Wall clock time and date at job start Tue Mar 31 2020 05:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36884 * 126.39797 * 2 1 4 4 C 1.34668 * 106.81585 * 180.25547 * 3 2 1 5 5 N 1.34125 * 108.02060 * 359.74832 * 4 3 2 6 6 C 1.30497 * 109.25903 * 359.97438 * 5 4 3 7 7 C 1.50700 * 125.65261 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47222 * 165.02460 * 7 6 5 9 9 N 1.46903 * 109.47118 * 45.02154 * 7 6 5 10 10 C 1.46898 * 110.99969 * 135.97908 * 9 7 6 11 11 C 1.52995 * 109.47270 * 179.50484 * 10 9 7 12 12 C 1.50701 * 109.47391 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99618 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00053 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00167 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99656 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46938 * 90.00528 * 16 14 12 18 18 H 1.48502 * 109.46867 * 209.99814 * 16 14 12 19 19 H 1.48496 * 109.47419 * 330.00258 * 16 14 12 20 20 C 1.53002 * 109.46912 * 285.02683 * 7 6 5 21 21 C 1.52998 * 109.47341 * 56.54673 * 20 7 6 22 22 C 1.53004 * 109.47002 * 176.55260 * 20 7 6 23 23 C 1.53005 * 109.46880 * 296.54801 * 20 7 6 24 24 O 1.42900 * 109.47134 * 294.94163 * 23 20 7 25 25 H 1.09005 * 109.46357 * 270.18036 * 1 2 3 26 26 H 1.08995 * 109.47082 * 30.17890 * 1 2 3 27 27 H 1.09002 * 109.47166 * 150.18914 * 1 2 3 28 28 H 1.08000 * 126.58798 * 359.97438 * 3 2 1 29 29 H 1.08001 * 125.98726 * 179.76240 * 4 3 2 30 30 H 1.00900 * 111.00058 * 259.93376 * 9 7 6 31 31 H 1.08996 * 109.47220 * 59.49732 * 10 9 7 32 32 H 1.09006 * 109.46725 * 299.50379 * 10 9 7 33 33 H 1.09002 * 109.46781 * 299.99946 * 11 10 9 34 34 H 1.09003 * 109.47036 * 60.00148 * 11 10 9 35 35 H 0.96998 * 119.99896 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.46802 * 60.00700 * 21 20 7 37 37 H 1.09003 * 109.47175 * 179.97438 * 21 20 7 38 38 H 1.08996 * 109.47279 * 300.00402 * 21 20 7 39 39 H 1.08995 * 109.47205 * 55.36600 * 22 20 7 40 40 H 1.09001 * 109.46717 * 175.37150 * 22 20 7 41 41 H 1.09003 * 109.46854 * 295.36233 * 22 20 7 42 42 H 1.09001 * 109.47156 * 54.93826 * 23 20 7 43 43 H 1.09003 * 109.46877 * 174.94091 * 23 20 7 44 44 H 0.96698 * 114.00005 * 185.06506 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 -0.0057 5 7 3.5095 -0.6903 -0.0036 6 6 2.2663 -1.0870 0.0039 7 6 1.8018 -2.5206 0.0091 8 1 0.7468 -2.5597 0.2804 9 7 2.5874 -3.2864 0.9861 10 6 1.7224 -4.1650 1.7846 11 6 2.5759 -4.9533 2.7800 12 6 1.6884 -5.8542 3.5997 13 1 0.6221 -5.8638 3.4274 14 6 2.2376 -6.6669 4.5686 15 7 3.5359 -6.6555 4.7779 16 14 1.1373 -7.7831 5.5850 17 1 1.0062 -9.0984 4.9083 18 1 1.7356 -7.9761 6.9304 19 1 -0.2044 -7.1621 5.7243 20 6 1.9929 -3.1237 -1.3840 21 6 3.4591 -2.9909 -1.8005 22 6 1.6021 -4.6027 -1.3575 23 6 1.1085 -2.3804 -2.3872 24 8 -0.2662 -2.6020 -2.0659 25 1 -0.3632 0.0032 1.0277 26 1 -0.3633 0.8883 -0.5166 27 1 -0.3633 -0.8917 -0.5109 28 1 1.9613 2.1345 -0.0004 29 1 4.4369 1.2611 -0.0110 30 1 3.3164 -3.8141 0.5299 31 1 1.2002 -4.8579 1.1249 32 1 0.9945 -3.5621 2.3277 33 1 3.3037 -5.5561 2.2369 34 1 3.0979 -4.2602 3.4398 35 1 3.9223 -7.2276 5.4593 36 1 4.0892 -3.5205 -1.0859 37 1 3.5953 -3.4210 -2.7928 38 1 3.7375 -1.9373 -1.8194 39 1 0.5837 -4.7027 -0.9821 40 1 1.6595 -5.0118 -2.3662 41 1 2.2849 -5.1473 -0.7052 42 1 1.3248 -1.3131 -2.3412 43 1 1.3106 -2.7492 -3.3928 44 1 -0.8854 -2.2243 -2.7054 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602881209.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:50 Heat of formation + Delta-G solvation = 8.068757 kcal Electronic energy + Delta-G solvation = -23438.656443 eV Core-core repulsion = 20199.057783 eV Total energy + Delta-G solvation = -3239.598660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.99138 -38.85602 -36.26631 -33.98036 -33.79156 -32.38461 -30.30779 -28.57813 -27.03574 -26.97956 -26.21203 -25.17224 -23.24933 -21.14775 -20.44490 -20.18646 -18.43798 -17.53410 -16.82710 -16.38335 -16.21712 -15.33307 -14.77908 -14.60512 -14.40260 -14.14333 -13.71460 -13.44353 -13.25247 -13.08731 -12.83512 -12.64571 -12.44910 -12.37577 -12.03905 -11.81194 -11.64245 -11.12385 -10.95042 -10.91193 -10.76893 -10.64664 -10.45462 -10.13359 -9.95449 -9.57100 -9.36458 -9.30417 -9.09528 -8.30193 -8.12711 -7.70236 -5.94050 -3.96563 2.22843 2.92096 3.35230 3.41230 3.42214 3.44759 4.04615 4.46529 4.61965 4.66704 4.73578 4.78628 4.96284 5.06816 5.10135 5.21907 5.30688 5.41718 5.42187 5.46134 5.53973 5.66326 5.72676 5.81965 5.94641 6.06867 6.13699 6.15118 6.37207 6.42391 6.47724 6.52343 6.58717 6.98012 7.04267 7.33600 7.41479 7.56838 7.79790 7.90192 8.04201 8.16608 8.44754 8.49510 9.10834 9.66793 11.17358 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019014 B = 0.004483 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.249407 B = 6244.420234 C = 6640.436766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.460 5.460 3 C -0.076 4.076 4 C -0.033 4.033 5 N -0.469 5.469 6 C 0.238 3.762 7 C 0.183 3.817 8 H 0.086 0.914 9 N -0.671 5.671 10 C 0.065 3.935 11 C 0.026 3.974 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.078 4.078 21 C -0.143 4.143 22 C -0.139 4.139 23 C 0.087 3.913 24 O -0.567 6.567 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.167 0.833 29 H 0.164 0.836 30 H 0.345 0.655 31 H 0.023 0.977 32 H 0.053 0.947 33 H 0.014 0.986 34 H 0.025 0.975 35 H 0.260 0.740 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.046 0.954 44 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.659 13.839 -16.949 22.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.143 5.143 3 C -0.208 4.208 4 C -0.181 4.181 5 N -0.186 5.186 6 C -0.026 4.026 7 C 0.070 3.930 8 H 0.104 0.896 9 N -0.304 5.304 10 C -0.063 4.063 11 C -0.011 4.011 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.080 4.080 21 C -0.200 4.200 22 C -0.197 4.197 23 C 0.009 3.991 24 O -0.372 6.372 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.184 0.816 29 H 0.181 0.819 30 H 0.167 0.833 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.705 13.439 -15.827 21.533 hybrid contribution -1.713 -0.193 -0.401 1.770 sum -7.418 13.246 -16.228 22.222 Atomic orbital electron populations 1.22149 0.77286 1.04759 1.03763 1.45306 1.07286 1.06641 1.55089 1.22550 0.91669 0.92211 1.14399 1.22311 0.96040 0.91829 1.07952 1.70287 1.18503 1.10823 1.19028 1.23359 0.85485 0.90471 1.03235 1.19714 0.97226 0.85259 0.90801 0.89614 1.60332 1.13997 1.31245 1.24807 1.22318 0.95625 0.93250 0.95117 1.19051 0.94825 0.94095 0.93147 1.21163 0.93725 1.22596 1.18380 0.92817 1.24992 0.94934 0.97177 0.97210 1.69979 1.10349 1.39393 1.33430 0.86611 0.80762 0.81044 0.79661 1.20722 1.21243 1.19947 1.21139 0.95824 0.96354 0.94715 1.21891 0.93600 1.03954 1.00583 1.21856 1.02516 0.93508 1.01793 1.22244 0.81364 0.98215 0.97298 1.86507 1.16221 1.81326 1.53125 0.90777 0.90235 0.88344 0.81583 0.81888 0.83314 0.95869 0.92801 0.96746 0.95674 0.93034 0.91155 0.93264 0.90661 0.91605 0.92734 0.91796 0.93970 0.93570 0.77957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 10.75 59.85 0.64 1.24 16 2 N -0.46 -5.98 3.06 -121.27 -0.37 -6.35 16 3 C -0.08 -0.93 11.58 -16.56 -0.19 -1.12 16 4 C -0.03 -0.46 11.87 -17.81 -0.21 -0.67 16 5 N -0.47 -7.95 9.35 -10.82 -0.10 -8.05 16 6 C 0.24 3.74 5.00 -155.42 -0.78 2.97 16 7 C 0.18 2.88 1.71 -68.86 -0.12 2.77 16 8 H 0.09 1.39 6.14 -51.93 -0.32 1.07 16 9 N -0.67 -12.85 6.02 -107.95 -0.65 -13.50 16 10 C 0.06 1.40 4.93 -3.83 -0.02 1.38 16 11 C 0.03 0.70 5.23 -27.88 -0.15 0.56 16 12 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 13 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.41 13.29 55.43 0.74 -26.68 16 16 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.08 -1.03 0.38 -154.50 -0.06 -1.09 16 21 C -0.14 -1.90 7.82 37.16 0.29 -1.61 16 22 C -0.14 -1.92 6.83 37.16 0.25 -1.67 16 23 C 0.09 0.93 5.64 37.16 0.21 1.14 16 24 O -0.57 -5.46 10.72 -35.23 -0.38 -5.84 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.10 0.92 5.46 -51.93 -0.28 0.63 16 28 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.35 6.55 5.54 -39.29 -0.22 6.33 16 31 H 0.02 0.48 6.26 -51.93 -0.33 0.16 16 32 H 0.05 1.19 8.12 -51.93 -0.42 0.77 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.07 1.03 6.45 -51.93 -0.33 0.69 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.08 5.99 -51.93 -0.31 0.77 16 39 H 0.06 0.97 7.37 -51.93 -0.38 0.59 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.98 6.48 -51.93 -0.34 0.65 16 42 H 0.04 0.47 7.09 -51.93 -0.37 0.10 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.37 1.87 9.12 45.56 0.42 2.28 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -34.12 342.78 -7.38 -41.50 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.23 Total: 6.61 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -0.53 Total: -9.81 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.39 Total: -54.58 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.38 Total: -5.84 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.12 -7.38 -41.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602881209.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.570 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds