Wall clock time and date at job start Tue Mar 31 2020 05:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36887 * 126.39676 * 2 1 4 4 C 1.34661 * 106.81890 * 179.97438 * 3 2 1 5 5 N 1.34126 * 108.02139 * 359.97438 * 4 3 2 6 6 C 1.30499 * 109.25754 * 359.72645 * 5 4 3 7 7 C 1.50697 * 125.65103 * 180.29367 * 6 5 4 8 8 H 1.09000 * 109.46948 * 195.17442 * 7 6 5 9 9 N 1.46895 * 109.47090 * 315.17493 * 7 6 5 10 10 C 1.46900 * 110.99723 * 274.29993 * 9 7 6 11 11 C 1.53001 * 109.47353 * 185.22767 * 10 9 7 12 12 C 1.50701 * 109.47438 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99803 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99719 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00307 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99647 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47105 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47157 * 119.99791 * 16 14 12 19 19 H 1.48507 * 109.47086 * 239.99594 * 16 14 12 20 20 C 1.52999 * 109.47194 * 75.17493 * 7 6 5 21 21 C 1.52999 * 109.47358 * 54.95232 * 20 7 6 22 22 C 1.53003 * 109.47321 * 174.95313 * 20 7 6 23 23 C 1.53000 * 109.47104 * 294.95189 * 20 7 6 24 24 O 1.42900 * 109.47165 * 180.02562 * 23 20 7 25 25 H 1.09006 * 109.46539 * 90.03075 * 1 2 3 26 26 H 1.08992 * 109.47608 * 330.02695 * 1 2 3 27 27 H 1.08995 * 109.46934 * 210.02417 * 1 2 3 28 28 H 1.08003 * 126.58548 * 0.03098 * 3 2 1 29 29 H 1.08000 * 125.99057 * 179.97438 * 4 3 2 30 30 H 1.00897 * 111.00732 * 38.25434 * 9 7 6 31 31 H 1.09000 * 109.47594 * 305.23211 * 10 9 7 32 32 H 1.09004 * 109.47034 * 65.22876 * 10 9 7 33 33 H 1.09000 * 109.47133 * 300.00726 * 11 10 9 34 34 H 1.09004 * 109.46962 * 60.00065 * 11 10 9 35 35 H 0.97004 * 119.99756 * 180.02562 * 15 14 12 36 36 H 1.08994 * 109.47234 * 60.00183 * 21 20 7 37 37 H 1.09000 * 109.47410 * 180.02562 * 21 20 7 38 38 H 1.09000 * 109.47524 * 300.00004 * 21 20 7 39 39 H 1.09000 * 109.46827 * 58.25735 * 22 20 7 40 40 H 1.08996 * 109.47289 * 178.26047 * 22 20 7 41 41 H 1.08997 * 109.46968 * 298.26108 * 22 20 7 42 42 H 1.08995 * 109.47305 * 300.00070 * 23 20 7 43 43 H 1.09007 * 109.47246 * 60.00327 * 23 20 7 44 44 H 0.96700 * 113.99967 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5460 0.6506 0.0006 5 7 3.5096 -0.6902 0.0015 6 6 2.2664 -1.0869 0.0074 7 6 1.8020 -2.5205 0.0166 8 1 0.7457 -2.5619 -0.2490 9 7 2.5826 -3.2944 -0.9579 10 6 1.9952 -3.1952 -2.3007 11 6 2.7554 -4.1143 -3.2590 12 6 2.1532 -4.0121 -4.6367 13 1 1.3121 -3.3575 -4.8112 14 6 2.6753 -4.7552 -5.6741 15 7 3.6992 -5.5528 -5.4615 16 14 1.9293 -4.6280 -7.3820 17 1 0.7963 -3.6685 -7.3570 18 1 2.9607 -4.1520 -8.3384 19 1 1.4376 -5.9630 -7.8080 20 6 2.0001 -3.1119 1.4137 21 6 1.2897 -2.2329 2.4450 22 6 1.4141 -4.5246 1.4574 23 6 3.4947 -3.1696 1.7358 24 8 3.6798 -3.7224 3.0405 25 1 -0.3632 -0.0006 -1.0278 26 1 -0.3634 0.8901 0.5134 27 1 -0.3633 -0.8897 0.5142 28 1 1.9612 2.1346 0.0005 29 1 4.4368 1.2613 0.0003 30 1 3.5480 -3.0008 -0.9629 31 1 0.9483 -3.4961 -2.2625 32 1 2.0648 -2.1659 -2.6526 33 1 3.8023 -3.8134 -3.2972 34 1 2.6858 -5.1436 -2.9071 35 1 4.0667 -6.0753 -6.1915 36 1 0.2250 -2.1918 2.2156 37 1 1.4313 -2.6540 3.4404 38 1 1.7072 -1.2265 2.4140 39 1 1.8988 -5.1425 0.7016 40 1 1.5827 -4.9575 2.4434 41 1 0.3434 -4.4800 1.2584 42 1 4.0008 -3.7958 1.0011 43 1 3.9123 -2.1631 1.7047 44 1 4.6056 -3.7888 3.3118 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602881207.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:48 Heat of formation + Delta-G solvation = 2.593088 kcal Electronic energy + Delta-G solvation = -23324.403324 eV Core-core repulsion = 20084.567221 eV Total energy + Delta-G solvation = -3239.836103 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.16930 -38.47120 -35.94680 -34.22621 -33.93493 -32.56553 -30.17464 -28.67198 -27.12214 -26.89340 -25.97456 -25.21729 -23.35096 -21.30767 -20.51340 -20.21629 -18.35065 -17.29522 -17.17536 -16.32352 -15.77308 -15.09095 -14.92094 -14.68627 -14.39499 -14.09595 -13.90823 -13.59818 -13.30537 -12.92002 -12.85959 -12.79080 -12.48929 -12.29996 -12.04085 -11.94572 -11.66169 -11.15959 -10.97106 -10.90729 -10.78659 -10.47321 -10.27006 -10.03494 -9.93470 -9.66327 -9.42074 -9.37524 -9.12335 -8.37038 -8.29529 -7.93420 -5.97766 -4.00204 2.08516 2.79195 3.23205 3.31685 3.38893 3.42375 4.33506 4.40173 4.45643 4.55576 4.64935 4.88532 4.95319 5.05159 5.21330 5.26342 5.28593 5.35630 5.38310 5.53408 5.71783 5.76703 5.80505 5.88636 6.04356 6.12455 6.17141 6.27570 6.31564 6.33712 6.41770 6.47529 6.72719 6.81760 6.98044 7.18915 7.42967 7.75793 7.79692 7.83210 7.96133 8.10218 8.19858 8.45084 9.06950 9.63255 11.13676 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016646 B = 0.004773 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.664494 B = 5865.025040 C = 6665.026415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.456 5.456 3 C -0.067 4.067 4 C -0.027 4.027 5 N -0.487 5.487 6 C 0.193 3.807 7 C 0.179 3.821 8 H 0.088 0.912 9 N -0.666 5.666 10 C 0.066 3.934 11 C 0.028 3.972 12 C -0.520 4.520 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.040 4.040 21 C -0.137 4.137 22 C -0.130 4.130 23 C 0.082 3.918 24 O -0.577 6.577 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.170 0.830 29 H 0.167 0.833 30 H 0.353 0.647 31 H 0.056 0.944 32 H 0.013 0.987 33 H 0.015 0.985 34 H 0.026 0.974 35 H 0.260 0.740 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.281 11.052 16.333 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.139 5.139 3 C -0.200 4.200 4 C -0.175 4.175 5 N -0.205 5.205 6 C -0.071 4.071 7 C 0.066 3.934 8 H 0.106 0.894 9 N -0.297 5.297 10 C -0.062 4.062 11 C -0.009 4.009 12 C -0.559 4.559 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.041 4.041 21 C -0.195 4.195 22 C -0.187 4.187 23 C 0.005 3.995 24 O -0.382 6.382 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.187 0.813 29 H 0.184 0.816 30 H 0.173 0.827 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.613 9.792 16.321 19.844 hybrid contribution -0.230 1.887 -1.424 2.375 sum -5.843 11.680 14.897 19.811 Atomic orbital electron populations 1.22079 0.77089 1.04497 1.03829 1.45335 1.07390 1.06675 1.54484 1.22633 0.91522 0.92427 1.13425 1.22242 0.96255 0.91290 1.07691 1.70104 1.18428 1.11848 1.20155 1.24603 0.86201 0.92047 1.04280 1.20224 0.98325 0.80961 0.93909 0.89435 1.60870 1.06817 1.54502 1.07467 1.22216 0.98856 0.98435 0.86668 1.19029 0.95109 0.94836 0.91960 1.21185 1.15731 1.24953 0.94036 0.92919 1.24987 0.95044 0.95332 0.98926 1.69985 1.23885 1.27167 1.32048 0.86557 0.79116 0.77808 0.84611 1.19886 1.21034 1.20959 1.20413 0.95068 0.96539 0.92092 1.21842 0.98944 0.99079 0.99664 1.21696 0.99607 0.94969 1.02442 1.22283 0.95564 0.98135 0.83524 1.86380 1.30838 1.86468 1.34529 0.90360 0.89693 0.89396 0.81303 0.81598 0.82701 0.92525 0.96874 0.96686 0.95520 0.93050 0.93434 0.91526 0.93403 0.90691 0.92368 0.93604 0.92398 0.92419 0.78058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 10.76 59.85 0.64 1.23 16 2 N -0.46 -5.67 3.15 -121.28 -0.38 -6.05 16 3 C -0.07 -0.80 11.58 -16.56 -0.19 -0.99 16 4 C -0.03 -0.36 11.87 -17.82 -0.21 -0.58 16 5 N -0.49 -7.85 9.01 -10.82 -0.10 -7.95 16 6 C 0.19 2.88 4.65 -155.42 -0.72 2.15 16 7 C 0.18 2.67 1.55 -68.87 -0.11 2.57 16 8 H 0.09 1.25 6.63 -51.93 -0.34 0.90 16 9 N -0.67 -12.07 4.98 -107.95 -0.54 -12.61 16 10 C 0.07 1.41 5.45 -3.82 -0.02 1.39 16 11 C 0.03 0.74 5.28 -27.88 -0.15 0.60 16 12 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.15 13.29 55.43 0.74 -26.42 16 16 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 C -0.04 -0.54 0.45 -154.51 -0.07 -0.61 16 21 C -0.14 -1.66 7.96 37.16 0.30 -1.36 16 22 C -0.13 -1.79 8.26 37.16 0.31 -1.48 16 23 C 0.08 1.17 5.28 37.16 0.20 1.36 16 24 O -0.58 -7.44 12.28 -35.23 -0.43 -7.88 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 0.69 6.60 -51.93 -0.34 0.35 16 28 H 0.17 1.41 8.06 -52.48 -0.42 0.98 16 29 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.35 6.77 7.32 -39.29 -0.29 6.48 16 31 H 0.06 1.17 7.92 -51.93 -0.41 0.76 16 32 H 0.01 0.29 8.11 -51.93 -0.42 -0.13 16 33 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.05 0.49 7.48 -51.93 -0.39 0.10 16 37 H 0.07 0.82 7.68 -51.93 -0.40 0.42 16 38 H 0.05 0.61 7.07 -51.93 -0.37 0.25 16 39 H 0.07 1.17 7.71 -51.93 -0.40 0.77 16 40 H 0.06 0.79 7.63 -51.93 -0.40 0.39 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.89 7.15 -51.93 -0.37 0.52 16 43 H 0.06 0.87 6.22 -51.93 -0.32 0.55 16 44 H 0.37 3.32 9.12 45.56 0.42 3.73 16 LS Contribution 350.73 15.07 5.29 5.29 Total: -1.00 -33.34 350.73 -7.43 -40.77 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.54 Total: 7.36 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -0.44 Total: -9.35 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.28 Total: -53.03 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.43 Total: -7.88 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.34 -7.43 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602881207.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.358 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds