Wall clock time and date at job start Tue Mar 31 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47481 * 2 1 4 4 C 1.34771 * 119.99878 * 89.99808 * 3 2 1 5 5 O 1.21590 * 119.99525 * 176.11899 * 4 3 2 6 6 N 1.34770 * 120.00245 * 356.12629 * 4 3 2 7 7 C 1.46503 * 120.00107 * 184.97968 * 6 4 3 8 8 C 1.53041 * 109.46140 * 154.99593 * 7 6 4 9 9 C 1.53194 * 109.31283 * 181.38732 * 8 7 6 10 10 N 1.46926 * 108.89282 * 305.29702 * 9 8 7 11 11 C 1.36939 * 120.62470 * 233.67654 * 10 9 8 12 12 H 1.07999 * 120.00353 * 30.89734 * 11 10 9 13 13 C 1.38816 * 119.99633 * 210.89640 * 11 10 9 14 14 N 1.31622 * 119.99891 * 10.18780 * 13 11 10 15 15 Si 1.86803 * 120.00175 * 190.18722 * 13 11 10 16 16 H 1.48500 * 109.46829 * 60.00331 * 15 13 11 17 17 H 1.48503 * 109.47001 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47152 * 300.00335 * 15 13 11 19 19 C 1.47197 * 118.55564 * 53.53718 * 10 9 8 20 20 C 1.53033 * 109.46190 * 275.06863 * 7 6 4 21 21 C 1.46498 * 119.99709 * 269.99905 * 3 2 1 22 22 C 1.53004 * 117.49868 * 196.90015 * 21 3 2 23 23 C 1.53001 * 117.49989 * 128.27713 * 21 3 2 24 24 H 1.09001 * 109.47364 * 300.00455 * 1 2 3 25 25 H 1.09007 * 109.46805 * 60.00226 * 1 2 3 26 26 H 1.08999 * 109.47383 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46905 * 239.99617 * 2 1 3 28 28 H 1.09000 * 109.46558 * 120.00092 * 2 1 3 29 29 H 0.97002 * 120.00142 * 4.97743 * 6 4 3 30 30 H 1.09007 * 109.44610 * 35.03470 * 7 6 4 31 31 H 1.09003 * 109.49703 * 61.43708 * 8 7 6 32 32 H 1.08998 * 109.49648 * 301.33759 * 8 7 6 33 33 H 1.08999 * 109.58476 * 65.15741 * 9 8 7 34 34 H 1.09005 * 109.58532 * 185.43994 * 9 8 7 35 35 H 0.97003 * 119.99488 * 180.02562 * 14 13 11 36 36 H 1.09012 * 109.53446 * 186.67673 * 19 10 9 37 37 H 1.09003 * 109.68017 * 66.36982 * 19 10 9 38 38 H 1.09005 * 109.49625 * 298.56549 * 20 7 6 39 39 H 1.09001 * 109.50399 * 58.62552 * 20 7 6 40 40 H 1.08996 * 115.55294 * 342.60752 * 21 3 2 41 41 H 1.09005 * 117.49522 * 359.97438 * 22 21 3 42 42 H 1.08999 * 117.49924 * 145.02121 * 22 21 3 43 43 H 1.08997 * 117.50252 * 214.97896 * 23 21 3 44 44 H 1.09008 * 117.49624 * 359.97438 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.7149 3.1371 1.1683 6 7 1.9448 1.4097 2.3330 7 6 2.0860 2.1391 3.5956 8 6 1.1515 1.5302 4.6435 9 6 1.2763 2.3171 5.9520 10 7 2.6891 2.3506 6.3541 11 6 3.0688 1.9383 7.6035 12 1 2.5112 1.1640 8.1093 13 6 4.1706 2.5155 8.2198 14 7 4.7284 3.5884 7.7000 15 14 4.8618 1.7695 9.7867 16 1 5.2895 0.3721 9.5229 17 1 6.0294 2.5666 10.2413 18 1 3.8163 1.7764 10.8412 19 6 3.6854 2.8337 5.3841 20 6 3.5336 2.0410 4.0820 21 6 2.2626 2.0717 -1.2688 22 6 3.1273 3.3334 -1.2314 23 6 1.6187 3.4463 -1.4603 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.6366 0.4899 2.3361 30 1 1.8250 3.1861 3.4410 31 1 1.4277 0.4901 4.8168 32 1 0.1229 1.5794 4.2862 33 1 0.9147 3.3344 5.8025 34 1 0.6868 1.8302 6.7289 35 1 5.4985 3.9915 8.1305 36 1 4.6876 2.6862 5.7869 37 1 3.5228 3.8935 5.1878 38 1 3.7874 0.9961 4.2605 39 1 4.2007 2.4531 3.3248 40 1 2.3472 1.4291 -2.1451 41 1 3.5140 3.6499 -0.2626 42 1 3.7810 3.5210 -2.0831 43 1 1.2799 3.7082 -2.4627 44 1 1.0129 3.8367 -0.6424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609341143.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:15 Heat of formation + Delta-G solvation = 34.052417 kcal Electronic energy + Delta-G solvation = -23163.958608 eV Core-core repulsion = 19925.486684 eV Total energy + Delta-G solvation = -3238.471924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.53593 -37.89490 -36.29078 -35.39535 -33.90565 -31.88425 -30.25482 -29.86454 -29.15831 -25.11025 -23.54563 -23.02207 -22.28313 -22.14830 -21.45546 -19.86348 -19.10726 -17.57929 -16.86172 -16.40302 -15.48989 -15.15131 -14.86295 -14.42950 -14.06400 -14.00124 -13.64298 -13.43260 -13.29185 -12.99005 -12.95050 -12.49470 -12.32281 -12.02173 -11.60719 -11.44181 -11.30352 -11.10370 -10.99068 -10.86741 -10.72140 -10.34403 -10.27784 -10.19835 -10.01097 -9.73889 -9.62462 -9.24101 -8.71441 -8.45271 -8.24349 -6.60097 -5.74466 -3.22879 2.64808 3.28399 3.39870 3.45222 3.46023 3.92366 4.04093 4.50939 4.64083 4.88377 4.94286 4.96984 5.08809 5.18834 5.35207 5.38311 5.46217 5.49566 5.53860 5.62312 5.69873 5.76244 5.87558 5.94002 6.08666 6.13442 6.27762 6.36781 6.40839 6.53238 6.62877 6.69800 6.83537 6.85526 6.96465 7.01765 7.13929 7.46020 7.76384 7.82024 8.11660 8.50869 8.82378 9.25157 9.86687 10.45335 11.33514 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030406 B = 0.003895 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.656932 B = 7186.483699 C = 7639.953317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.110 3.890 3 N -0.607 5.607 4 C 0.706 3.294 5 O -0.578 6.578 6 N -0.739 5.739 7 C 0.169 3.831 8 C -0.138 4.138 9 C 0.149 3.851 10 N -0.593 5.593 11 C -0.255 4.255 12 H 0.064 0.936 13 C 0.005 3.995 14 N -0.904 5.904 15 Si 0.905 3.095 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.174 3.826 20 C -0.146 4.146 21 C 0.087 3.913 22 C -0.197 4.197 23 C -0.192 4.192 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.389 0.611 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.020 0.980 34 H 0.057 0.943 35 H 0.255 0.745 36 H 0.091 0.909 37 H 0.020 0.980 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.123 0.877 41 H 0.151 0.849 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.634 -7.503 -17.736 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 N -0.343 5.343 4 C 0.408 3.592 5 O -0.456 6.456 6 N -0.393 5.393 7 C 0.065 3.935 8 C -0.178 4.178 9 C 0.022 3.978 10 N -0.316 5.316 11 C -0.385 4.385 12 H 0.081 0.919 13 C -0.194 4.194 14 N -0.548 5.548 15 Si 0.735 3.265 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.209 1.209 19 C 0.047 3.953 20 C -0.187 4.187 21 C -0.018 4.018 22 C -0.234 4.234 23 C -0.230 4.230 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.224 0.776 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.141 0.859 41 H 0.169 0.831 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.153 -6.587 -17.611 20.117 hybrid contribution 0.150 -0.913 0.632 1.120 sum -7.003 -7.499 -16.978 19.838 Atomic orbital electron populations 1.22247 0.95832 1.02155 1.02930 1.21456 0.94508 0.82406 1.02956 1.46557 1.69848 1.13891 1.04002 1.16017 0.78788 0.84188 0.80182 1.90680 1.50378 1.19145 1.85444 1.45765 1.71586 1.16492 1.05502 1.20905 0.96641 0.95910 0.80057 1.22345 0.97356 1.00855 0.97281 1.20835 0.88027 0.96297 0.92673 1.44112 0.99791 1.75868 1.11801 1.19124 1.12313 1.14323 0.92705 0.91853 1.25168 1.00555 0.95759 0.97920 1.69967 1.24007 1.20148 1.40655 0.86340 0.78429 0.78449 0.83301 1.21035 1.21596 1.20879 1.20829 0.95815 0.93577 0.85033 1.22576 0.94780 1.01341 0.99984 1.21393 1.06261 0.88193 0.85956 1.24164 0.93383 0.99489 1.06360 1.23239 0.97247 1.00432 1.02130 0.92165 0.92125 0.91545 0.90247 0.90735 0.77639 0.90237 0.92020 0.92788 0.96231 0.92433 0.93510 0.89123 0.96160 0.92999 0.92703 0.85890 0.83145 0.89903 0.89151 0.88832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.24 37.16 0.38 -0.92 16 2 C 0.11 0.92 5.89 -4.04 -0.02 0.90 16 3 N -0.61 -7.31 2.84 -171.80 -0.49 -7.80 16 4 C 0.71 11.08 7.99 -86.93 -0.69 10.38 16 5 O -0.58 -11.07 11.89 5.29 0.06 -11.01 16 6 N -0.74 -10.88 4.95 -58.64 -0.29 -11.17 16 7 C 0.17 3.01 2.38 -67.89 -0.16 2.85 16 8 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 9 C 0.15 3.10 6.50 -3.71 -0.02 3.08 16 10 N -0.59 -14.97 3.00 -172.09 -0.52 -15.48 16 11 C -0.25 -7.01 9.59 -15.06 -0.14 -7.15 16 12 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 13 C 0.00 0.13 5.07 -17.43 -0.09 0.04 16 14 N -0.90 -26.56 11.01 55.49 0.61 -25.95 16 15 Si 0.91 21.75 29.57 -169.99 -5.03 16.73 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.17 4.30 5.27 -3.56 -0.02 4.28 16 20 C -0.15 -3.00 5.65 -26.61 -0.15 -3.15 16 21 C 0.09 0.97 6.62 -67.93 -0.45 0.52 16 22 C -0.20 -2.53 9.64 -26.73 -0.26 -2.79 16 23 C -0.19 -2.25 9.90 -26.73 -0.26 -2.51 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 28 H 0.07 0.60 6.45 -51.93 -0.34 0.26 16 29 H 0.39 4.69 6.38 -40.82 -0.26 4.43 16 30 H 0.08 1.60 7.65 -51.93 -0.40 1.20 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 35 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.09 2.51 6.08 -51.92 -0.32 2.19 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 1.15 8.09 -51.93 -0.42 0.73 16 40 H 0.12 1.02 8.09 -51.93 -0.42 0.60 16 41 H 0.15 2.51 4.94 -53.53 -0.26 2.25 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 1.32 7.84 -51.92 -0.41 0.91 16 LS Contribution 343.94 15.07 5.18 5.18 Total: -1.00 -31.42 343.94 -9.93 -41.35 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.42 Total: 5.11 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -2.05 Total: 3.05 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.68 Total: -60.41 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.06 Total: -11.01 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.42 -9.93 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609341143.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.404 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds