Wall clock time and date at job start Tue Mar 31 2020 05:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00003 * 2 1 4 4 C 1.52997 * 109.47265 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.47145 * 179.97438 * 4 3 2 6 6 C 1.34945 * 126.03650 * 125.30779 * 5 4 3 7 7 C 1.35317 * 107.74781 * 180.14843 * 6 5 4 8 8 C 1.50693 * 126.04069 * 179.87209 * 7 6 5 9 9 N 1.46897 * 109.47318 * 269.71600 * 8 7 6 10 10 C 1.46910 * 111.00178 * 180.02562 * 9 8 7 11 11 C 1.52992 * 109.47127 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47103 * 304.99844 * 11 10 9 13 13 C 1.52997 * 109.47482 * 65.00091 * 11 10 9 14 14 C 1.52999 * 109.46961 * 185.00452 * 11 10 9 15 15 C 1.50704 * 109.47137 * 175.00116 * 14 11 10 16 16 H 1.07991 * 120.00119 * 359.97438 * 15 14 11 17 17 C 1.37875 * 119.99876 * 179.97438 * 15 14 11 18 18 N 1.31514 * 120.00009 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00139 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46942 * 90.00357 * 19 17 15 21 21 H 1.48500 * 109.47201 * 210.00165 * 19 17 15 22 22 H 1.48497 * 109.47273 * 330.00530 * 19 17 15 23 23 C 1.39870 * 107.91568 * 359.61531 * 7 6 5 24 24 N 1.30832 * 108.20670 * 0.23597 * 23 7 6 25 25 H 1.08997 * 109.47095 * 300.00276 * 1 2 3 26 26 H 1.09004 * 109.46700 * 60.00228 * 1 2 3 27 27 H 1.09000 * 109.46685 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47288 * 59.99638 * 3 2 1 29 29 H 1.09001 * 109.47058 * 300.00229 * 3 2 1 30 30 H 1.09002 * 109.47510 * 60.00371 * 4 3 2 31 31 H 1.09000 * 109.47593 * 299.99668 * 4 3 2 32 32 H 1.08005 * 126.12874 * 0.02562 * 6 5 4 33 33 H 1.09005 * 109.47095 * 149.71360 * 8 7 6 34 34 H 1.09006 * 109.47400 * 29.71999 * 8 7 6 35 35 H 1.00896 * 111.00466 * 303.95385 * 9 8 7 36 36 H 1.08996 * 109.46545 * 59.99934 * 10 9 8 37 37 H 1.09001 * 109.46699 * 300.00610 * 10 9 8 38 38 H 1.09002 * 109.47153 * 59.99783 * 13 11 10 39 39 H 1.09001 * 109.46832 * 299.99974 * 13 11 10 40 40 H 1.09004 * 109.47261 * 179.97438 * 13 11 10 41 41 H 1.09006 * 109.47194 * 294.99813 * 14 11 10 42 42 H 1.08997 * 109.47756 * 54.99294 * 14 11 10 43 43 H 0.97002 * 119.99910 * 180.02562 * 18 17 15 44 44 H 1.08003 * 125.89659 * 180.22221 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5231 0.0000 6 6 5.0300 2.9924 0.8906 7 6 5.3260 4.2669 0.5453 8 6 6.2847 5.1805 1.2644 9 7 5.5601 5.9391 2.2927 10 6 6.4649 6.8430 3.0156 11 6 5.6760 7.6135 4.0760 12 1 4.8367 8.1246 3.6044 13 6 5.1512 6.6374 5.1308 14 6 6.5899 8.6430 4.7436 15 6 5.7846 9.4844 5.7000 16 1 4.7267 9.3033 5.8193 17 6 6.3984 10.4855 6.4225 18 7 5.6955 11.2200 7.2567 19 14 8.2285 10.7983 6.2166 20 1 8.4422 11.7907 5.1328 21 1 8.7866 11.3258 7.4877 22 1 8.9116 9.5273 5.8658 23 6 4.5893 4.5844 -0.6005 24 7 3.8729 3.5399 -0.9283 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8464 -0.8900 30 1 3.8575 0.6437 -0.8891 31 1 3.8568 0.6440 0.8909 32 1 5.4383 2.4490 1.7299 33 1 6.7324 5.8720 0.5506 34 1 7.0683 4.5869 1.7355 35 1 4.7876 6.4478 1.8897 36 1 6.9134 7.5459 2.3136 37 1 7.2500 6.2611 3.4986 38 1 5.9905 6.1263 5.6025 39 1 4.5001 5.9040 4.6551 40 1 4.5895 7.1865 5.8866 41 1 7.3799 8.1275 5.2899 42 1 7.0338 9.2834 3.9814 43 1 6.1273 11.9246 7.7648 44 1 4.6085 5.5288 -1.1241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602653224.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:19 Heat of formation + Delta-G solvation = 20.376052 kcal Electronic energy + Delta-G solvation = -21117.154622 eV Core-core repulsion = 17878.089646 eV Total energy + Delta-G solvation = -3239.064976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.38716 -38.41038 -36.97176 -34.63581 -33.60257 -32.05105 -30.47152 -29.56095 -27.46589 -26.79417 -25.65232 -23.99254 -23.56959 -21.83115 -20.98008 -20.31079 -19.04205 -17.51432 -16.74831 -16.71307 -16.20120 -15.77537 -15.33466 -15.05593 -14.57599 -14.36271 -14.10111 -13.85687 -13.65550 -13.42666 -12.99542 -12.58583 -12.43435 -12.29357 -12.02852 -11.92090 -11.77575 -11.67159 -11.54286 -10.92438 -10.70433 -10.61408 -10.34185 -10.19074 -9.88439 -9.62206 -9.60379 -9.42605 -9.02631 -8.60221 -8.48770 -8.06749 -5.99204 -3.95846 1.69584 2.12416 2.64554 3.33248 3.35787 3.40774 3.44661 4.21656 4.47372 4.49328 4.64486 4.66536 4.76509 4.81679 4.90358 4.90466 5.15580 5.21110 5.24121 5.27108 5.31215 5.34676 5.59487 5.67351 5.77530 5.81019 6.08262 6.09791 6.35084 6.45483 6.47799 6.56892 6.63683 6.81484 6.89611 7.08565 7.18344 7.32016 7.36001 7.51441 7.52683 7.68386 7.86337 8.60822 9.06935 9.63819 11.14268 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028945 B = 0.002474 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.116831 B =11314.301481 C =11913.410254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.051 3.949 4 C 0.141 3.859 5 N -0.377 5.377 6 C 0.078 3.922 7 C -0.228 4.228 8 C 0.135 3.865 9 N -0.684 5.684 10 C 0.061 3.939 11 C -0.074 4.074 12 H 0.059 0.941 13 C -0.124 4.124 14 C -0.010 4.010 15 C -0.511 4.511 16 H 0.073 0.927 17 C 0.063 3.937 18 N -0.906 5.906 19 Si 0.879 3.121 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.266 1.266 23 C 0.057 3.943 24 N -0.301 5.301 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.175 0.825 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.339 0.661 36 H 0.023 0.977 37 H 0.066 0.934 38 H 0.038 0.962 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.016 0.984 42 H 0.008 0.992 43 H 0.262 0.738 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.347 -21.667 -16.475 27.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.027 4.027 4 C 0.019 3.981 5 N -0.160 5.160 6 C -0.068 4.068 7 C -0.240 4.240 8 C 0.005 3.995 9 N -0.315 5.315 10 C -0.068 4.068 11 C -0.092 4.092 12 H 0.077 0.923 13 C -0.181 4.181 14 C -0.048 4.048 15 C -0.549 4.549 16 H 0.091 0.909 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.706 3.294 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.130 4.130 24 N -0.122 5.122 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.192 0.808 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.156 0.844 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.026 0.974 43 H 0.071 0.929 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.088 -22.840 -16.693 28.744 hybrid contribution 1.467 1.611 -0.057 2.180 sum -3.620 -21.229 -16.750 27.282 Atomic orbital electron populations 1.22780 0.79972 1.03050 1.00453 1.87767 1.20581 1.27098 1.95623 1.22673 0.92732 0.85185 1.02080 1.21327 0.92493 0.79286 1.05024 1.48350 1.34078 1.11706 1.21911 1.22360 0.93639 0.95655 0.95185 1.20034 1.07936 0.95508 1.00486 1.20119 0.93439 0.94141 0.91768 1.60578 1.11809 1.30652 1.28448 1.22181 0.95290 0.93548 0.95770 1.20995 0.98091 0.95570 0.94586 0.92293 1.21588 1.00097 0.97973 0.98432 1.19621 0.95534 0.93996 0.95606 1.21143 0.97015 1.14904 1.21873 0.90853 1.25043 0.97869 0.95805 0.95000 1.69918 1.36032 1.21478 1.27104 0.86798 0.86394 0.78805 0.77379 1.20460 1.21522 1.19049 1.23835 0.95040 0.97797 0.96342 1.77308 1.24196 0.96861 1.13789 0.93707 0.93752 0.89213 0.92486 0.91669 0.89055 0.87732 0.80807 0.94821 0.90816 0.84365 0.95831 0.91592 0.94274 0.93731 0.92357 0.96620 0.97383 0.92872 0.80210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.33 10.70 -35.23 -0.38 -3.70 16 3 C 0.05 0.42 6.12 37.16 0.23 0.65 16 4 C 0.14 1.08 6.88 -4.04 -0.03 1.05 16 5 N -0.38 -3.85 3.68 -61.36 -0.23 -4.08 16 6 C 0.08 0.78 11.36 -17.22 -0.20 0.58 16 7 C -0.23 -2.50 5.61 -105.06 -0.59 -3.09 16 8 C 0.14 1.54 6.17 -4.98 -0.03 1.51 16 9 N -0.68 -9.33 5.94 -115.06 -0.68 -10.01 16 10 C 0.06 0.97 5.07 -3.82 -0.02 0.95 16 11 C -0.07 -1.44 2.48 -90.63 -0.22 -1.66 16 12 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 14 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 15 C -0.51 -14.51 8.96 -34.44 -0.31 -14.81 16 16 H 0.07 2.24 7.30 -52.49 -0.38 1.85 16 17 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 18 N -0.91 -28.12 13.96 55.43 0.77 -27.35 16 19 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 23 C 0.06 0.63 11.96 -17.37 -0.21 0.42 16 24 N -0.30 -3.61 12.42 30.62 0.38 -3.23 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.60 8.07 -51.93 -0.42 0.18 16 32 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.34 4.58 8.72 -39.29 -0.34 4.24 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 40 H 0.06 1.25 6.95 -51.93 -0.36 0.88 16 41 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 42 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.18 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 364.12 15.07 5.49 5.49 Total: -1.00 -32.62 364.12 -7.21 -39.83 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.76 Total: -0.46 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -0.13 Total: -13.71 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.24 Total: -44.66 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: -0.38 Total: -3.70 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.62 -7.21 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602653224.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.202 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds