Wall clock time and date at job start Tue Mar 31 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.88647 * 2 1 4 4 C 1.55158 * 111.00149 * 236.11718 * 2 1 3 5 5 C 1.54321 * 102.94059 * 206.38617 * 4 2 1 6 6 N 1.47020 * 107.27230 * 22.19389 * 5 4 2 7 7 C 1.34774 * 125.65071 * 180.78950 * 6 5 4 8 8 O 1.21588 * 120.00119 * 180.02562 * 7 6 5 9 9 N 1.34781 * 120.00147 * 0.03188 * 7 6 5 10 10 C 1.46494 * 120.00250 * 179.97438 * 9 7 6 11 11 C 1.53046 * 109.46018 * 275.06295 * 10 9 7 12 12 C 1.53187 * 109.31522 * 178.61581 * 11 10 9 13 13 N 1.46926 * 108.77590 * 54.63390 * 12 11 10 14 14 C 1.36938 * 120.62901 * 126.41457 * 13 12 11 15 15 H 1.08008 * 119.99523 * 207.66640 * 14 13 12 16 16 C 1.38808 * 119.99940 * 27.66408 * 14 13 12 17 17 N 1.31615 * 120.00060 * 17.36550 * 16 14 13 18 18 Si 1.86805 * 119.99917 * 197.36760 * 16 14 13 19 19 H 1.48500 * 109.47100 * 59.99848 * 18 16 14 20 20 H 1.48493 * 109.46990 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.46809 * 300.00254 * 18 16 14 22 22 C 1.46925 * 118.73840 * 306.39689 * 13 12 11 23 23 C 1.53040 * 109.46236 * 154.99871 * 10 9 7 24 24 C 1.47428 * 108.70401 * 1.05987 * 6 5 4 25 25 H 1.08994 * 109.47363 * 183.88044 * 1 2 3 26 26 H 1.09005 * 109.47125 * 303.88040 * 1 2 3 27 27 H 1.09003 * 109.46838 * 63.88083 * 1 2 3 28 28 H 1.09005 * 110.71514 * 88.02527 * 4 2 1 29 29 H 1.08998 * 110.87670 * 324.82344 * 4 2 1 30 30 H 1.09002 * 109.88473 * 262.77637 * 5 4 2 31 31 H 1.09003 * 109.88022 * 141.61213 * 5 4 2 32 32 H 0.97005 * 119.99271 * 359.97438 * 9 7 6 33 33 H 1.08995 * 109.45982 * 35.02303 * 10 9 7 34 34 H 1.09003 * 109.49294 * 298.57185 * 11 10 9 35 35 H 1.09003 * 109.49161 * 58.66013 * 11 10 9 36 36 H 1.08997 * 109.58596 * 294.84970 * 12 11 10 37 37 H 1.08996 * 109.58647 * 174.42424 * 12 11 10 38 38 H 0.97006 * 120.00149 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.58559 * 293.81647 * 22 13 12 40 40 H 1.09006 * 109.70380 * 173.46755 * 22 13 12 41 41 H 1.09008 * 109.49364 * 301.33916 * 23 10 9 42 42 H 1.09001 * 109.49981 * 61.39122 * 23 10 9 43 43 H 1.09001 * 110.36589 * 94.70571 * 24 6 5 44 44 H 1.08994 * 110.36930 * 217.03141 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8075 -1.2025 5 6 3.4678 -1.2731 -0.6969 6 7 3.4280 -1.2422 0.7725 7 6 4.4476 -1.5646 1.5928 8 8 4.3009 -1.5025 2.7983 9 7 5.6298 -1.9555 1.0771 10 6 6.7382 -2.3054 1.9688 11 6 7.4954 -1.0353 2.3635 12 6 8.6322 -1.4007 3.3231 13 7 9.4693 -2.4312 2.6939 14 6 10.8220 -2.2543 2.5745 15 1 11.3605 -2.7348 1.7710 16 6 11.5008 -1.4574 3.4861 17 7 10.9420 -1.1529 4.6382 18 14 13.2075 -0.8172 3.0777 19 1 13.1428 0.0167 1.8506 20 1 13.7120 0.0030 4.2081 21 1 14.1245 -1.9628 2.8498 22 6 8.8276 -3.6554 2.1956 23 6 7.6886 -3.2647 1.2487 24 6 2.0861 -0.8065 1.2000 25 1 -0.3634 -1.0252 0.0695 26 1 -0.3633 0.5729 0.8532 27 1 -0.3633 0.4524 -0.9228 28 1 2.1915 -0.1693 -2.0799 29 1 1.4482 -1.6631 -1.4241 30 1 4.2425 -0.5983 -1.0610 31 1 3.6657 -2.2882 -1.0411 32 1 5.7467 -2.0052 0.1154 33 1 6.3457 -2.7870 2.8643 34 1 7.9093 -0.5663 1.4708 35 1 6.8124 -0.3427 2.8555 36 1 8.2153 -1.7864 4.2534 37 1 9.2348 -0.5161 3.5293 38 1 11.4165 -0.5964 5.2754 39 1 8.4266 -4.2250 3.0340 40 1 9.5579 -4.2608 1.6586 41 1 7.1431 -4.1591 0.9471 42 1 8.1003 -2.7750 0.3662 43 1 1.4532 -1.6706 1.4022 44 1 2.1567 -0.1720 2.0834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609339783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:31 Heat of formation + Delta-G solvation = -14.231990 kcal Electronic energy + Delta-G solvation = -22695.279223 eV Core-core repulsion = 19454.713530 eV Total energy + Delta-G solvation = -3240.565693 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.25949 -38.30776 -37.00450 -34.33817 -33.15582 -31.85637 -29.98761 -29.83628 -29.36545 -26.59901 -24.80908 -23.28660 -22.16743 -21.76182 -20.61161 -19.78407 -19.28279 -17.91369 -16.76866 -16.52488 -15.66273 -14.99802 -14.87250 -14.41101 -14.07735 -13.82873 -13.65998 -13.46031 -13.12646 -12.99978 -12.92369 -12.72943 -12.44253 -12.24840 -12.10348 -11.46058 -11.37671 -11.07803 -11.02854 -10.97356 -10.88481 -10.68928 -10.33874 -10.22083 -10.04653 -9.91590 -9.71015 -9.51324 -8.80756 -8.49800 -8.30858 -6.65296 -5.74917 -3.17537 2.71290 3.40573 3.41461 3.46531 3.47522 4.02720 4.30086 4.34359 4.51048 4.52380 4.90671 5.07236 5.10203 5.30062 5.33665 5.38003 5.42806 5.44617 5.50647 5.53433 5.63130 5.70319 5.75030 5.78980 5.89373 5.98119 6.13350 6.17211 6.28882 6.43684 6.51644 6.66731 6.69742 6.83762 6.96853 7.02864 7.20409 7.44229 7.73056 7.82586 8.15829 8.48535 8.82213 9.24461 9.88053 10.44886 11.33586 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036840 B = 0.003298 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.854839 B = 8487.980295 C = 8575.461099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.099 3.901 6 N -0.643 5.643 7 C 0.719 3.281 8 O -0.587 6.587 9 N -0.737 5.737 10 C 0.168 3.832 11 C -0.146 4.146 12 C 0.174 3.826 13 N -0.593 5.593 14 C -0.255 4.255 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.149 3.851 23 C -0.138 4.138 24 C 0.130 3.870 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.389 0.611 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.021 0.979 37 H 0.089 0.911 38 H 0.255 0.745 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.002 0.614 -13.348 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 H 0.103 0.897 4 C -0.163 4.163 5 C -0.024 4.024 6 N -0.383 5.383 7 C 0.421 3.579 8 O -0.464 6.464 9 N -0.390 5.390 10 C 0.064 3.936 11 C -0.187 4.187 12 C 0.048 3.952 13 N -0.315 5.315 14 C -0.384 4.384 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.209 1.209 22 C 0.022 3.978 23 C -0.178 4.178 24 C 0.006 3.994 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.222 0.778 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.107 0.893 38 H 0.065 0.935 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.917 0.712 -12.219 22.532 hybrid contribution 0.938 0.373 -0.733 1.247 sum -17.980 1.085 -12.952 22.186 Atomic orbital electron populations 1.21686 0.93683 1.02257 1.02153 1.22385 0.96167 0.99540 0.94609 0.89704 1.22680 0.95315 1.00278 0.98058 1.21959 0.98429 1.01015 0.81003 1.47601 1.12427 1.72433 1.05802 1.15528 0.79617 0.78165 0.84577 1.90932 1.82485 1.60530 1.12474 1.45530 1.11464 1.72151 1.09902 1.20919 0.84145 0.96139 0.92372 1.22579 0.98717 0.96309 1.01085 1.20761 0.89250 0.94046 0.91173 1.44106 1.03726 1.14225 1.69489 1.19135 0.83260 1.28637 1.07417 0.91693 1.25050 0.97804 1.02143 0.94648 1.70032 1.38378 1.39877 1.06235 0.86371 0.84249 0.78849 0.77288 1.21079 1.21647 1.20899 1.20827 0.92699 0.89832 0.94449 1.22340 0.97614 0.97784 1.00058 1.22092 0.82030 0.97827 0.97431 0.92292 0.92173 0.92144 0.90098 0.90472 0.91708 0.91783 0.77770 0.90092 0.92859 0.92849 0.96125 0.89277 0.93534 0.96179 0.92357 0.92712 0.91958 0.91892 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.31 37.16 0.35 -0.45 16 2 C -0.11 -0.80 3.64 -88.47 -0.32 -1.12 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.13 -0.81 6.42 -24.90 -0.16 -0.97 16 5 C 0.10 0.87 6.15 -3.07 -0.02 0.85 16 6 N -0.64 -8.18 3.33 -176.24 -0.59 -8.77 16 7 C 0.72 12.16 8.45 -86.92 -0.73 11.42 16 8 O -0.59 -12.50 16.26 5.29 0.09 -12.41 16 9 N -0.74 -11.46 5.04 -58.64 -0.30 -11.76 16 10 C 0.17 3.11 2.42 -67.89 -0.16 2.94 16 11 C -0.15 -3.07 5.65 -26.61 -0.15 -3.22 16 12 C 0.17 4.36 5.31 -3.71 -0.02 4.35 16 13 N -0.59 -15.11 3.00 -172.33 -0.52 -15.62 16 14 C -0.25 -7.06 9.59 -15.06 -0.14 -7.20 16 15 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 16 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 17 N -0.90 -26.72 11.19 55.49 0.62 -26.10 16 18 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.15 3.14 6.51 -3.72 -0.02 3.12 16 23 C -0.14 -2.38 5.55 -26.62 -0.15 -2.52 16 24 C 0.13 1.40 6.38 -2.53 -0.02 1.38 16 25 H 0.06 0.32 8.07 -51.93 -0.42 -0.10 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.44 8.04 -51.93 -0.42 0.02 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.39 4.92 7.59 -40.82 -0.31 4.61 16 33 H 0.08 1.69 7.58 -51.93 -0.39 1.30 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 2.48 6.04 -51.93 -0.31 2.17 16 38 H 0.25 7.30 8.31 -40.82 -0.34 6.97 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 41 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.65 7.99 -51.93 -0.41 0.23 16 44 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 LS Contribution 345.18 15.07 5.20 5.20 Total: -1.00 -33.02 345.18 -9.88 -42.90 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.72 Total: 1.15 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -1.64 Total: 8.55 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.78 Total: -62.25 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.02 -9.88 -42.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609339783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.667 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds