 44 44 H 1.08001 * 125.90161 * 180.21985 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0300 2.9924 0.8906 7 6 5.3260 4.2668 0.5452 8 6 6.2847 5.1805 1.2644 9 7 5.5602 5.9392 2.2926 10 6 6.4651 6.8421 3.0162 11 6 5.6761 7.6128 4.0766 12 1 5.1551 6.9085 4.7251 13 6 4.6571 8.5252 3.3912 14 6 6.6379 8.4598 4.9124 15 6 5.8792 9.1229 6.0331 16 1 4.8174 8.9565 6.1388 17 6 6.5406 9.9420 6.9233 18 7 7.8347 10.1404 6.7978 19 14 5.6004 10.7635 8.3128 20 1 6.5349 11.5808 9.1275 21 1 4.5430 11.6385 7.7454 22 1 4.9756 9.7241 9.1698 23 6 4.5894 4.5843 -0.6006 24 7 3.8729 3.5398 -0.9282 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8574 0.6436 -0.8891 31 1 3.8567 0.6439 0.8909 32 1 5.4382 2.4490 1.7299 33 1 6.7324 5.8720 0.5505 34 1 7.0682 4.5869 1.7355 35 1 5.0824 5.3195 2.9298 36 1 6.9143 7.5452 2.3148 37 1 7.2496 6.2597 3.4995 38 1 4.0947 9.0739 4.1467 39 1 5.1782 9.2294 2.7428 40 1 3.9719 7.9217 2.7957 41 1 7.0932 9.2226 4.2807 42 1 7.4166 7.8209 5.3290 43 1 8.3231 9.7137 6.0764 44 1 4.6085 5.5287 -1.1242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602652620.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:17 Heat of formation + Delta-G solvation = 13.214459 kcal Electronic energy + Delta-G solvation = -21102.787664 eV Core-core repulsion = 17863.412139 eV Total energy + Delta-G solvation = -3239.375526 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39385 -38.42898 -36.97131 -34.68793 -33.71929 -32.11149 -30.39854 -29.49796 -26.92906 -26.40179 -25.66314 -24.03015 -23.53118 -22.18143 -20.94831 -20.35641 -19.26340 -17.55804 -16.73915 -16.66091 -16.27351 -15.78924 -15.22877 -15.03145 -14.46274 -14.26879 -14.18773 -13.77630 -13.63548 -13.48080 -13.00535 -12.88891 -12.46662 -12.09217 -11.90922 -11.82127 -11.73098 -11.51989 -11.28701 -10.95251 -10.77363 -10.63542 -10.21479 -10.16876 -10.06082 -9.77609 -9.60266 -9.42952 -8.64852 -8.41812 -8.26748 -8.06247 -6.29490 -3.97263 1.66805 2.11282 2.66767 3.34241 3.46843 3.48945 3.67443 4.19626 4.45203 4.56218 4.60931 4.68341 4.75348 4.82316 4.88383 4.90005 5.09866 5.18897 5.19351 5.22348 5.38010 5.46858 5.63162 5.70816 5.77086 5.83381 6.06785 6.10161 6.36963 6.46523 6.49451 6.56042 6.64087 6.79368 6.93970 7.11411 7.16505 7.35157 7.45590 7.53118 7.61208 7.68982 8.30609 8.53643 8.95888 9.73990 11.10924 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023940 B = 0.002455 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.318475 B =11402.915319 C =12116.018277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.051 3.949 4 C 0.141 3.859 5 N -0.376 5.376 6 C 0.060 3.940 7 C -0.223 4.223 8 C 0.135 3.865 9 N -0.683 5.683 10 C 0.063 3.937 11 C -0.075 4.075 12 H 0.053 0.947 13 C -0.122 4.122 14 C 0.014 3.986 15 C -0.593 4.593 16 H 0.049 0.951 17 C 0.011 3.989 18 N -0.916 5.916 19 Si 1.067 2.933 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.289 1.289 23 C 0.071 3.929 24 N -0.302 5.302 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.172 0.828 33 H 0.077 0.923 34 H 0.030 0.970 35 H 0.336 0.664 36 H 0.066 0.934 37 H 0.022 0.978 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.043 0.957 41 H 0.007 0.993 42 H 0.003 0.997 43 H 0.268 0.732 44 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 -19.616 -15.076 26.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.027 4.027 4 C 0.019 3.981 5 N -0.160 5.160 6 C -0.086 4.086 7 C -0.235 4.235 8 C 0.005 3.995 9 N -0.313 5.313 10 C -0.066 4.066 11 C -0.094 4.094 12 H 0.072 0.928 13 C -0.179 4.179 14 C -0.024 4.024 15 C -0.631 4.631 16 H 0.067 0.933 17 C -0.192 4.192 18 N -0.553 5.553 19 Si 0.896 3.104 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.216 1.216 23 C -0.116 4.116 24 N -0.123 5.123 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.189 0.811 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.153 0.847 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.025 0.975 42 H 0.021 0.979 43 H 0.078 0.922 44 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.358 -18.926 -15.036 26.298 hybrid contribution 0.696 -1.130 -0.141 1.335 sum -9.662 -20.056 -15.177 26.944 Atomic orbital electron populations 1.22778 0.79965 1.03057 1.00454 1.87769 1.20587 1.27097 1.95625 1.22673 0.92726 0.85177 1.02087 1.21317 0.92490 0.79319 1.04991 1.48312 1.34035 1.11739 1.21903 1.22357 0.94572 0.95759 0.95934 1.20062 1.07650 0.94764 1.01010 1.20141 0.92083 0.93405 0.93886 1.60570 1.30518 1.22935 1.17323 1.22165 0.93785 0.94843 0.95809 1.21050 0.96985 0.96818 0.94543 0.92824 1.21570 0.98459 0.98523 0.99346 1.19255 0.94397 0.94143 0.94586 1.22035 0.96209 1.31287 1.13563 0.93261 1.25824 0.96686 0.96007 1.00665 1.70780 1.07691 1.43446 1.33373 0.83569 0.74928 0.76239 0.75682 1.20879 1.21485 1.21566 1.23819 0.94244 0.97498 0.95993 1.77326 1.24325 0.96896 1.13723 0.93729 0.93728 0.89205 0.92554 0.91601 0.89024 0.87843 0.81123 0.90429 0.95147 0.84682 0.91545 0.95961 0.92772 0.94247 0.93760 0.97465 0.97900 0.92199 0.79918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.32 10.70 -35.23 -0.38 -3.70 16 3 C 0.05 0.42 6.12 37.16 0.23 0.65 16 4 C 0.14 1.08 6.88 -4.05 -0.03 1.06 16 5 N -0.38 -3.89 3.68 -61.37 -0.23 -4.11 16 6 C 0.06 0.60 11.36 -17.22 -0.20 0.40 16 7 C -0.22 -2.54 5.61 -105.05 -0.59 -3.13 16 8 C 0.13 1.61 6.17 -4.97 -0.03 1.58 16 9 N -0.68 -9.78 5.94 -115.06 -0.68 -10.46 16 10 C 0.06 1.07 5.07 -3.83 -0.02 1.05 16 11 C -0.07 -1.55 2.48 -90.62 -0.22 -1.77 16 12 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 14 C 0.01 0.35 3.76 -27.88 -0.10 0.25 16 15 C -0.59 -16.91 8.41 -34.44 -0.29 -17.20 16 16 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 17 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 18 N -0.92 -28.40 13.65 55.43 0.76 -27.65 16 19 Si 1.07 25.64 29.90 -169.99 -5.08 20.55 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.07 0.84 11.96 -17.37 -0.21 0.63 16 24 N -0.30 -3.73 12.42 30.62 0.38 -3.35 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 0.59 8.07 -51.93 -0.42 0.17 16 32 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.34 4.68 8.72 -39.29 -0.34 4.34 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 1.16 6.95 -51.93 -0.36 0.80 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 41 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 42 H 0.00 0.07 8.00 -51.93 -0.42 -0.34 16 43 H 0.27 8.26 7.22 -40.82 -0.29 7.97 16 44 H 0.18 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -32.96 366.41 -7.57 -40.52 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.74 Total: -0.30 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -0.12 Total: -17.04 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.23 Total: -45.57 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: -0.38 Total: -3.70 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.96 -7.57 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602652620.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.738 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds