Wall clock time and date at job start Tue Mar 31 2020 05:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 119.99818 * 2 1 4 4 C 1.53000 * 109.47216 * 124.99570 * 3 2 1 5 5 H 1.09004 * 109.46918 * 55.00075 * 4 3 2 6 6 C 1.52999 * 109.46839 * 174.99579 * 4 3 2 7 7 N 1.46493 * 109.47233 * 294.99830 * 4 3 2 8 8 C 1.34776 * 120.00034 * 155.00068 * 7 4 3 9 9 O 1.21582 * 119.99936 * 359.97438 * 8 7 4 10 10 N 1.34778 * 119.99808 * 180.02562 * 8 7 4 11 11 C 1.46504 * 120.00011 * 180.02562 * 10 8 7 12 12 C 1.53352 * 109.41782 * 275.12821 * 11 10 8 13 13 C 1.53190 * 109.15070 * 178.67570 * 12 11 10 14 14 N 1.46925 * 108.89356 * 54.57285 * 13 12 11 15 15 C 1.36935 * 120.62758 * 126.30089 * 14 13 12 16 16 H 1.08001 * 120.00088 * 332.62829 * 15 14 13 17 17 C 1.38817 * 119.99782 * 152.62208 * 15 14 13 18 18 N 1.31618 * 119.99923 * 159.36242 * 17 15 14 19 19 Si 1.86801 * 120.00195 * 339.36341 * 17 15 14 20 20 H 1.48501 * 109.47054 * 92.89675 * 19 17 15 21 21 H 1.48497 * 109.47324 * 212.90179 * 19 17 15 22 22 H 1.48501 * 109.46722 * 332.89954 * 19 17 15 23 23 C 1.46926 * 118.73822 * 306.31916 * 14 13 12 24 24 C 1.53037 * 109.46184 * 154.99596 * 11 10 8 25 25 H 1.07995 * 120.00070 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.00127 * 180.02562 * 1 2 3 27 27 H 1.08001 * 120.00477 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47241 * 4.99134 * 3 2 1 29 29 H 1.09000 * 109.46903 * 244.99599 * 3 2 1 30 30 H 1.09001 * 109.47537 * 300.00044 * 6 4 3 31 31 H 1.08998 * 109.47318 * 60.00671 * 6 4 3 32 32 H 1.09008 * 109.47018 * 180.02562 * 6 4 3 33 33 H 0.97003 * 120.00073 * 334.99625 * 7 4 3 34 34 H 0.97003 * 120.00299 * 359.97438 * 10 8 7 35 35 H 1.09008 * 109.45773 * 35.02385 * 11 10 8 36 36 H 1.09004 * 109.68561 * 58.70322 * 12 11 10 37 37 H 1.09004 * 109.47287 * 298.50983 * 12 11 10 38 38 H 1.09004 * 109.58215 * 294.71811 * 13 12 11 39 39 H 1.08997 * 109.58828 * 174.43980 * 13 12 11 40 40 H 0.96999 * 119.99917 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.58248 * 173.39705 * 23 14 13 42 42 H 1.08994 * 109.58922 * 293.68210 * 23 14 13 43 43 H 1.09003 * 109.49698 * 61.43756 * 24 11 10 44 44 H 1.08997 * 109.50033 * 301.33801 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 1 3.6826 0.4575 1.1404 6 6 3.8874 2.6017 1.1109 7 7 2.2784 1.3225 2.4361 8 6 2.8472 0.8478 3.5620 9 8 3.9879 0.4280 3.5364 10 7 2.1510 0.8375 4.7160 11 6 2.7693 0.3220 5.9400 12 6 2.6026 -1.2015 5.9928 13 6 3.2799 -1.7376 7.2579 14 7 2.7374 -1.0287 8.4249 15 6 2.2150 -1.7239 9.4827 16 1 1.7900 -2.7046 9.3274 17 6 2.2317 -1.1682 10.7546 18 7 1.4031 -1.6102 11.6768 19 14 3.4302 0.2068 11.1575 20 1 2.7729 1.5188 10.9299 21 1 3.8452 0.1010 12.5794 22 1 4.6253 0.0936 10.2833 23 6 2.7656 0.4402 8.4351 24 6 2.0936 0.9552 7.1584 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3585 2.1317 0.0894 29 1 2.6213 1.4026 -0.9314 30 1 4.4503 2.6097 0.1776 31 1 3.2398 3.4775 1.1522 32 1 4.5799 2.6216 1.9526 33 1 1.3682 1.6572 2.4565 34 1 1.2407 1.1721 4.7363 35 1 3.8306 0.5708 5.9432 36 1 3.0642 -1.6521 5.1141 37 1 1.5416 -1.4504 6.0149 38 1 4.3552 -1.5697 7.1958 39 1 3.0818 -2.8051 7.3541 40 1 1.4145 -1.2216 12.5655 41 1 2.2257 0.8100 9.3069 42 1 3.7987 0.7856 8.4715 43 1 1.0373 0.6861 7.1693 44 1 2.1927 2.0394 7.1070 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609742425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:11 Heat of formation + Delta-G solvation = -19.610446 kcal Electronic energy + Delta-G solvation = -22566.288306 eV Core-core repulsion = 19325.489386 eV Total energy + Delta-G solvation = -3240.798920 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25472 -39.45315 -37.71889 -35.95054 -34.56173 -33.99732 -32.32382 -31.96801 -30.80116 -27.50928 -26.75227 -24.58065 -23.74730 -22.55255 -21.61396 -21.18303 -20.75716 -19.43510 -18.64421 -17.71206 -17.13677 -16.43495 -16.11099 -15.95257 -15.71206 -15.34436 -15.17010 -14.84764 -14.74775 -14.48382 -14.23177 -14.12069 -13.77549 -13.52515 -13.40217 -13.12959 -12.61435 -12.58833 -12.54215 -12.27753 -12.02558 -11.90049 -11.75920 -11.73255 -11.55412 -11.36481 -11.22719 -10.71104 -10.31426 -10.15126 -9.71174 -8.96991 -8.16247 -5.48662 1.29832 1.43310 1.44167 1.52261 1.76019 2.24136 2.41815 3.05714 3.26981 3.39496 3.78843 3.83151 3.99149 4.05045 4.24112 4.28791 4.32692 4.42435 4.48706 4.54200 4.63331 4.69821 4.74143 4.82311 4.87556 4.91586 4.97083 5.03912 5.07384 5.08371 5.15156 5.16759 5.35205 5.41399 5.60179 5.65299 5.79858 5.86717 5.91747 6.09624 6.13212 6.90540 7.18885 7.61144 7.68169 8.01935 9.03639 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.032372 B = 0.003523 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.737641 B = 7945.171901 C = 8314.911444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.163 4.163 3 C -0.090 4.090 4 C 0.162 3.838 5 H 0.062 0.938 6 C -0.159 4.159 7 N -0.726 5.726 8 C 0.700 3.300 9 O -0.636 6.636 10 N -0.729 5.729 11 C 0.180 3.820 12 C -0.127 4.127 13 C 0.147 3.853 14 N -0.619 5.619 15 C -0.250 4.250 16 H 0.053 0.947 17 C -0.033 4.033 18 N -0.956 5.956 19 Si 0.945 3.055 20 H -0.267 1.267 21 H -0.311 1.311 22 H -0.266 1.266 23 C 0.121 3.879 24 C -0.126 4.126 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.408 0.592 34 H 0.409 0.591 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.028 0.972 39 H 0.057 0.943 40 H 0.262 0.738 41 H 0.059 0.941 42 H 0.031 0.969 43 H 0.072 0.928 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.454 11.124 -25.551 27.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.181 4.181 3 C -0.127 4.127 4 C 0.057 3.943 5 H 0.080 0.920 6 C -0.218 4.218 7 N -0.382 5.382 8 C 0.400 3.600 9 O -0.517 6.517 10 N -0.384 5.384 11 C 0.074 3.926 12 C -0.167 4.167 13 C 0.022 3.978 14 N -0.344 5.344 15 C -0.379 4.379 16 H 0.070 0.930 17 C -0.227 4.227 18 N -0.602 5.602 19 Si 0.773 3.227 20 H -0.194 1.194 21 H -0.240 1.240 22 H -0.191 1.191 23 C -0.004 4.004 24 C -0.165 4.165 25 H 0.129 0.871 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.052 0.948 33 H 0.244 0.756 34 H 0.245 0.755 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.091 0.909 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.462 10.748 -25.457 27.637 hybrid contribution -0.255 0.243 0.967 1.029 sum -0.717 10.991 -24.490 26.853 Atomic orbital electron populations 1.23972 0.95739 1.02515 1.00665 1.22961 0.96378 0.98491 1.00294 1.21040 0.98209 0.95893 0.97584 1.20797 0.92914 0.98585 0.81990 0.91976 1.22162 0.99886 0.97559 1.02149 1.45084 1.18297 1.67634 1.07194 1.16159 0.84224 0.78419 0.81192 1.90887 1.19428 1.55692 1.85727 1.45108 1.18061 1.67950 1.07258 1.20536 0.97004 0.92643 0.82370 1.22256 1.00997 0.95995 0.97447 1.20998 0.95217 0.95936 0.85697 1.44506 1.70795 1.01223 1.17837 1.18872 1.30667 1.01938 0.86465 0.92966 1.25881 0.99917 1.01472 0.95479 1.69959 1.38206 1.46936 1.05118 0.85945 0.81147 0.79987 0.75593 1.19365 1.23993 1.19055 1.21377 0.97999 0.83616 0.97396 1.22145 1.00577 1.00577 0.93228 0.87140 0.88816 0.88682 0.89116 0.87840 0.90023 0.91075 0.94823 0.75606 0.75537 0.91682 0.92020 0.92050 0.95396 0.92428 0.92872 0.92303 0.95065 0.90884 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 14.32 67.78 0.97 -1.25 16 2 C -0.16 -2.12 9.25 25.65 0.24 -1.88 16 3 C -0.09 -0.89 5.20 29.85 0.16 -0.74 16 4 C 0.16 2.62 2.56 44.99 0.12 2.74 16 5 H 0.06 1.37 7.58 -2.38 -0.02 1.35 16 6 C -0.16 -2.38 9.48 71.98 0.68 -1.70 16 7 N -0.73 -12.94 4.79 -457.83 -2.20 -15.13 16 8 C 0.70 18.75 8.49 179.05 1.52 20.27 16 9 O -0.64 -23.07 15.67 -3.97 -0.06 -23.13 16 10 N -0.73 -17.78 5.08 -457.17 -2.32 -20.10 16 11 C 0.18 5.62 2.42 45.12 0.11 5.73 16 12 C -0.13 -4.36 5.68 30.78 0.17 -4.18 16 13 C 0.15 6.03 6.50 86.36 0.56 6.59 16 14 N -0.62 -29.51 2.77 -699.10 -1.94 -31.44 16 15 C -0.25 -14.31 10.03 84.03 0.84 -13.46 16 16 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 17 C -0.03 -1.91 5.23 84.86 0.44 -1.47 16 18 N -0.96 -60.11 13.97 21.65 0.30 -59.81 16 19 Si 0.94 46.56 24.34 68.60 1.67 48.23 16 20 H -0.27 -12.16 6.62 99.48 0.66 -11.50 16 21 H -0.31 -15.62 7.11 99.48 0.71 -14.92 16 22 H -0.27 -12.79 6.64 99.48 0.66 -12.13 16 23 C 0.12 5.07 4.21 86.36 0.36 5.43 16 24 C -0.13 -3.97 5.55 30.67 0.17 -3.80 16 25 H 0.11 0.92 7.84 -2.91 -0.02 0.90 16 26 H 0.09 1.12 8.06 -2.91 -0.02 1.10 16 27 H 0.10 1.48 8.06 -2.91 -0.02 1.45 16 28 H 0.09 0.60 7.79 -2.39 -0.02 0.59 16 29 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.41 4.84 8.62 -92.71 -0.80 4.04 16 34 H 0.41 7.31 8.62 -92.71 -0.80 6.51 16 35 H 0.06 2.31 7.58 -2.38 -0.02 2.30 16 36 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 40 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 41 H 0.06 2.67 4.50 -2.39 -0.01 2.66 16 42 H 0.03 1.29 7.07 -2.39 -0.02 1.28 16 43 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -73.04 349.20 1.09 -71.95 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -0.71 Total: 17.15 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 6.35 Total: 12.29 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -6.15 Total: -126.49 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.06 Total: -23.13 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.67 Total: 48.23 kcal Total: -73.04 1.09 -71.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609742425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.342 kcal (2) G-P(sol) polarization free energy of solvation -73.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds