Wall clock time and date at job start Tue Mar 31 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 110.63841 * 2 1 4 4 C 1.55158 * 110.72257 * 123.14751 * 2 1 3 5 5 C 1.54912 * 101.58047 * 154.04589 * 4 2 1 6 6 N 1.47430 * 104.83066 * 322.98772 * 5 4 2 7 7 C 1.34781 * 125.64699 * 204.09704 * 6 5 4 8 8 O 1.21584 * 119.99998 * 180.02562 * 7 6 5 9 9 N 1.34775 * 119.99873 * 0.02562 * 7 6 5 10 10 C 1.46494 * 119.99936 * 180.02562 * 9 7 6 11 11 C 1.53035 * 109.46147 * 204.99652 * 10 9 7 12 12 C 1.53196 * 109.31423 * 178.61336 * 11 10 9 13 13 N 1.46927 * 108.77634 * 54.63571 * 12 11 10 14 14 C 1.36928 * 120.63088 * 126.36721 * 13 12 11 15 15 H 1.08007 * 120.00500 * 332.14013 * 14 13 12 16 16 C 1.38814 * 119.99963 * 152.13855 * 14 13 12 17 17 N 1.31619 * 119.99967 * 343.00388 * 16 14 13 18 18 Si 1.86804 * 119.99920 * 162.99959 * 16 14 13 19 19 H 1.48499 * 109.47455 * 266.23556 * 18 16 14 20 20 H 1.48503 * 109.47084 * 26.23946 * 18 16 14 21 21 H 1.48500 * 109.47032 * 146.23813 * 18 16 14 22 22 C 1.46923 * 118.73739 * 306.64523 * 13 12 11 23 23 C 1.52765 * 109.00780 * 53.30755 * 22 13 12 24 24 C 1.47020 * 108.70274 * 24.36045 * 6 5 4 25 25 H 1.09001 * 109.47059 * 296.85312 * 1 2 3 26 26 H 1.09001 * 109.47462 * 56.85688 * 1 2 3 27 27 H 1.09003 * 109.47058 * 176.85526 * 1 2 3 28 28 H 1.08997 * 111.00042 * 35.96874 * 4 2 1 29 29 H 1.09000 * 111.03300 * 272.13022 * 4 2 1 30 30 H 1.08996 * 110.36160 * 204.15354 * 5 4 2 31 31 H 1.08994 * 110.46284 * 81.87593 * 5 4 2 32 32 H 0.96997 * 119.99886 * 359.97438 * 9 7 6 33 33 H 1.09000 * 109.45997 * 324.97022 * 10 9 7 34 34 H 1.08999 * 109.49620 * 58.66415 * 11 10 9 35 35 H 1.08999 * 109.50065 * 298.56695 * 11 10 9 36 36 H 1.09006 * 109.58473 * 294.84900 * 12 11 10 37 37 H 1.09000 * 109.58860 * 174.42205 * 12 11 10 38 38 H 0.97001 * 119.99475 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.58551 * 173.13817 * 22 13 12 40 40 H 1.09001 * 109.58984 * 293.56422 * 22 13 12 41 41 H 1.09007 * 109.56262 * 185.55083 * 23 22 13 42 42 H 1.08999 * 109.36168 * 65.49967 * 23 22 13 43 43 H 1.08995 * 109.88087 * 118.13232 * 24 6 5 44 44 H 1.09003 * 109.87884 * 239.29457 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0790 -0.7935 1.2150 5 6 3.4653 -1.2446 0.6911 6 7 3.2494 -1.5469 -0.7356 7 6 4.0004 -2.3783 -1.4848 8 8 3.7290 -2.5528 -2.6570 9 7 5.0523 -3.0164 -0.9344 10 6 5.8690 -3.9197 -1.7488 11 6 6.5483 -4.9491 -0.8429 12 6 7.3736 -5.9130 -1.7013 13 7 8.3024 -5.1319 -2.5295 14 6 9.6447 -5.4021 -2.5167 15 1 10.1007 -5.8326 -1.6373 16 6 10.4196 -5.1229 -3.6341 17 7 9.8440 -4.9210 -4.8004 18 14 12.2793 -5.0335 -3.4824 19 1 12.6901 -3.6251 -3.2520 20 1 12.7237 -5.8720 -2.3401 21 1 12.9026 -5.5323 -4.7345 22 6 7.7643 -4.0512 -3.3669 23 6 6.9340 -3.1119 -2.4941 24 6 2.0831 -0.7862 -1.2074 25 1 -0.3633 0.4642 0.9169 26 1 -0.3634 0.5618 -0.8605 27 1 -0.3633 -1.0262 -0.0564 28 1 1.4469 -1.6530 1.4381 29 1 2.1820 -0.1497 2.0885 30 1 3.7993 -2.1364 1.2215 31 1 4.1944 -0.4422 0.8029 32 1 5.2691 -2.8769 0.0007 33 1 5.2330 -4.4337 -2.4696 34 1 5.7899 -5.5083 -0.2950 35 1 7.2037 -4.4373 -0.1382 36 1 6.7090 -6.4910 -2.3435 37 1 7.9376 -6.5860 -1.0554 38 1 10.3855 -4.7255 -5.5811 39 1 8.5860 -3.4962 -3.8197 40 1 7.1323 -4.4742 -4.1477 41 1 6.4500 -2.3632 -3.1214 42 1 7.5857 -2.6174 -1.7738 43 1 2.3848 -0.0959 -1.9951 44 1 1.3216 -1.4700 -1.5825 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609339784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:34 Heat of formation + Delta-G solvation = -13.610742 kcal Electronic energy + Delta-G solvation = -22700.900357 eV Core-core repulsion = 19460.361604 eV Total energy + Delta-G solvation = -3240.538754 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.26895 -38.32032 -37.01593 -34.34268 -33.15519 -31.85882 -30.00861 -29.83477 -29.37173 -26.59904 -24.80700 -23.30988 -22.16619 -21.81857 -20.55686 -19.78228 -19.29177 -17.91377 -16.79364 -16.60049 -15.67335 -14.94372 -14.81909 -14.43820 -14.06915 -13.74724 -13.65986 -13.47151 -13.25512 -13.03116 -12.88873 -12.73041 -12.42027 -12.23923 -12.10736 -11.45655 -11.35347 -11.11174 -11.07978 -10.98430 -10.85800 -10.72118 -10.33747 -10.18235 -10.04942 -9.91369 -9.71438 -9.51152 -8.81486 -8.49791 -8.30550 -6.65157 -5.75052 -3.18208 2.70740 3.39949 3.41919 3.46598 3.48233 4.04064 4.23621 4.34999 4.49547 4.52067 4.96478 5.02880 5.08735 5.25472 5.34066 5.37759 5.42238 5.44230 5.50568 5.56895 5.64770 5.70213 5.73856 5.77357 5.88898 5.98200 6.13193 6.17990 6.28528 6.43565 6.52072 6.66262 6.69797 6.83746 6.96654 7.02793 7.19684 7.44288 7.73035 7.82839 8.15496 8.48484 8.82361 9.24395 9.87798 10.44747 11.33478 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.040184 B = 0.003277 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.631228 B = 8542.412463 C = 8664.924312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 H 0.084 0.916 4 C -0.127 4.127 5 C 0.099 3.901 6 N -0.642 5.642 7 C 0.719 3.281 8 O -0.586 6.586 9 N -0.738 5.738 10 C 0.168 3.832 11 C -0.138 4.138 12 C 0.149 3.851 13 N -0.593 5.593 14 C -0.254 4.254 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.288 1.288 20 H -0.279 1.279 21 H -0.291 1.291 22 C 0.174 3.826 23 C -0.146 4.146 24 C 0.131 3.869 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.389 0.611 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.021 0.979 37 H 0.058 0.942 38 H 0.254 0.746 39 H 0.088 0.912 40 H 0.020 0.980 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.339 9.412 13.869 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.102 0.898 4 C -0.165 4.165 5 C -0.024 4.024 6 N -0.382 5.382 7 C 0.421 3.579 8 O -0.464 6.464 9 N -0.391 5.391 10 C 0.064 3.936 11 C -0.178 4.178 12 C 0.022 3.978 13 N -0.316 5.316 14 C -0.384 4.384 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.545 5.545 18 Si 0.733 3.267 19 H -0.215 1.215 20 H -0.204 1.204 21 H -0.218 1.218 22 C 0.048 3.952 23 C -0.187 4.187 24 C 0.007 3.993 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.222 0.778 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.038 0.962 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.379 9.206 12.748 22.705 hybrid contribution 1.095 0.260 0.512 1.237 sum -15.283 9.466 13.261 22.339 Atomic orbital electron populations 1.21742 0.93732 1.02319 1.02084 1.22238 0.96367 0.99418 0.94441 0.89771 1.22839 0.95682 1.00389 0.97614 1.22245 0.97773 1.00496 0.81912 1.47601 1.32140 1.47815 1.10687 1.15516 0.79592 0.78516 0.84280 1.90932 1.72850 1.67885 1.14703 1.45533 1.30459 1.49027 1.14097 1.20915 0.90996 0.89238 0.92418 1.22343 0.98882 0.97925 0.98672 1.20838 0.91964 0.92106 0.92892 1.44095 1.03204 1.34260 1.49998 1.19190 0.83056 1.39186 0.96931 0.91636 1.25067 0.98158 1.01715 0.94730 1.70047 1.34252 1.51814 0.98363 0.86275 0.85679 0.77800 0.76991 1.21518 1.20415 1.21781 1.20668 0.95959 0.88186 0.90432 1.22506 0.97071 0.99307 0.99790 1.21795 0.87149 0.94154 0.96178 0.92145 0.92217 0.92275 0.90459 0.89913 0.91012 0.91576 0.77768 0.90091 0.92701 0.91954 0.96141 0.92344 0.93604 0.89341 0.96151 0.92816 0.92873 0.91756 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.17 37.16 0.34 -0.48 16 2 C -0.11 -0.75 3.53 -88.78 -0.31 -1.07 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -0.82 6.53 -24.58 -0.16 -0.98 16 5 C 0.10 0.85 6.57 -2.52 -0.02 0.84 16 6 N -0.64 -8.18 3.33 -176.23 -0.59 -8.76 16 7 C 0.72 12.16 8.45 -86.92 -0.73 11.42 16 8 O -0.59 -12.53 16.33 5.29 0.09 -12.45 16 9 N -0.74 -11.43 5.04 -58.64 -0.30 -11.72 16 10 C 0.17 3.10 2.42 -67.89 -0.16 2.94 16 11 C -0.14 -2.37 5.55 -26.61 -0.15 -2.52 16 12 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 13 N -0.59 -15.10 3.00 -172.57 -0.52 -15.62 16 14 C -0.25 -7.03 9.58 -15.06 -0.14 -7.17 16 15 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 16 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 17 N -0.90 -26.72 11.20 55.49 0.62 -26.10 16 18 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 C 0.17 4.36 5.28 -3.93 -0.02 4.34 16 23 C -0.15 -3.07 5.63 -26.83 -0.15 -3.22 16 24 C 0.13 1.42 6.48 -3.06 -0.02 1.40 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 28 H 0.08 0.51 8.05 -51.93 -0.42 0.09 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.56 7.30 -51.93 -0.38 0.18 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.39 4.87 7.08 -40.82 -0.29 4.59 16 33 H 0.08 1.69 7.58 -51.93 -0.39 1.30 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.05 1.16 8.14 -51.92 -0.42 0.73 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.76 7.78 -51.93 -0.40 0.35 16 LS Contribution 344.19 15.07 5.19 5.19 Total: -1.00 -33.16 344.19 -9.83 -42.98 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.65 Total: 1.02 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -1.64 Total: 8.59 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -0.78 Total: -62.20 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.16 -9.83 -42.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609339784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.372 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds