Wall clock time and date at job start Tue Mar 31 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53006 * 109.47127 * 300.00449 * 3 2 1 5 5 C 1.52999 * 109.47317 * 59.99960 * 3 2 1 6 6 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 7 7 N 1.29043 * 125.11645 * 59.69679 * 6 3 2 8 8 N 1.40288 * 108.09925 * 179.91436 * 7 6 3 9 9 H 0.97005 * 126.76969 * 180.11236 * 8 7 6 10 10 C 1.37010 * 106.45431 * 0.34218 * 8 7 6 11 11 N 1.30685 * 126.58175 * 179.83152 * 10 8 7 12 12 C 1.46491 * 120.00436 * 359.95899 * 11 10 8 13 13 C 1.53010 * 109.47106 * 119.99701 * 12 11 10 14 14 C 1.52996 * 109.47316 * 300.00247 * 13 12 11 15 15 C 1.53002 * 109.46711 * 60.00664 * 13 12 11 16 16 C 1.50704 * 109.47063 * 180.02562 * 13 12 11 17 17 H 1.08004 * 119.99654 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99652 * 180.02562 * 16 13 12 19 19 N 1.31512 * 120.00246 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99539 * 180.02562 * 18 16 13 21 21 H 1.48495 * 109.47142 * 89.99810 * 20 18 16 22 22 H 1.48498 * 109.47020 * 209.99898 * 20 18 16 23 23 H 1.48501 * 109.47351 * 329.99508 * 20 18 16 24 24 O 1.34845 * 125.12274 * 240.00249 * 6 3 2 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 1.08993 * 109.46955 * 60.00011 * 4 3 2 31 31 H 1.09000 * 109.47050 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47002 * 299.99574 * 4 3 2 33 33 H 1.09002 * 109.46716 * 60.00091 * 5 3 2 34 34 H 1.09000 * 109.47486 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.47362 * 300.00732 * 5 3 2 36 36 H 1.08994 * 109.47842 * 240.00467 * 12 11 10 37 37 H 1.09000 * 109.47121 * 0.02562 * 12 11 10 38 38 H 1.09006 * 109.46519 * 59.99810 * 14 13 12 39 39 H 1.08992 * 109.47138 * 179.97438 * 14 13 12 40 40 H 1.08996 * 109.47660 * 300.00286 * 14 13 12 41 41 H 1.09001 * 109.47468 * 59.99808 * 15 13 12 42 42 H 1.09002 * 109.46615 * 179.97438 * 15 13 12 43 43 H 1.09008 * 109.46832 * 299.99746 * 15 13 12 44 44 H 0.96997 * 119.99659 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1638 -1.2492 5 6 1.5300 2.1638 1.2492 6 6 3.5469 1.4426 -0.0006 7 7 4.2889 0.9102 -0.9124 8 7 5.6305 1.1191 -0.5594 9 1 6.4130 0.8318 -1.0556 10 6 5.6175 1.8044 0.6269 11 7 6.6595 2.1993 1.3097 12 6 8.0092 1.9140 0.8170 13 6 8.7596 3.2289 0.5951 14 6 8.0096 4.0768 -0.4341 15 6 8.8504 3.9935 1.9172 16 6 10.1480 2.9355 0.0876 17 1 10.4634 1.9134 -0.0621 18 6 11.0154 3.9718 -0.1856 19 7 10.6311 5.2163 -0.0037 20 14 12.7360 3.6081 -0.8153 21 1 12.7200 3.5595 -2.2994 22 1 13.6640 4.6763 -0.3649 23 1 13.1920 2.2992 -0.2821 24 8 4.3231 1.9939 0.9543 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 0.4399 2.1638 -1.2491 31 1 1.8928 3.1916 -1.2490 32 1 1.8932 1.6500 -2.1393 33 1 1.8934 1.6499 2.1392 34 1 1.8929 3.1916 1.2490 35 1 0.4400 2.1637 1.2493 36 1 8.5436 1.3099 1.5501 37 1 7.9446 1.3696 -0.1251 38 1 7.0052 4.2890 -0.0673 39 1 8.5439 5.0136 -0.5918 40 1 7.9448 3.5320 -1.3760 41 1 9.3848 3.3894 2.6504 42 1 9.3854 4.9300 1.7592 43 1 7.8461 4.2058 2.2839 44 1 11.2416 5.9453 -0.1955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603391610.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:59 Heat of formation + Delta-G solvation = 40.928583 kcal Electronic energy + Delta-G solvation = -22782.457924 eV Core-core repulsion = 19544.284173 eV Total energy + Delta-G solvation = -3238.173751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.70937 -38.10304 -36.67561 -35.15609 -33.78839 -31.34248 -30.56066 -29.18413 -27.62574 -25.68237 -25.44336 -25.00397 -24.96457 -22.81488 -21.39948 -19.68904 -18.49392 -17.92220 -16.75833 -15.93363 -15.88211 -15.05499 -15.01834 -14.74424 -14.68896 -14.35513 -13.44370 -13.20808 -12.92082 -12.70526 -12.50178 -12.23550 -12.15240 -11.98192 -11.80666 -11.55685 -11.52160 -11.42480 -11.16148 -11.13278 -10.90314 -10.79802 -10.64133 -10.46489 -10.19743 -10.09404 -9.44228 -9.35354 -8.99885 -8.49561 -8.28960 -7.48419 -5.92439 -4.04401 1.82631 2.32120 2.80239 2.81600 3.30177 3.37328 3.40169 4.17594 4.39480 4.44305 4.47988 4.72244 4.95328 5.07593 5.24920 5.30756 5.32527 5.39933 5.47557 5.58137 5.65154 5.65560 5.71087 5.78651 5.83654 5.95965 6.05206 6.09135 6.21088 6.47349 6.63074 6.87487 7.00115 7.14189 7.20233 7.42911 7.52549 7.74808 7.78618 7.94836 8.16590 8.30273 8.45942 8.56731 8.97023 9.60721 11.07884 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040169 B = 0.003438 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.891059 B = 8141.388486 C = 8267.145050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C 0.034 3.966 4 C -0.144 4.144 5 C -0.149 4.149 6 C 0.236 3.764 7 N -0.271 5.271 8 N -0.594 5.594 9 H 0.453 0.547 10 C 0.477 3.523 11 N -0.538 5.538 12 C 0.088 3.912 13 C 0.075 3.925 14 C -0.126 4.126 15 C -0.121 4.121 16 C -0.511 4.511 17 H 0.053 0.947 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.891 3.109 21 H -0.282 1.282 22 H -0.286 1.286 23 H -0.275 1.275 24 O -0.241 6.241 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.018 0.982 38 H 0.009 0.991 39 H 0.083 0.917 40 H 0.014 0.986 41 H 0.020 0.980 42 H 0.076 0.924 43 H 0.021 0.979 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.427 -8.067 -1.060 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C 0.032 3.968 4 C -0.202 4.202 5 C -0.206 4.206 6 C 0.007 3.993 7 N -0.098 5.098 8 N -0.345 5.345 9 H 0.303 0.697 10 C 0.164 3.836 11 N -0.283 5.283 12 C -0.040 4.040 13 C 0.074 3.926 14 C -0.184 4.184 15 C -0.179 4.179 16 C -0.550 4.550 17 H 0.071 0.929 18 C -0.135 4.135 19 N -0.521 5.521 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.212 1.212 23 H -0.200 1.200 24 O -0.128 6.128 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.036 0.964 38 H 0.028 0.972 39 H 0.101 0.899 40 H 0.033 0.967 41 H 0.039 0.961 42 H 0.095 0.905 43 H 0.040 0.960 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.155 -7.813 -0.952 21.637 hybrid contribution 1.769 -0.386 -0.795 1.978 sum -18.386 -8.199 -1.748 20.207 Atomic orbital electron populations 1.21895 0.94533 1.02201 1.02488 1.21637 0.96668 0.93292 1.03472 1.19257 0.80278 0.98367 0.98899 1.22005 1.01831 1.00673 0.95674 1.21958 1.01709 1.01168 0.95790 1.26303 0.95909 0.93041 0.84093 1.76504 0.89874 1.21282 1.22128 1.47526 1.03934 1.59165 1.23839 0.69732 1.22206 0.85377 0.91911 0.84092 1.72636 0.97148 1.28558 1.29945 1.22209 0.84919 1.00594 0.96267 1.18127 0.92470 0.88702 0.93312 1.21761 0.96733 1.02900 0.96987 1.21651 0.98004 1.01990 0.96228 1.21088 0.97168 0.92704 1.44004 0.92854 1.24887 0.98165 0.95073 0.95363 1.69845 1.35409 0.98306 1.48562 0.86623 0.84549 0.77989 0.78967 1.20843 1.21214 1.19988 1.84855 1.14048 1.69253 1.44672 0.91965 0.92257 0.91982 0.91261 0.90571 0.90412 0.91774 0.91222 0.91450 0.91349 0.90675 0.90981 0.96367 0.97197 0.89855 0.96704 0.96091 0.90517 0.96000 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.21 37.16 0.34 -0.49 16 2 C -0.11 -0.87 4.97 -26.73 -0.13 -1.00 16 3 C 0.03 0.32 0.77 -155.66 -0.12 0.20 16 4 C -0.14 -1.15 8.10 37.16 0.30 -0.85 16 5 C -0.15 -1.23 7.64 37.16 0.28 -0.95 16 6 C 0.24 3.27 6.48 -13.45 -0.09 3.18 16 7 N -0.27 -4.07 12.62 32.45 0.41 -3.66 16 8 N -0.59 -10.03 7.26 29.59 0.21 -9.81 16 9 H 0.45 7.17 7.41 -182.45 -1.35 5.82 16 10 C 0.48 9.13 9.06 -88.40 -0.80 8.33 16 11 N -0.54 -11.64 9.11 -62.54 -0.57 -12.21 16 12 C 0.09 1.97 5.22 -4.04 -0.02 1.95 16 13 C 0.07 1.90 0.57 -155.65 -0.09 1.82 16 14 C -0.13 -3.22 8.09 37.16 0.30 -2.92 16 15 C -0.12 -3.13 8.09 37.16 0.30 -2.83 16 16 C -0.51 -13.97 8.01 -34.44 -0.28 -14.25 16 17 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 18 C 0.07 1.83 5.15 -17.82 -0.09 1.73 16 19 N -0.88 -24.95 9.35 55.43 0.52 -24.43 16 20 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 O -0.24 -4.12 10.11 2.67 0.03 -4.09 16 25 H 0.06 0.30 6.43 -51.93 -0.33 -0.04 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.30 6.43 -51.93 -0.33 -0.03 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.43 6.43 -51.93 -0.33 0.10 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.43 6.43 -51.93 -0.33 0.10 16 36 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.02 0.38 6.18 -51.93 -0.32 0.05 16 38 H 0.01 0.23 7.60 -51.93 -0.39 -0.17 16 39 H 0.08 2.31 6.07 -51.93 -0.32 2.00 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 43 H 0.02 0.54 7.60 -51.92 -0.39 0.14 16 44 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -30.54 344.79 -7.51 -38.05 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -8.20 Total: 0.82 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.09 Total: -6.09 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.57 Total: -50.11 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: 0.03 Total: -4.09 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.54 -7.51 -38.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603391610.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.978 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds