Wall clock time and date at job start Tue Mar 31 2020 05:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00289 * 2 1 4 4 H 1.48498 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46925 * 300.00339 * 3 2 1 6 6 H 1.48497 * 109.47136 * 60.00275 * 3 2 1 7 7 C 1.38814 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00276 * 163.06174 * 7 2 1 9 9 N 1.36943 * 119.99879 * 343.06515 * 7 2 1 10 10 C 1.46916 * 120.63142 * 331.85273 * 9 7 2 11 11 C 1.53195 * 108.77451 * 233.58474 * 10 9 7 12 12 C 1.53038 * 109.31162 * 305.36609 * 11 10 9 13 13 N 1.46505 * 109.45584 * 181.38302 * 12 11 10 14 14 C 1.34784 * 119.99434 * 154.97134 * 13 12 11 15 15 O 1.21583 * 120.00055 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99500 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99899 * 179.97438 * 16 14 13 18 18 C 1.52991 * 109.47328 * 180.02562 * 17 16 14 19 19 C 1.53778 * 113.61671 * 85.86195 * 18 17 16 20 20 C 1.54053 * 86.98578 * 140.01980 * 19 18 17 21 21 C 1.53776 * 87.07779 * 334.56919 * 20 19 18 22 22 C 1.53035 * 109.52841 * 61.37320 * 12 11 10 23 23 C 1.46930 * 120.62836 * 151.82731 * 9 7 2 24 24 H 0.97000 * 120.00057 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.58780 * 113.79882 * 10 9 7 26 26 H 1.09007 * 109.70535 * 353.44009 * 10 9 7 27 27 H 1.09002 * 109.49948 * 185.41092 * 11 10 9 28 28 H 1.09007 * 109.52403 * 65.33295 * 11 10 9 29 29 H 1.08996 * 109.45944 * 301.35024 * 12 11 10 30 30 H 0.96992 * 120.00738 * 334.97276 * 13 12 11 31 31 H 0.96996 * 119.99926 * 0.02562 * 16 14 13 32 32 H 1.09000 * 109.46915 * 60.00185 * 17 16 14 33 33 H 1.09002 * 109.46890 * 300.00676 * 17 16 14 34 34 H 1.09003 * 112.85052 * 314.66721 * 18 17 16 35 35 H 1.08994 * 113.61782 * 254.61348 * 19 18 17 36 36 H 1.09000 * 113.61441 * 25.52348 * 19 18 17 37 37 H 1.08999 * 113.62422 * 220.02109 * 20 19 18 38 38 H 1.09000 * 113.61256 * 89.11934 * 20 19 18 39 39 H 1.08992 * 113.62051 * 270.87606 * 21 20 19 40 40 H 1.09002 * 113.69046 * 139.98660 * 21 20 19 41 41 H 1.08997 * 109.50089 * 58.57459 * 22 12 11 42 42 H 1.08999 * 109.49687 * 178.67760 * 22 12 11 43 43 H 1.08995 * 109.58529 * 246.20063 * 23 9 7 44 44 H 1.09002 * 109.58396 * 6.48487 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0550 -1.2224 -0.2730 9 7 1.3699 -2.3626 0.3444 10 6 0.2260 -2.3409 1.2661 11 6 0.4974 -3.3208 2.4119 12 6 0.8119 -4.7020 1.8328 13 7 1.0396 -5.6496 2.9267 14 6 0.8356 -6.9673 2.7302 15 8 0.4631 -7.3696 1.6450 16 7 1.0455 -7.8391 3.7365 17 6 0.8232 -9.2713 3.5231 18 6 1.1310 -10.0330 4.8138 19 6 -0.0589 -10.1051 5.7852 20 6 0.3648 -11.5589 6.0680 21 6 1.0097 -11.5595 4.6721 22 6 2.0674 -4.6178 0.9618 23 6 1.8136 -3.6528 -0.2007 24 1 -0.4850 0.8400 0.0004 25 1 -0.6771 -2.6410 0.7347 26 1 0.0967 -1.3358 1.6678 27 1 -0.3831 -3.3861 3.0510 28 1 1.3470 -2.9699 2.9978 29 1 -0.0282 -5.0417 1.2271 30 1 1.3370 -5.3287 3.7923 31 1 1.3430 -7.5181 4.6021 32 1 1.4776 -9.6258 2.7268 33 1 -0.2162 -9.4396 3.2413 34 1 2.0599 -9.7106 5.2843 35 1 0.0400 -9.4446 6.6466 36 1 -1.0287 -10.0205 5.2948 37 1 -0.4745 -12.2482 6.1615 38 1 1.0841 -11.6537 6.8815 39 1 0.3318 -11.8718 3.8779 40 1 1.9709 -12.0722 4.6339 41 1 2.9022 -4.2543 1.5609 42 1 2.3044 -5.6064 0.5685 43 1 1.0400 -4.0600 -0.8516 44 1 2.7330 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609338291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:08 Heat of formation + Delta-G solvation = -21.589243 kcal Electronic energy + Delta-G solvation = -22142.583392 eV Core-core repulsion = 18901.698665 eV Total energy + Delta-G solvation = -3240.884727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.23418 -39.79961 -38.95340 -36.01887 -35.38018 -33.84460 -31.81177 -31.20976 -28.99904 -26.79020 -26.44594 -24.19649 -23.84264 -23.23185 -21.85681 -21.06125 -20.36168 -19.27382 -18.59726 -17.55697 -16.86682 -16.57755 -16.33117 -15.84009 -15.64287 -15.37236 -15.28550 -14.83303 -14.75322 -14.68200 -14.11336 -14.03684 -13.30509 -13.20270 -13.01698 -12.84547 -12.63266 -12.58200 -12.50729 -12.21595 -11.98913 -11.86549 -11.55831 -11.51578 -11.42687 -11.31454 -11.13511 -11.04382 -10.56467 -10.28358 -9.69963 -8.70819 -7.87515 -5.33405 1.48071 1.49850 1.60862 1.74184 2.19717 2.52362 3.25365 3.33318 3.66672 3.70395 3.75227 3.85992 3.91676 4.01836 4.07821 4.34946 4.35476 4.46956 4.54670 4.65783 4.73909 4.82354 4.86509 4.90438 4.90876 4.99141 5.05148 5.07430 5.13050 5.14314 5.16711 5.30083 5.33152 5.47184 5.53172 5.61935 5.65250 5.66039 5.70804 6.07970 6.39451 7.14690 7.17193 7.64338 7.83980 8.37348 9.19877 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.052110 B = 0.002767 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.199614 B =10118.440666 C =10255.556968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.262 4.262 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.181 3.819 13 N -0.726 5.726 14 C 0.697 3.303 15 O -0.640 6.640 16 N -0.730 5.730 17 C 0.149 3.851 18 C -0.117 4.117 19 C -0.138 4.138 20 C -0.138 4.138 21 C -0.133 4.133 22 C -0.123 4.123 23 C 0.145 3.855 24 H 0.251 0.749 25 H -0.006 1.006 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.410 0.590 31 H 0.411 0.589 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.006 0.994 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.144 -20.028 15.983 25.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.213 1.213 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.166 4.166 12 C 0.075 3.925 13 N -0.381 5.381 14 C 0.396 3.604 15 O -0.522 6.522 16 N -0.387 5.387 17 C 0.025 3.975 18 C -0.135 4.135 19 C -0.176 4.176 20 C -0.176 4.176 21 C -0.171 4.171 22 C -0.163 4.163 23 C 0.018 3.982 24 H 0.060 0.940 25 H 0.012 0.988 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.246 0.754 31 H 0.248 0.752 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.024 0.976 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.716 -20.282 14.997 25.371 hybrid contribution 0.234 1.325 0.126 1.351 sum 2.950 -18.958 15.123 24.430 Atomic orbital electron populations 1.70193 1.06723 1.25905 1.55414 1.25839 0.96069 1.01592 1.01138 0.85171 0.78594 0.79647 0.76790 1.19060 1.22161 1.21346 1.19557 0.92875 0.85787 1.40994 0.91460 1.44365 1.35956 1.02204 1.50745 1.20568 0.87692 0.97762 0.88768 1.22251 1.01968 0.93530 0.98889 1.20482 0.96871 0.87776 0.87374 1.45122 1.72671 1.04320 1.15999 1.16225 0.78262 0.81666 0.84208 1.90892 1.55719 1.78861 1.26738 1.44970 1.73163 1.06730 1.13832 1.21234 1.00214 0.78037 0.98013 1.22816 1.00328 0.96018 0.94368 1.23049 0.97526 0.97745 0.99239 1.22856 1.00924 0.96642 0.97129 1.22898 1.01855 0.94241 0.98134 1.22174 0.97947 0.98421 0.97774 1.20966 0.97323 0.85986 0.93894 0.94002 0.98839 0.91747 0.90539 0.90997 0.92847 0.75400 0.75231 0.93044 0.93115 0.87278 0.90591 0.90793 0.91125 0.89130 0.90211 0.90449 0.91480 0.92533 0.97626 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.59 11.19 21.65 0.24 -55.34 16 2 C -0.05 -2.86 4.92 84.86 0.42 -2.44 16 3 Si 0.97 44.69 29.59 68.60 2.03 46.72 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.26 -14.51 9.58 84.03 0.81 -13.70 16 8 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 9 N -0.61 -31.23 2.99 -699.09 -2.09 -33.32 16 10 C 0.18 8.63 5.30 86.37 0.46 9.09 16 11 C -0.13 -4.56 5.55 30.67 0.17 -4.39 16 12 C 0.18 6.35 2.42 45.01 0.11 6.46 16 13 N -0.73 -19.70 5.08 -457.68 -2.33 -22.03 16 14 C 0.70 20.69 8.53 179.05 1.53 22.21 16 15 O -0.64 -25.63 16.01 -3.98 -0.06 -25.70 16 16 N -0.73 -14.60 5.56 -478.54 -2.66 -17.26 16 17 C 0.15 2.80 5.50 86.38 0.47 3.28 16 18 C -0.12 -1.35 3.75 -10.27 -0.04 -1.39 16 19 C -0.14 -1.49 7.65 31.21 0.24 -1.25 16 20 C -0.14 -1.25 8.09 31.21 0.25 -1.00 16 21 C -0.13 -1.41 7.64 31.12 0.24 -1.17 16 22 C -0.12 -4.55 5.65 30.67 0.17 -4.37 16 23 C 0.14 6.43 6.52 86.36 0.56 7.00 16 24 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 25 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H 0.06 3.46 6.07 -2.38 -0.01 3.45 16 27 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 29 H 0.05 2.21 7.58 -2.39 -0.02 2.20 16 30 H 0.41 8.11 8.62 -92.71 -0.80 7.31 16 31 H 0.41 5.34 8.49 -92.71 -0.79 4.56 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.11 7.87 -2.39 -0.02 1.09 16 34 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 0.96 7.92 -2.39 -0.02 0.94 16 37 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.93 8.10 -2.39 -0.02 0.91 16 40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 42 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 Total: -1.00 -70.81 349.30 -0.08 -70.90 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.60 Total: 17.71 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 5.39 Total: 18.32 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -6.84 Total: -127.95 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.06 Total: -25.70 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -70.81 -0.08 -70.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609338291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.308 kcal (2) G-P(sol) polarization free energy of solvation -70.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds