Wall clock time and date at job start Tue Mar 31 2020 05:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47261 * 2 1 4 4 N 1.46496 * 109.47144 * 120.00421 * 2 1 3 5 5 C 1.34774 * 120.00211 * 274.99780 * 4 2 1 6 6 O 1.21586 * 119.99704 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00303 * 180.02562 * 5 4 2 8 8 C 1.46493 * 120.00256 * 180.02562 * 7 5 4 9 9 C 1.53349 * 109.42022 * 275.12556 * 8 7 5 10 10 C 1.53196 * 109.15353 * 178.67345 * 9 8 7 11 11 N 1.46928 * 108.89135 * 54.57497 * 10 9 8 12 12 C 1.36936 * 120.63013 * 126.29699 * 11 10 9 13 13 H 1.07999 * 120.00022 * 331.83633 * 12 11 10 14 14 C 1.38813 * 120.00005 * 151.82709 * 12 11 10 15 15 N 1.31618 * 120.00004 * 343.09585 * 14 12 11 16 16 Si 1.86806 * 119.99953 * 163.09475 * 14 12 11 17 17 H 1.48494 * 109.47083 * 60.00061 * 16 14 12 18 18 H 1.48500 * 109.46851 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47024 * 300.00112 * 16 14 12 20 20 C 1.46924 * 118.73859 * 306.32337 * 11 10 9 21 21 C 1.53044 * 109.46300 * 154.99736 * 8 7 5 22 22 C 1.53002 * 109.46953 * 240.00342 * 2 1 3 23 23 C 1.52998 * 117.49841 * 128.61993 * 22 2 1 24 24 C 1.52997 * 60.00321 * 252.51009 * 23 22 2 25 25 H 1.08994 * 109.47311 * 59.99462 * 1 2 3 26 26 H 1.08997 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46803 * 299.99402 * 1 2 3 28 28 H 0.97001 * 119.99959 * 95.00595 * 4 2 1 29 29 H 0.97003 * 119.99662 * 359.97438 * 7 5 4 30 30 H 1.09003 * 109.46113 * 35.02623 * 8 7 5 31 31 H 1.08998 * 109.68701 * 58.70834 * 9 8 7 32 32 H 1.09000 * 109.47234 * 298.50902 * 9 8 7 33 33 H 1.08996 * 109.58345 * 294.72319 * 10 9 8 34 34 H 1.08994 * 109.58644 * 174.43734 * 10 9 8 35 35 H 0.96996 * 119.99787 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.58664 * 173.39523 * 20 11 10 37 37 H 1.08996 * 109.58580 * 293.67452 * 20 11 10 38 38 H 1.08992 * 109.49619 * 61.43083 * 21 8 7 39 39 H 1.08999 * 109.52313 * 301.35096 * 21 8 7 40 40 H 1.08998 * 115.55275 * 274.32960 * 22 2 1 41 41 H 1.08997 * 117.49875 * 0.02562 * 23 22 2 42 42 H 1.08999 * 117.50364 * 145.02320 * 23 22 2 43 43 H 1.08999 * 117.50693 * 252.50952 * 24 23 22 44 44 H 1.09000 * 117.49944 * 107.48311 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8584 1.1614 2.4116 7 7 2.5969 -0.6537 3.4574 8 6 2.7363 0.0768 4.7194 9 6 4.0948 0.7876 4.7498 10 6 4.2204 1.5762 6.0571 11 7 3.9888 0.6652 7.1864 12 6 4.9051 0.5618 8.1987 13 1 5.9496 0.7548 8.0034 14 6 4.4915 0.2093 9.4760 15 7 3.2197 0.2972 9.8036 16 14 5.7398 -0.3900 10.7299 17 1 6.7560 0.6677 10.9611 18 1 5.0485 -0.7007 12.0069 19 1 6.4069 -1.6141 10.2181 20 6 2.7556 -0.1333 7.2085 21 6 2.6442 -0.9050 5.8898 22 6 2.0400 -0.7212 -1.2493 23 6 3.0741 0.0053 -2.1117 24 6 1.6357 -0.1494 -2.6097 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 2.2491 -1.6318 1.1524 29 1 2.8275 -1.5949 3.4137 30 1 1.9389 0.8155 4.8015 31 1 4.1706 1.4710 3.9040 32 1 4.8933 0.0478 4.6931 33 1 3.4793 2.3752 6.0744 34 1 5.2203 2.0035 6.1315 35 1 2.9307 0.0505 10.6960 36 1 2.7901 -0.8358 8.0411 37 1 1.8953 0.5262 7.3223 38 1 3.4561 -1.6289 5.8221 39 1 1.6878 -1.4266 5.8533 40 1 2.1267 -1.8044 -1.1644 41 1 3.3914 0.9968 -1.7889 42 1 3.8415 -0.5999 -2.5943 43 1 1.4566 -0.8563 -3.4198 44 1 1.0063 0.7406 -2.6145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609338143.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:28 Heat of formation + Delta-G solvation = 6.833072 kcal Electronic energy + Delta-G solvation = -22391.025233 eV Core-core repulsion = 19151.372990 eV Total energy + Delta-G solvation = -3239.652243 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.07922 -38.30307 -37.20750 -34.48222 -34.17627 -32.11847 -30.46599 -29.84760 -28.92153 -25.16615 -24.28648 -22.60081 -22.25309 -21.92111 -20.61805 -20.43587 -19.37412 -17.98429 -17.02598 -16.55762 -15.47296 -15.03810 -14.80847 -14.73350 -14.26619 -13.92606 -13.63096 -13.53960 -13.43413 -12.95650 -12.74328 -12.40453 -12.33649 -12.18906 -11.71593 -11.41823 -11.09866 -11.04639 -10.81790 -10.80113 -10.69574 -10.47779 -10.42138 -10.23590 -10.00562 -9.94309 -9.71059 -9.50216 -9.09563 -8.55347 -8.39967 -6.65523 -5.77286 -3.19351 2.80222 3.39600 3.40492 3.45238 3.46463 3.51925 4.29249 4.38282 4.51429 4.59387 4.69655 4.92763 5.16511 5.29452 5.31920 5.37012 5.44704 5.49998 5.55198 5.58105 5.65747 5.72568 5.80138 5.91476 5.95064 6.11439 6.12983 6.33655 6.41172 6.54250 6.56449 6.62987 6.65824 6.84632 6.96988 7.03606 7.18079 7.35429 7.64986 7.81184 8.22243 8.47234 8.83168 9.23268 9.86592 10.43989 11.31699 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.045290 B = 0.003023 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.091846 B = 9260.317614 C = 9428.234556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.192 3.808 3 H 0.087 0.913 4 N -0.746 5.746 5 C 0.702 3.298 6 O -0.592 6.592 7 N -0.740 5.740 8 C 0.169 3.831 9 C -0.139 4.139 10 C 0.147 3.853 11 N -0.593 5.593 12 C -0.252 4.252 13 H 0.065 0.935 14 C 0.002 3.998 15 N -0.904 5.904 16 Si 0.903 3.097 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.284 1.284 20 C 0.175 3.825 21 C -0.146 4.146 22 C -0.164 4.164 23 C -0.177 4.177 24 C -0.170 4.170 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.392 0.608 29 H 0.390 0.610 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.020 0.980 34 H 0.055 0.945 35 H 0.254 0.746 36 H 0.091 0.909 37 H 0.021 0.979 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.533 -5.442 -21.730 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.086 3.914 3 H 0.105 0.895 4 N -0.401 5.401 5 C 0.402 3.598 6 O -0.470 6.470 7 N -0.393 5.393 8 C 0.065 3.935 9 C -0.179 4.179 10 C 0.020 3.980 11 N -0.316 5.316 12 C -0.382 4.382 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.548 5.548 16 Si 0.733 3.267 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.211 1.211 20 C 0.048 3.952 21 C -0.186 4.186 22 C -0.182 4.182 23 C -0.214 4.214 24 C -0.208 4.208 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.226 0.774 29 H 0.223 0.777 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.109 0.891 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.125 0.875 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.875 -4.342 -21.469 22.244 hybrid contribution 0.824 -1.333 0.577 1.670 sum -3.051 -5.675 -20.892 21.863 Atomic orbital electron populations 1.22167 0.95307 1.02005 1.02450 1.20243 0.93528 0.96331 0.81250 0.89476 1.45193 1.72531 1.13439 1.08985 1.16016 0.78254 0.85196 0.80307 1.90910 1.57305 1.14319 1.84442 1.45547 1.70439 1.13548 1.09771 1.20957 0.98146 0.94060 0.80325 1.22442 0.96501 0.99669 0.99326 1.20875 0.98909 0.91614 0.86561 1.44084 1.21573 1.44187 1.21715 1.19156 0.88640 1.43003 0.87370 0.91713 1.25055 0.96099 1.01819 0.96715 1.70017 1.14339 1.50809 1.19656 0.86363 0.80709 0.79030 0.80619 1.20880 1.21653 1.21089 1.20738 0.87924 0.93831 0.92708 1.22534 1.00335 0.98429 0.97282 1.22486 1.04696 0.99396 0.91649 1.23059 0.92481 1.02280 1.03554 1.22939 0.98303 1.03302 0.96247 0.91855 0.92624 0.91800 0.77429 0.77700 0.90130 0.92695 0.92525 0.96175 0.92664 0.93566 0.89088 0.96077 0.92272 0.92801 0.87516 0.88485 0.88752 0.88601 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.32 37.16 0.35 -1.22 16 2 C 0.19 1.96 2.81 -67.93 -0.19 1.77 16 3 H 0.09 1.09 7.33 -51.93 -0.38 0.71 16 4 N -0.75 -8.22 5.08 -58.68 -0.30 -8.52 16 5 C 0.70 10.76 8.49 -86.92 -0.74 10.02 16 6 O -0.59 -11.59 15.67 5.29 0.08 -11.51 16 7 N -0.74 -10.74 5.08 -58.48 -0.30 -11.04 16 8 C 0.17 3.04 2.42 -67.73 -0.16 2.87 16 9 C -0.14 -2.63 5.68 -26.45 -0.15 -2.78 16 10 C 0.15 3.25 6.51 -3.71 -0.02 3.23 16 11 N -0.59 -15.02 2.99 -172.32 -0.52 -15.54 16 12 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 13 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 14 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 15 N -0.90 -26.26 11.20 55.49 0.62 -25.63 16 16 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 21 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 22 C -0.16 -1.24 5.35 -90.62 -0.48 -1.72 16 23 C -0.18 -1.30 10.18 -26.73 -0.27 -1.57 16 24 C -0.17 -1.11 9.74 -26.73 -0.26 -1.37 16 25 H 0.06 0.52 7.29 -51.93 -0.38 0.14 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.39 3.21 8.56 -40.82 -0.35 2.86 16 29 H 0.39 4.52 8.62 -40.82 -0.35 4.17 16 30 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.11 0.70 8.07 -51.93 -0.42 0.28 16 41 H 0.10 0.78 8.05 -51.93 -0.42 0.37 16 42 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.62 7.61 -51.93 -0.40 0.23 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -31.92 351.47 -10.06 -41.99 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.59 Total: 4.98 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -2.33 Total: 3.35 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.49 Total: -60.73 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.51 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.92 -10.06 -41.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609338143.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.819 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds