Wall clock time and date at job start Tue Mar 31 2020 05:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00289 * 2 1 4 4 H 1.48498 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46925 * 300.00339 * 3 2 1 6 6 H 1.48497 * 109.47136 * 60.00275 * 3 2 1 7 7 C 1.38814 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00276 * 163.06174 * 7 2 1 9 9 N 1.36943 * 119.99879 * 343.06515 * 7 2 1 10 10 C 1.46916 * 120.63142 * 331.85273 * 9 7 2 11 11 C 1.53195 * 108.77451 * 233.58474 * 10 9 7 12 12 C 1.53038 * 109.31162 * 305.36609 * 11 10 9 13 13 N 1.46505 * 109.45584 * 181.38302 * 12 11 10 14 14 C 1.34784 * 119.99434 * 154.97134 * 13 12 11 15 15 O 1.21583 * 120.00055 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99500 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99899 * 179.97438 * 16 14 13 18 18 C 1.52991 * 109.47328 * 180.02562 * 17 16 14 19 19 C 1.53778 * 113.61671 * 85.86195 * 18 17 16 20 20 C 1.54053 * 86.98578 * 140.01980 * 19 18 17 21 21 C 1.53776 * 87.07779 * 334.56919 * 20 19 18 22 22 C 1.53035 * 109.52841 * 61.37320 * 12 11 10 23 23 C 1.46930 * 120.62836 * 151.82731 * 9 7 2 24 24 H 0.97000 * 120.00057 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.58780 * 113.79882 * 10 9 7 26 26 H 1.09007 * 109.70535 * 353.44009 * 10 9 7 27 27 H 1.09002 * 109.49948 * 185.41092 * 11 10 9 28 28 H 1.09007 * 109.52403 * 65.33295 * 11 10 9 29 29 H 1.08996 * 109.45944 * 301.35024 * 12 11 10 30 30 H 0.96992 * 120.00738 * 334.97276 * 13 12 11 31 31 H 0.96996 * 119.99926 * 0.02562 * 16 14 13 32 32 H 1.09000 * 109.46915 * 60.00185 * 17 16 14 33 33 H 1.09002 * 109.46890 * 300.00676 * 17 16 14 34 34 H 1.09003 * 112.85052 * 314.66721 * 18 17 16 35 35 H 1.08994 * 113.61782 * 254.61348 * 19 18 17 36 36 H 1.09000 * 113.61441 * 25.52348 * 19 18 17 37 37 H 1.08999 * 113.62422 * 220.02109 * 20 19 18 38 38 H 1.09000 * 113.61256 * 89.11934 * 20 19 18 39 39 H 1.08992 * 113.62051 * 270.87606 * 21 20 19 40 40 H 1.09002 * 113.69046 * 139.98660 * 21 20 19 41 41 H 1.08997 * 109.50089 * 58.57459 * 22 12 11 42 42 H 1.08999 * 109.49687 * 178.67760 * 22 12 11 43 43 H 1.08995 * 109.58529 * 246.20063 * 23 9 7 44 44 H 1.09002 * 109.58396 * 6.48487 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0550 -1.2224 -0.2730 9 7 1.3699 -2.3626 0.3444 10 6 0.2260 -2.3409 1.2661 11 6 0.4974 -3.3208 2.4119 12 6 0.8119 -4.7020 1.8328 13 7 1.0396 -5.6496 2.9267 14 6 0.8356 -6.9673 2.7302 15 8 0.4631 -7.3696 1.6450 16 7 1.0455 -7.8391 3.7365 17 6 0.8232 -9.2713 3.5231 18 6 1.1310 -10.0330 4.8138 19 6 -0.0589 -10.1051 5.7852 20 6 0.3648 -11.5589 6.0680 21 6 1.0097 -11.5595 4.6721 22 6 2.0674 -4.6178 0.9618 23 6 1.8136 -3.6528 -0.2007 24 1 -0.4850 0.8400 0.0004 25 1 -0.6771 -2.6410 0.7347 26 1 0.0967 -1.3358 1.6678 27 1 -0.3831 -3.3861 3.0510 28 1 1.3470 -2.9699 2.9978 29 1 -0.0282 -5.0417 1.2271 30 1 1.3370 -5.3287 3.7923 31 1 1.3430 -7.5181 4.6021 32 1 1.4776 -9.6258 2.7268 33 1 -0.2162 -9.4396 3.2413 34 1 2.0599 -9.7106 5.2843 35 1 0.0400 -9.4446 6.6466 36 1 -1.0287 -10.0205 5.2948 37 1 -0.4745 -12.2482 6.1615 38 1 1.0841 -11.6537 6.8815 39 1 0.3318 -11.8718 3.8779 40 1 1.9709 -12.0722 4.6339 41 1 2.9022 -4.2543 1.5609 42 1 2.3044 -5.6064 0.5685 43 1 1.0400 -4.0600 -0.8516 44 1 2.7330 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609338291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:09 Heat of formation + Delta-G solvation = -0.339392 kcal Electronic energy + Delta-G solvation = -22141.661929 eV Core-core repulsion = 18901.698665 eV Total energy + Delta-G solvation = -3239.963265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.06510 -39.03934 -37.37786 -34.47796 -34.19025 -32.03769 -30.13714 -29.48961 -28.02850 -25.97028 -24.91852 -23.12505 -22.20521 -21.80293 -20.63462 -19.78836 -19.32103 -18.01019 -16.84940 -16.36934 -15.77934 -15.29092 -14.89916 -14.81924 -14.35070 -13.98430 -13.71039 -13.59291 -13.47193 -12.94903 -12.80591 -12.59219 -12.32499 -12.24260 -11.92374 -11.41712 -11.10242 -10.95219 -10.81591 -10.74288 -10.70949 -10.60568 -10.43769 -10.22460 -10.00452 -9.94742 -9.71110 -9.49461 -9.08975 -8.54838 -8.40119 -6.65663 -5.77510 -3.19515 2.86526 3.37939 3.44376 3.45897 3.48277 4.19024 4.25749 4.33724 4.46762 4.51256 4.56962 4.96044 5.15307 5.35403 5.37176 5.39640 5.45183 5.50002 5.54607 5.55209 5.62496 5.66272 5.72851 5.88505 5.94946 6.11201 6.12952 6.33670 6.41035 6.51578 6.54690 6.62635 6.66067 6.84724 6.96705 7.03577 7.17665 7.35297 7.64968 7.81746 8.22075 8.46907 8.83024 9.23076 9.86406 10.43732 11.31454 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.052110 B = 0.002767 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.199614 B =10118.440666 C =10255.556968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.740 5.740 14 C 0.700 3.300 15 O -0.592 6.592 16 N -0.751 5.751 17 C 0.150 3.850 18 C -0.125 4.125 19 C -0.137 4.137 20 C -0.143 4.143 21 C -0.131 4.131 22 C -0.139 4.139 23 C 0.147 3.853 24 H 0.253 0.747 25 H 0.021 0.979 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.390 0.610 31 H 0.393 0.607 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.020 0.980 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 -19.243 13.686 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.393 5.393 14 C 0.400 3.600 15 O -0.470 6.470 16 N -0.408 5.408 17 C 0.025 3.975 18 C -0.143 4.143 19 C -0.174 4.174 20 C -0.181 4.181 21 C -0.169 4.169 22 C -0.179 4.179 23 C 0.020 3.980 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.223 0.777 31 H 0.226 0.774 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.228 -19.463 12.625 23.231 hybrid contribution 0.715 1.156 0.886 1.623 sum 1.943 -18.307 13.511 22.836 Atomic orbital electron populations 1.70036 1.05245 1.25377 1.54144 1.25059 0.95299 0.98426 1.01003 0.86226 0.79358 0.83975 0.77248 1.20282 1.21744 1.21600 1.19238 0.92593 0.84746 1.41387 0.91617 1.44108 1.35820 1.01695 1.49978 1.20737 0.88918 0.97856 0.87693 1.22541 1.00443 0.94803 1.00795 1.20898 0.98306 0.87507 0.86819 1.45545 1.72774 1.04979 1.16037 1.16050 0.78564 0.81291 0.84108 1.90915 1.53610 1.78077 1.24444 1.45137 1.74662 1.06877 1.14097 1.21152 1.01292 0.78580 0.96470 1.22824 0.99498 0.96070 0.95956 1.23050 0.98268 0.96870 0.99251 1.22860 1.00691 0.97252 0.97280 1.22866 1.01433 0.94847 0.97779 1.22384 0.97272 0.99455 0.98825 1.20882 0.97865 0.86503 0.92709 0.93676 0.96100 0.89062 0.92812 0.92271 0.90124 0.77701 0.77390 0.91769 0.91726 0.88720 0.91449 0.89813 0.91373 0.90225 0.89686 0.91219 0.92503 0.92734 0.96163 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 11.19 55.49 0.62 -25.65 16 2 C 0.00 0.01 4.92 -17.43 -0.09 -0.07 16 3 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -15.04 2.99 -172.32 -0.52 -15.56 16 10 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 11 C -0.15 -2.72 5.55 -26.61 -0.15 -2.87 16 12 C 0.17 3.05 2.42 -67.89 -0.16 2.88 16 13 N -0.74 -10.83 5.08 -58.63 -0.30 -11.12 16 14 C 0.70 10.88 8.53 -86.91 -0.74 10.14 16 15 O -0.59 -11.87 16.01 5.29 0.08 -11.79 16 16 N -0.75 -8.28 5.56 -65.23 -0.36 -8.64 16 17 C 0.15 1.49 5.50 -4.05 -0.02 1.47 16 18 C -0.12 -0.86 3.75 -89.81 -0.34 -1.20 16 19 C -0.14 -0.89 7.65 -25.78 -0.20 -1.09 16 20 C -0.14 -0.82 8.09 -25.78 -0.21 -1.03 16 21 C -0.13 -0.82 7.64 -25.92 -0.20 -1.01 16 22 C -0.14 -2.64 5.65 -26.61 -0.15 -2.79 16 23 C 0.15 3.26 6.52 -3.71 -0.02 3.23 16 24 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.09 2.40 6.07 -51.92 -0.31 2.09 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.66 7.58 -51.93 -0.39 1.26 16 30 H 0.39 4.53 8.62 -40.82 -0.35 4.18 16 31 H 0.39 3.19 8.49 -40.82 -0.35 2.84 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.72 7.87 -51.93 -0.41 0.31 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.60 7.92 -51.93 -0.41 0.19 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 349.30 15.07 5.26 5.26 Total: -1.00 -32.25 349.30 -10.36 -42.61 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.68 Total: 3.48 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -2.44 Total: 4.76 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.56 Total: -60.97 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.25 -10.36 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609338291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.270 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds