Wall clock time and date at job start Tue Mar 31 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 119.99818 * 2 1 4 4 C 1.53000 * 109.47216 * 124.99570 * 3 2 1 5 5 H 1.09004 * 109.46918 * 55.00075 * 4 3 2 6 6 C 1.52999 * 109.46839 * 174.99579 * 4 3 2 7 7 N 1.46493 * 109.47233 * 294.99830 * 4 3 2 8 8 C 1.34776 * 120.00034 * 155.00068 * 7 4 3 9 9 O 1.21582 * 119.99936 * 359.97438 * 8 7 4 10 10 N 1.34778 * 119.99808 * 180.02562 * 8 7 4 11 11 C 1.46504 * 120.00011 * 180.02562 * 10 8 7 12 12 C 1.53352 * 109.41782 * 275.12821 * 11 10 8 13 13 C 1.53190 * 109.15070 * 178.67570 * 12 11 10 14 14 N 1.46925 * 108.89356 * 54.57285 * 13 12 11 15 15 C 1.36935 * 120.62758 * 126.30089 * 14 13 12 16 16 H 1.08001 * 120.00088 * 332.62829 * 15 14 13 17 17 C 1.38817 * 119.99782 * 152.62208 * 15 14 13 18 18 N 1.31618 * 119.99923 * 159.36242 * 17 15 14 19 19 Si 1.86801 * 120.00195 * 339.36341 * 17 15 14 20 20 H 1.48501 * 109.47054 * 92.89675 * 19 17 15 21 21 H 1.48497 * 109.47324 * 212.90179 * 19 17 15 22 22 H 1.48501 * 109.46722 * 332.89954 * 19 17 15 23 23 C 1.46926 * 118.73822 * 306.31916 * 14 13 12 24 24 C 1.53037 * 109.46184 * 154.99596 * 11 10 8 25 25 H 1.07995 * 120.00070 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.00127 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00477 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47241 * 4.99134 * 3 2 1 29 29 H 1.09000 * 109.46903 * 244.99599 * 3 2 1 30 30 H 1.09001 * 109.47537 * 300.00044 * 6 4 3 31 31 H 1.08998 * 109.47318 * 60.00671 * 6 4 3 32 32 H 1.09008 * 109.47018 * 180.02562 * 6 4 3 33 33 H 0.97003 * 120.00073 * 334.99625 * 7 4 3 34 34 H 0.97003 * 120.00299 * 359.97438 * 10 8 7 35 35 H 1.09008 * 109.45773 * 35.02385 * 11 10 8 36 36 H 1.09004 * 109.68561 * 58.70322 * 12 11 10 37 37 H 1.09004 * 109.47287 * 298.50983 * 12 11 10 38 38 H 1.09004 * 109.58215 * 294.71811 * 13 12 11 39 39 H 1.08997 * 109.58828 * 174.43980 * 13 12 11 40 40 H 0.96999 * 119.99917 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.58248 * 173.39705 * 23 14 13 42 42 H 1.08994 * 109.58922 * 293.68210 * 23 14 13 43 43 H 1.09003 * 109.49698 * 61.43756 * 24 11 10 44 44 H 1.08997 * 109.50033 * 301.33801 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 1 3.6826 0.4575 1.1404 6 6 3.8874 2.6017 1.1109 7 7 2.2784 1.3225 2.4361 8 6 2.8472 0.8478 3.5620 9 8 3.9879 0.4280 3.5364 10 7 2.1510 0.8375 4.7160 11 6 2.7693 0.3220 5.9400 12 6 2.6026 -1.2015 5.9928 13 6 3.2799 -1.7376 7.2579 14 7 2.7374 -1.0287 8.4249 15 6 2.2150 -1.7239 9.4827 16 1 1.7900 -2.7046 9.3274 17 6 2.2317 -1.1682 10.7546 18 7 1.4031 -1.6102 11.6768 19 14 3.4302 0.2068 11.1575 20 1 2.7729 1.5188 10.9299 21 1 3.8452 0.1010 12.5794 22 1 4.6253 0.0936 10.2833 23 6 2.7656 0.4402 8.4351 24 6 2.0936 0.9552 7.1584 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0894 29 1 2.6213 1.4026 -0.9314 30 1 4.4503 2.6097 0.1776 31 1 3.2398 3.4775 1.1522 32 1 4.5799 2.6216 1.9526 33 1 1.3682 1.6572 2.4565 34 1 1.2407 1.1721 4.7363 35 1 3.8306 0.5708 5.9432 36 1 3.0642 -1.6521 5.1141 37 1 1.5416 -1.4504 6.0149 38 1 4.3552 -1.5697 7.1958 39 1 3.0818 -2.8051 7.3541 40 1 1.4145 -1.2216 12.5655 41 1 2.2257 0.8100 9.3069 42 1 3.7987 0.7856 8.4715 43 1 1.0373 0.6861 7.1693 44 1 2.1927 2.0394 7.1070 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609742425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:12 Heat of formation + Delta-G solvation = 3.647716 kcal Electronic energy + Delta-G solvation = -22565.279757 eV Core-core repulsion = 19325.489386 eV Total energy + Delta-G solvation = -3239.790371 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13258 -38.03683 -36.75154 -34.44868 -33.74419 -32.23913 -31.04884 -30.36946 -29.47701 -26.92909 -24.93255 -22.96318 -22.31197 -21.37561 -20.64443 -20.16232 -19.61991 -18.22568 -16.89197 -16.52020 -15.60970 -15.30142 -15.07576 -14.51017 -14.19478 -14.10474 -14.07409 -13.74463 -13.45822 -13.12858 -12.87909 -12.75650 -12.55799 -12.28840 -12.02638 -11.93041 -11.74162 -11.27526 -11.11737 -10.94343 -10.79279 -10.51216 -10.24092 -10.16035 -9.97234 -9.73762 -9.64935 -9.44636 -9.16947 -8.62561 -8.61058 -6.96828 -5.93573 -3.29038 1.98854 2.77588 3.32591 3.36061 3.50405 3.54281 4.28991 4.41864 4.54465 4.64201 4.85272 4.98768 5.06587 5.18784 5.21489 5.25645 5.37274 5.44603 5.45729 5.48493 5.64361 5.72524 5.80539 5.87144 6.03265 6.07957 6.17349 6.20958 6.32484 6.37207 6.40954 6.46618 6.53858 6.60982 6.68993 6.69369 6.83477 6.92754 7.10266 7.98071 8.13465 8.34599 8.75022 8.95845 9.73634 10.11735 11.22504 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032372 B = 0.003523 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.737641 B = 7945.171901 C = 8314.911444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 C -0.102 4.102 4 C 0.164 3.836 5 H 0.089 0.911 6 C -0.165 4.165 7 N -0.744 5.744 8 C 0.703 3.297 9 O -0.592 6.592 10 N -0.740 5.740 11 C 0.169 3.831 12 C -0.141 4.141 13 C 0.150 3.850 14 N -0.606 5.606 15 C -0.258 4.258 16 H 0.086 0.914 17 C 0.022 3.978 18 N -0.909 5.909 19 Si 0.881 3.119 20 H -0.289 1.289 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.130 3.870 24 C -0.140 4.140 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.392 0.608 34 H 0.391 0.609 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.025 0.975 39 H 0.065 0.935 40 H 0.262 0.738 41 H 0.076 0.924 42 H 0.027 0.973 43 H 0.069 0.931 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 8.624 -23.274 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.167 4.167 3 C -0.139 4.139 4 C 0.059 3.941 5 H 0.107 0.893 6 C -0.223 4.223 7 N -0.400 5.400 8 C 0.403 3.597 9 O -0.470 6.470 10 N -0.394 5.394 11 C 0.065 3.935 12 C -0.181 4.181 13 C 0.024 3.976 14 N -0.330 5.330 15 C -0.387 4.387 16 H 0.103 0.897 17 C -0.176 4.176 18 N -0.553 5.553 19 Si 0.712 3.288 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.194 1.194 23 C 0.003 3.997 24 C -0.180 4.180 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.225 0.775 34 H 0.224 0.776 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.088 0.912 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.000 8.201 -23.104 24.516 hybrid contribution -0.363 1.108 0.367 1.222 sum -0.363 9.309 -22.737 24.572 Atomic orbital electron populations 1.23831 0.95884 1.01831 1.01687 1.22920 0.96055 0.98380 0.99319 1.21106 0.98526 0.95922 0.98392 1.20698 0.92444 0.99319 0.81640 0.89312 1.22218 1.00195 0.97376 1.02532 1.45206 1.17678 1.69023 1.08079 1.15998 0.84746 0.78548 0.80382 1.90909 1.17329 1.53752 1.85007 1.45468 1.17400 1.68163 1.08355 1.20892 0.97706 0.93678 0.81215 1.22443 1.01542 0.94899 0.99220 1.20899 0.94886 0.96281 0.85538 1.44404 1.70475 1.00016 1.18126 1.18941 1.31840 1.02850 0.85037 0.89652 1.25285 0.98458 0.98315 0.95588 1.69837 1.36295 1.44498 1.04621 0.86968 0.83462 0.81796 0.76582 1.21642 1.23140 1.19447 1.21301 0.97569 0.85158 0.95639 1.22341 1.01124 0.98906 0.95595 0.88714 0.88528 0.87315 0.91015 0.89398 0.91807 0.92685 0.91734 0.77450 0.77561 0.90032 0.92227 0.92037 0.95697 0.91687 0.92790 0.90576 0.95466 0.91227 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.37 14.32 29.02 0.42 -0.96 16 2 C -0.15 -1.12 9.25 -36.02 -0.33 -1.45 16 3 C -0.10 -0.66 5.20 -27.88 -0.14 -0.80 16 4 C 0.16 1.49 2.56 -67.93 -0.17 1.31 16 5 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 6 C -0.16 -1.41 9.48 37.16 0.35 -1.05 16 7 N -0.74 -7.51 4.79 -58.68 -0.28 -7.80 16 8 C 0.70 10.04 8.49 -86.92 -0.74 9.30 16 9 O -0.59 -10.91 15.67 5.29 0.08 -10.83 16 10 N -0.74 -9.98 5.08 -58.47 -0.30 -10.28 16 11 C 0.17 2.82 2.42 -67.73 -0.16 2.65 16 12 C -0.14 -2.50 5.68 -26.45 -0.15 -2.65 16 13 C 0.15 3.10 6.50 -3.71 -0.02 3.08 16 14 N -0.61 -14.55 2.77 -172.32 -0.48 -15.03 16 15 C -0.26 -7.26 10.03 -15.06 -0.15 -7.41 16 16 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 17 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 18 N -0.91 -27.93 13.97 55.49 0.78 -27.16 16 19 Si 0.88 22.45 24.34 -169.99 -4.14 18.31 16 20 H -0.29 -7.02 6.62 56.52 0.37 -6.65 16 21 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 22 H -0.27 -6.80 6.64 56.52 0.38 -6.42 16 23 C 0.13 2.82 4.21 -3.71 -0.02 2.80 16 24 C -0.14 -2.40 5.55 -26.61 -0.15 -2.55 16 25 H 0.09 0.56 7.84 -52.49 -0.41 0.15 16 26 H 0.10 0.66 8.06 -52.48 -0.42 0.24 16 27 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.07 0.40 7.79 -51.93 -0.40 -0.01 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.39 3.02 8.62 -40.82 -0.35 2.67 16 34 H 0.39 4.20 8.62 -40.82 -0.35 3.84 16 35 H 0.08 1.52 7.58 -51.92 -0.39 1.13 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 1.33 7.93 -51.93 -0.41 0.92 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 41 H 0.08 1.80 4.50 -51.93 -0.23 1.56 16 42 H 0.03 0.60 7.07 -51.93 -0.37 0.23 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 349.20 15.07 5.26 5.26 Total: -1.00 -32.98 349.20 -8.02 -41.01 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.58 Total: 3.67 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.37 Total: 2.83 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.28 Total: -60.26 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.14 Total: 18.31 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.98 -8.02 -41.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609742425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.654 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds