Wall clock time and date at job start Tue Mar 31 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47391 * 2 1 4 4 C 1.53006 * 109.46858 * 240.00288 * 2 1 3 5 5 O 1.42904 * 109.47169 * 120.00743 * 2 1 3 6 6 C 1.42897 * 114.00072 * 59.99848 * 5 2 1 7 7 C 1.53002 * 109.47084 * 180.02562 * 6 5 2 8 8 C 1.52995 * 109.47181 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47181 * 180.02562 * 8 7 6 10 10 N 1.46499 * 109.47215 * 180.02562 * 9 8 7 11 11 C 1.35309 * 125.87027 * 124.97307 * 10 9 8 12 12 C 1.35353 * 106.17498 * 179.97438 * 11 10 9 13 13 C 1.50706 * 126.75076 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46793 * 124.99895 * 13 12 11 15 15 H 1.08001 * 119.99975 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99507 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00130 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99689 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47195 * 89.99842 * 18 16 14 20 20 H 1.48495 * 109.47416 * 209.99962 * 18 16 14 21 21 H 1.48503 * 109.47059 * 330.00183 * 18 16 14 22 22 N 1.33775 * 106.49785 * 359.97438 * 12 11 10 23 23 N 1.28637 * 108.88137 * 0.02562 * 22 12 11 24 24 H 1.09004 * 109.47111 * 299.99930 * 1 2 3 25 25 H 1.08996 * 109.47068 * 59.99116 * 1 2 3 26 26 H 1.09000 * 109.47498 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47135 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47736 * 300.00474 * 3 2 1 29 29 H 1.08998 * 109.46970 * 60.00673 * 3 2 1 30 30 H 1.09000 * 109.47233 * 300.00366 * 4 2 1 31 31 H 1.09003 * 109.47139 * 60.00426 * 4 2 1 32 32 H 1.09002 * 109.47340 * 180.02562 * 4 2 1 33 33 H 1.08992 * 109.47386 * 60.00017 * 6 5 2 34 34 H 1.09007 * 109.46886 * 299.99912 * 6 5 2 35 35 H 1.08997 * 109.46834 * 59.99445 * 7 6 5 36 36 H 1.09004 * 109.46658 * 300.00018 * 7 6 5 37 37 H 1.09001 * 109.46985 * 59.99547 * 8 7 6 38 38 H 1.09007 * 109.47030 * 299.99742 * 8 7 6 39 39 H 1.08997 * 109.46834 * 59.99681 * 9 8 7 40 40 H 1.09007 * 109.46928 * 299.99805 * 9 8 7 41 41 H 1.08002 * 126.91313 * 0.02562 * 11 10 9 42 42 H 1.08997 * 109.46870 * 244.99788 * 13 12 11 43 43 H 1.09004 * 109.46999 * 5.00398 * 13 12 11 44 44 H 0.97003 * 119.99723 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0063 -0.6738 1.1667 6 6 1.5846 -2.0357 1.2643 7 6 2.1495 -2.6539 2.5448 8 6 1.6975 -4.1118 2.6496 9 6 2.2619 -4.7299 3.9304 10 7 1.8296 -6.1261 4.0304 11 6 2.6411 -7.1986 4.1789 12 6 1.8301 -8.2812 4.2273 13 6 2.2538 -9.7190 4.3844 14 6 1.5429 -10.3257 5.5666 15 1 0.8531 -9.7300 6.1459 16 6 1.7733 -11.6414 5.9085 17 7 2.6137 -12.3666 5.2034 18 14 0.8917 -12.3938 7.3735 19 1 -0.3904 -12.9942 6.9248 20 1 1.7464 -13.4466 7.9784 21 1 0.6179 -11.3385 8.3818 22 7 0.5786 -7.8240 4.1082 23 7 0.6125 -6.5432 3.9932 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6768 1.9562 0.8900 30 1 1.6765 -1.7489 -1.2494 31 1 1.6766 -0.2073 -2.1393 32 1 3.1299 -0.7217 -1.2492 33 1 1.9490 -2.5916 0.4006 34 1 0.4957 -2.0778 1.2906 35 1 1.7847 -2.0978 3.4083 36 1 3.2384 -2.6116 2.5189 37 1 2.0620 -4.6682 1.7860 38 1 0.6086 -4.1537 2.6756 39 1 1.8971 -4.1734 4.7937 40 1 3.3508 -4.6881 3.9048 41 1 3.7190 -7.1921 4.2461 42 1 1.9972 -10.2740 3.4820 43 1 3.3309 -9.7648 4.5453 44 1 2.7755 -13.2924 5.4437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603244015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:46 Heat of formation + Delta-G solvation = 23.103574 kcal Electronic energy + Delta-G solvation = -21135.345607 eV Core-core repulsion = 17896.398906 eV Total energy + Delta-G solvation = -3238.946701 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.47935 -39.46676 -36.30448 -34.22134 -33.33194 -32.33481 -31.00846 -28.80031 -27.82774 -27.76899 -27.21086 -24.30025 -23.36060 -21.66236 -21.12697 -20.38678 -19.84603 -16.91312 -16.79602 -16.48603 -16.17334 -15.68172 -15.35307 -14.99881 -14.51416 -14.19449 -14.06323 -13.88205 -13.01900 -13.00497 -12.86392 -12.58403 -12.35099 -12.26001 -12.16758 -12.08012 -12.00339 -11.70593 -11.54280 -11.51784 -11.05996 -10.91009 -10.79779 -10.71671 -10.61586 -10.05703 -9.83240 -9.67897 -9.41040 -9.25657 -8.41933 -8.10390 -5.97291 -3.97642 2.25321 2.77541 3.29545 3.38351 3.42953 3.46345 3.54320 4.34610 4.40018 4.44497 4.53071 4.53820 4.60684 4.75638 4.84780 4.97837 5.07810 5.09852 5.12958 5.19593 5.24690 5.26953 5.34799 5.36927 5.40003 5.41306 5.48989 5.56287 5.65408 5.76850 5.83191 5.85459 5.90342 5.97311 6.11028 6.35960 6.93218 7.15598 7.22158 7.55031 7.64542 8.00636 8.39488 9.05820 9.33753 9.65021 11.13824 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.053309 B = 0.002190 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.111592 B =12780.733572 C =12861.509601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.378 6.378 6 C 0.057 3.943 7 C -0.113 4.113 8 C -0.130 4.130 9 C 0.124 3.876 10 N -0.305 5.305 11 C -0.083 4.083 12 C 0.034 3.966 13 C 0.092 3.908 14 C -0.502 4.502 15 H 0.059 0.941 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.275 1.275 22 N -0.263 5.263 23 N -0.110 5.110 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.181 0.819 42 H 0.039 0.961 43 H 0.036 0.964 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.918 26.954 -11.109 29.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.067 3.933 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.298 6.298 6 C -0.019 4.019 7 C -0.151 4.151 8 C -0.168 4.168 9 C 0.002 3.998 10 N -0.100 5.100 11 C -0.232 4.232 12 C -0.104 4.104 13 C 0.053 3.947 14 C -0.541 4.541 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.200 1.200 22 N -0.130 5.130 23 N -0.088 5.088 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.198 0.802 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.636 27.297 -11.105 29.476 hybrid contribution 0.626 -0.799 0.684 1.224 sum 1.262 26.498 -10.422 28.502 Atomic orbital electron populations 1.22442 0.95702 1.02737 1.02848 1.21484 0.93166 0.93167 0.85437 1.21755 1.01946 0.93317 1.02454 1.22444 1.02230 1.01165 0.97874 1.87938 1.74608 1.24140 1.43114 1.22503 0.98781 0.82717 0.97918 1.21397 1.01829 0.94196 0.97724 1.21764 1.02958 0.95019 0.97070 1.21868 1.00851 0.77205 0.99926 1.47182 1.05941 1.08043 1.48874 1.23385 0.99144 0.86550 1.14082 1.23030 0.88197 0.99259 0.99882 1.17728 0.96812 0.81967 0.98180 1.21049 1.24864 0.96127 1.12071 0.92302 1.24979 0.95401 0.97078 0.97035 1.69946 1.35567 1.08493 1.39819 0.86504 0.79545 0.78799 0.82645 1.20562 1.21308 1.19955 1.75073 1.22052 0.99502 1.16348 1.78149 1.01766 1.08047 1.20868 0.91655 0.91528 0.92021 0.91809 0.91179 0.91802 0.92060 0.91514 0.91682 0.92966 0.92837 0.90624 0.90755 0.90886 0.89832 0.88906 0.88135 0.80175 0.94335 0.94554 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 8.25 37.16 0.31 -0.86 16 2 C 0.11 0.77 1.14 -90.62 -0.10 0.67 16 3 C -0.14 -0.83 8.84 37.16 0.33 -0.50 16 4 C -0.18 -1.16 8.25 37.16 0.31 -0.85 16 5 O -0.38 -3.49 9.99 -35.23 -0.35 -3.84 16 6 C 0.06 0.47 5.14 37.16 0.19 0.66 16 7 C -0.11 -0.87 5.58 -26.73 -0.15 -1.02 16 8 C -0.13 -1.22 5.34 -26.73 -0.14 -1.36 16 9 C 0.12 1.31 6.46 -4.04 -0.03 1.28 16 10 N -0.30 -5.07 3.44 -61.26 -0.21 -5.28 16 11 C -0.08 -1.53 11.49 -17.05 -0.20 -1.72 16 12 C 0.03 0.78 6.44 -82.77 -0.53 0.25 16 13 C 0.09 2.43 5.55 -29.03 -0.16 2.27 16 14 C -0.50 -14.67 9.09 -34.44 -0.31 -14.98 16 15 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 18 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 22 N -0.26 -6.36 12.40 33.29 0.41 -5.94 16 23 N -0.11 -2.25 12.92 60.35 0.78 -1.47 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.42 6.54 -51.93 -0.34 0.08 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.41 6.54 -51.93 -0.34 0.07 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.41 6.42 -51.93 -0.33 0.08 16 34 H 0.05 0.43 6.42 -51.93 -0.33 0.10 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.90 8.12 -51.93 -0.42 0.47 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.10 0.79 8.07 -51.93 -0.42 0.38 16 41 H 0.18 2.62 8.06 -52.49 -0.42 2.19 16 42 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.04 0.95 8.12 -51.93 -0.42 0.53 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 361.95 15.07 5.45 5.45 Total: -1.00 -33.90 361.95 -6.43 -40.34 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -7.65 Total: -5.81 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -0.59 Total: -14.65 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 1.72 Total: -38.79 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: -0.35 Total: -3.84 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.90 -6.43 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603244015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.442 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds