Wall clock time and date at job start Tue Mar 31 2020 05:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46733 * 2 1 4 4 N 1.46500 * 109.47176 * 240.00191 * 2 1 3 5 5 C 1.34774 * 120.00381 * 85.00099 * 4 2 1 6 6 O 1.21587 * 119.99876 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99936 * 179.97438 * 5 4 2 8 8 C 1.46503 * 119.99783 * 179.97438 * 7 5 4 9 9 C 1.53041 * 109.46475 * 275.03133 * 8 7 5 10 10 C 1.53188 * 109.31610 * 178.60139 * 9 8 7 11 11 N 1.46925 * 108.76260 * 54.65261 * 10 9 8 12 12 C 1.36935 * 120.62952 * 126.41067 * 11 10 9 13 13 H 1.08006 * 120.00164 * 331.81736 * 12 11 10 14 14 C 1.38818 * 120.00182 * 151.82506 * 12 11 10 15 15 N 1.31614 * 120.00090 * 343.06802 * 14 12 11 16 16 Si 1.86803 * 120.00043 * 163.07180 * 14 12 11 17 17 H 1.48502 * 109.47260 * 89.99597 * 16 14 12 18 18 H 1.48493 * 109.47129 * 209.99637 * 16 14 12 19 19 H 1.48500 * 109.46939 * 329.99717 * 16 14 12 20 20 C 1.46927 * 118.73928 * 306.38027 * 11 10 9 21 21 C 1.53036 * 109.46136 * 154.97281 * 8 7 5 22 22 C 1.52995 * 109.46788 * 119.99911 * 2 1 3 23 23 C 1.53004 * 117.50058 * 299.99986 * 22 2 1 24 24 C 1.52998 * 60.03062 * 107.48131 * 23 22 2 25 25 H 1.09003 * 109.47036 * 59.99775 * 1 2 3 26 26 H 1.08995 * 109.47374 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47114 * 300.00047 * 1 2 3 28 28 H 0.97001 * 119.99386 * 265.00505 * 4 2 1 29 29 H 0.96998 * 120.00302 * 0.02562 * 7 5 4 30 30 H 1.09005 * 109.46146 * 35.00083 * 8 7 5 31 31 H 1.09005 * 109.49355 * 298.56646 * 9 8 7 32 32 H 1.09002 * 109.50009 * 58.65801 * 9 8 7 33 33 H 1.08998 * 109.59765 * 294.86503 * 10 9 8 34 34 H 1.08999 * 109.70213 * 174.50414 * 10 9 8 35 35 H 0.96994 * 120.00322 * 180.02562 * 15 14 12 36 36 H 1.08990 * 109.58942 * 293.82169 * 20 11 10 37 37 H 1.09005 * 109.70270 * 173.46947 * 20 11 10 38 38 H 1.09004 * 109.50027 * 301.34236 * 21 8 7 39 39 H 1.09004 * 109.49806 * 61.40075 * 21 8 7 40 40 H 1.09007 * 115.55902 * 154.31229 * 22 2 1 41 41 H 1.09003 * 117.49706 * 214.98384 * 23 22 2 42 42 H 1.08994 * 117.49589 * 359.97438 * 23 22 2 43 43 H 1.08998 * 117.49771 * 107.50310 * 24 23 22 44 44 H 1.09002 * 117.49896 * 252.52632 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1472 -0.0183 -2.3571 6 8 1.8576 1.1614 -2.4119 7 7 2.5969 -0.6535 -3.4574 8 6 2.7363 0.0772 -4.7195 9 6 1.3933 0.0887 -5.4532 10 6 1.5341 0.8832 -6.7554 11 7 2.6431 0.3183 -7.5361 12 6 2.4550 -0.0692 -8.8359 13 1 1.4803 -0.3972 -9.1660 14 6 3.5170 -0.0408 -9.7294 15 7 4.5979 0.6542 -9.4450 16 14 3.4120 -0.9888 -11.3356 17 1 2.8275 -0.1181 -12.3870 18 1 4.7729 -1.4169 -11.7475 19 1 2.5520 -2.1850 -11.1490 20 6 3.9581 0.1777 -6.8959 21 6 3.7900 -0.6087 -5.5920 22 6 2.0399 -0.7212 1.2492 23 6 1.6356 -0.1495 2.6096 24 6 1.0097 -1.4540 2.1123 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 2.2490 -1.6318 -1.1526 29 1 2.8276 -1.5947 -3.4138 30 1 3.0463 1.1018 -4.5136 31 1 1.0948 -0.9345 -5.6815 32 1 0.6377 0.5562 -4.8218 33 1 1.7439 1.9278 -6.5254 34 1 0.6103 0.8139 -7.3298 35 1 5.3398 0.6744 -10.0694 36 1 4.3656 1.1647 -6.6775 37 1 4.6353 -0.3581 -7.5611 38 1 4.7407 -0.6375 -5.0595 39 1 3.4690 -1.6254 -5.8186 40 1 3.0322 -1.1644 1.1643 41 1 2.3619 -0.2165 3.4197 42 1 1.0067 0.7407 2.6145 43 1 1.3241 -2.3792 2.5951 44 1 -0.0310 -1.4219 1.7896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609338142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:26 Heat of formation + Delta-G solvation = 10.263127 kcal Electronic energy + Delta-G solvation = -22402.710947 eV Core-core repulsion = 19163.207442 eV Total energy + Delta-G solvation = -3239.503505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.12236 -38.48936 -37.25224 -34.42264 -34.12553 -32.09360 -30.35231 -29.80261 -28.88154 -25.36711 -24.55378 -22.76233 -22.24962 -21.93115 -20.47528 -20.02929 -19.37708 -18.02837 -16.97145 -16.51989 -15.72210 -15.23302 -14.89155 -14.58262 -14.48093 -13.98914 -13.67929 -13.51649 -13.32642 -12.92310 -12.64999 -12.33477 -12.22674 -12.15646 -11.66733 -11.41846 -11.21876 -11.09245 -10.83963 -10.78914 -10.68734 -10.48924 -10.37748 -10.23861 -10.00389 -9.93933 -9.71093 -9.49452 -9.11038 -8.55625 -8.40395 -6.65469 -5.77568 -3.19381 2.79095 3.38406 3.42379 3.45349 3.47665 3.49564 4.32579 4.37868 4.51298 4.58279 4.68032 4.84439 5.12969 5.24093 5.34653 5.37299 5.45325 5.51721 5.54636 5.56771 5.65793 5.75701 5.78052 5.87041 5.94842 6.10974 6.12745 6.33495 6.40982 6.54166 6.55850 6.62750 6.65848 6.84533 6.96934 7.03419 7.18274 7.35201 7.64883 7.81255 8.22281 8.46920 8.82945 9.23052 9.86467 10.43843 11.31468 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.050340 B = 0.002961 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.080282 B = 9452.845739 C = 9556.003649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.192 3.808 3 H 0.090 0.910 4 N -0.746 5.746 5 C 0.702 3.298 6 O -0.591 6.591 7 N -0.740 5.740 8 C 0.169 3.831 9 C -0.139 4.139 10 C 0.148 3.852 11 N -0.593 5.593 12 C -0.251 4.251 13 H 0.065 0.935 14 C 0.001 3.999 15 N -0.904 5.904 16 Si 0.902 3.098 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.280 1.280 20 C 0.175 3.825 21 C -0.146 4.146 22 C -0.166 4.166 23 C -0.171 4.171 24 C -0.183 4.183 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.393 0.607 29 H 0.390 0.610 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.020 0.980 34 H 0.055 0.945 35 H 0.254 0.746 36 H 0.021 0.979 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 -5.975 21.587 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.087 3.913 3 H 0.108 0.892 4 N -0.402 5.402 5 C 0.402 3.598 6 O -0.469 6.469 7 N -0.393 5.393 8 C 0.065 3.935 9 C -0.179 4.179 10 C 0.021 3.979 11 N -0.316 5.316 12 C -0.381 4.381 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.548 5.548 16 Si 0.732 3.268 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.205 1.205 20 C 0.048 3.952 21 C -0.186 4.186 22 C -0.184 4.184 23 C -0.208 4.208 24 C -0.220 4.220 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.226 0.774 29 H 0.223 0.777 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.127 0.873 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.670 -4.827 21.392 22.422 hybrid contribution 0.268 -1.439 -0.730 1.636 sum -4.403 -6.267 20.662 22.036 Atomic orbital electron populations 1.22316 0.95659 1.01990 1.02515 1.20163 0.93372 0.96521 0.81276 0.89158 1.45194 1.72507 1.13459 1.09020 1.16030 0.78349 0.85197 0.80240 1.90912 1.56997 1.14412 1.84616 1.45549 1.70553 1.13601 1.09601 1.20896 0.96129 0.96143 0.80329 1.22386 0.96376 1.01107 0.98064 1.20876 0.92324 0.94247 0.90493 1.44094 1.06019 1.71701 1.09761 1.19182 0.96595 1.36830 0.85475 0.91701 1.25053 0.97958 0.99094 0.97612 1.70021 1.07088 1.40896 1.36806 0.86308 0.76842 0.79988 0.83707 1.21396 1.21585 1.20532 1.20731 0.88387 0.96598 0.89450 1.22540 0.96579 1.00680 0.98798 1.22579 0.99844 1.04435 0.91589 1.22947 1.03721 0.97815 0.96324 1.23200 0.99154 0.96032 1.03608 0.91688 0.92250 0.91883 0.77363 0.77691 0.90113 0.92516 0.92741 0.96182 0.92638 0.93619 0.96112 0.89079 0.92813 0.92273 0.87338 0.88635 0.88445 0.88933 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 8.08 37.16 0.30 -1.30 16 2 C 0.19 1.95 2.97 -67.93 -0.20 1.75 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 4 N -0.75 -8.19 5.08 -58.68 -0.30 -8.49 16 5 C 0.70 10.72 8.50 -86.92 -0.74 9.98 16 6 O -0.59 -11.56 15.67 5.29 0.08 -11.48 16 7 N -0.74 -10.71 5.08 -58.63 -0.30 -11.01 16 8 C 0.17 3.03 2.42 -67.89 -0.16 2.87 16 9 C -0.14 -2.62 5.65 -26.61 -0.15 -2.77 16 10 C 0.15 3.25 6.52 -3.71 -0.02 3.23 16 11 N -0.59 -15.01 2.99 -172.32 -0.52 -15.53 16 12 C -0.25 -6.92 9.58 -15.06 -0.14 -7.07 16 13 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 14 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 15 N -0.90 -26.25 11.19 55.49 0.62 -25.62 16 16 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 21 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 22 C -0.17 -1.25 5.88 -90.58 -0.53 -1.79 16 23 C -0.17 -1.12 9.90 -26.73 -0.26 -1.38 16 24 C -0.18 -1.16 9.57 -26.69 -0.26 -1.42 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.51 6.98 -51.93 -0.36 0.15 16 27 H 0.06 0.51 7.07 -51.93 -0.37 0.14 16 28 H 0.39 3.24 8.62 -40.82 -0.35 2.89 16 29 H 0.39 4.51 8.62 -40.82 -0.35 4.15 16 30 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 35 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 2.39 6.07 -51.93 -0.31 2.08 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.63 7.61 -51.93 -0.40 0.23 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.65 5.85 -51.93 -0.30 0.35 16 LS Contribution 347.25 15.07 5.23 5.23 Total: -1.00 -31.86 347.25 -10.05 -41.91 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.42 Total: 5.07 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -2.43 Total: 3.31 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.49 Total: -60.65 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.48 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.86 -10.05 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609338142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.175 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds