Wall clock time and date at job start Tue Mar 31 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50696 * 120.00054 * 2 1 4 4 C 1.52999 * 109.47356 * 124.99954 * 3 2 1 5 5 H 1.09002 * 109.46728 * 304.99575 * 4 3 2 6 6 C 1.53000 * 109.47245 * 184.99818 * 4 3 2 7 7 N 1.46493 * 109.47312 * 64.99310 * 4 3 2 8 8 C 1.34776 * 120.00402 * 205.00203 * 7 4 3 9 9 O 1.21586 * 119.99736 * 0.02562 * 8 7 4 10 10 N 1.34772 * 120.00306 * 180.02562 * 8 7 4 11 11 C 1.46502 * 120.00038 * 179.97438 * 10 8 7 12 12 C 1.53042 * 109.45937 * 275.02508 * 11 10 8 13 13 C 1.53198 * 109.30984 * 178.59992 * 12 11 10 14 14 N 1.46926 * 108.76248 * 54.65637 * 13 12 11 15 15 C 1.36943 * 120.63113 * 126.36178 * 14 13 12 16 16 H 1.07994 * 119.99706 * 331.86355 * 15 14 13 17 17 C 1.38810 * 120.00044 * 151.85901 * 15 14 13 18 18 N 1.31615 * 120.00222 * 343.06360 * 17 15 14 19 19 Si 1.86800 * 119.99722 * 163.06258 * 17 15 14 20 20 H 1.48501 * 109.47313 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46934 * 120.00290 * 19 17 15 22 22 H 1.48494 * 109.47228 * 239.99816 * 19 17 15 23 23 C 1.46921 * 118.74102 * 306.38086 * 14 13 12 24 24 C 1.53044 * 109.45981 * 154.96705 * 11 10 8 25 25 H 1.08006 * 119.99595 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.00683 * 180.02562 * 1 2 3 27 27 H 1.07996 * 119.99540 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47465 * 4.99672 * 3 2 1 29 29 H 1.09001 * 109.46757 * 244.99464 * 3 2 1 30 30 H 1.09002 * 109.46951 * 59.99724 * 6 4 3 31 31 H 1.08997 * 109.47392 * 299.99900 * 6 4 3 32 32 H 1.08999 * 109.46983 * 179.97438 * 6 4 3 33 33 H 0.97006 * 120.00004 * 25.00507 * 7 4 3 34 34 H 0.96999 * 120.00462 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46055 * 35.00268 * 11 10 8 36 36 H 1.08996 * 109.49518 * 298.56433 * 12 11 10 37 37 H 1.08998 * 109.49626 * 58.66563 * 12 11 10 38 38 H 1.09000 * 109.60064 * 294.86989 * 13 12 11 39 39 H 1.08993 * 109.70258 * 174.50288 * 13 12 11 40 40 H 0.96995 * 120.00015 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.58922 * 293.82246 * 23 14 13 42 42 H 1.09003 * 109.70712 * 173.47010 * 23 14 13 43 43 H 1.08992 * 109.50180 * 301.33872 * 24 11 10 44 44 H 1.09002 * 109.49232 * 61.43490 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 2.4883 1.1470 2.1060 6 6 3.7092 2.7046 1.2552 7 7 4.0546 0.2969 1.0003 8 6 4.6911 -0.2171 2.0713 9 8 4.4188 0.1790 3.1882 10 7 5.6294 -1.1700 1.9045 11 6 6.3217 -1.7283 3.0687 12 6 7.5064 -0.8317 3.4356 13 6 8.2068 -1.3994 4.6743 14 7 8.5679 -2.7994 4.4129 15 6 9.8565 -3.2308 4.5823 16 1 10.6777 -2.5401 4.4601 17 6 10.1072 -4.5559 4.9112 18 7 9.1384 -5.3115 5.3830 19 14 11.8197 -5.2667 4.6839 20 1 12.7227 -4.2192 4.1430 21 1 12.3378 -5.7381 5.9934 22 1 11.7603 -6.4077 3.7354 23 6 7.5205 -3.7276 3.9660 24 6 6.8275 -3.1337 2.7356 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5401 -0.9352 0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3587 2.1316 0.0895 29 1 2.6214 1.4025 -0.9314 30 1 2.9506 3.4756 1.3901 31 1 4.2560 2.8908 0.3308 32 1 4.4010 2.7247 2.0972 33 1 4.2716 -0.0194 0.1093 34 1 5.8464 -1.4864 1.0135 35 1 5.6315 -1.7809 3.9108 36 1 8.2092 -0.7987 2.6031 37 1 7.1481 0.1751 3.6500 38 1 7.5336 -1.3493 5.5301 39 1 9.1076 -0.8227 4.8837 40 1 9.3135 -6.2375 5.6125 41 1 6.7913 -3.8674 4.7640 42 1 7.9665 -4.6877 3.7063 43 1 5.9860 -3.7655 2.4516 44 1 7.5368 -3.0788 1.9097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609742426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:14 Heat of formation + Delta-G solvation = -2.312246 kcal Electronic energy + Delta-G solvation = -22396.481800 eV Core-core repulsion = 19156.432986 eV Total energy + Delta-G solvation = -3240.048814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.04142 -37.80729 -36.60163 -34.30683 -33.75026 -32.19487 -30.83284 -29.93698 -29.00876 -26.91339 -24.96761 -22.59182 -22.13064 -21.31825 -20.53686 -20.03202 -19.40716 -18.12882 -16.77174 -16.35720 -15.55796 -15.13043 -14.91381 -14.65716 -14.14053 -14.00200 -13.64504 -13.50266 -13.28417 -13.03175 -12.80022 -12.60230 -12.37647 -12.24899 -11.84004 -11.42107 -11.31071 -11.18716 -11.09956 -10.80464 -10.71559 -10.44253 -10.23170 -10.00461 -9.94687 -9.71417 -9.63626 -9.49499 -9.09510 -8.55812 -8.40806 -6.65987 -5.77782 -3.19827 2.00451 2.86199 3.37713 3.44444 3.45720 3.48052 4.35181 4.50982 4.53726 4.70685 4.81150 5.07144 5.23591 5.33766 5.36703 5.44543 5.49403 5.54407 5.55758 5.65632 5.67766 5.87039 5.94574 6.09738 6.12473 6.33226 6.35500 6.40806 6.44967 6.54174 6.57165 6.62879 6.65651 6.84303 6.96675 7.03239 7.17936 7.34888 7.64604 7.81451 8.22475 8.46586 8.83814 9.22785 9.86109 10.43374 11.31153 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037467 B = 0.003151 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.144403 B = 8885.125923 C = 9249.348558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C -0.101 4.101 4 C 0.165 3.835 5 H 0.088 0.912 6 C -0.165 4.165 7 N -0.747 5.747 8 C 0.702 3.298 9 O -0.591 6.591 10 N -0.740 5.740 11 C 0.169 3.831 12 C -0.139 4.139 13 C 0.147 3.853 14 N -0.593 5.593 15 C -0.250 4.250 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.175 3.825 24 C -0.146 4.146 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.392 0.608 34 H 0.390 0.610 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.020 0.980 39 H 0.055 0.945 40 H 0.253 0.747 41 H 0.021 0.979 42 H 0.091 0.909 43 H 0.053 0.947 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.617 11.311 -13.657 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.169 4.169 3 C -0.139 4.139 4 C 0.060 3.940 5 H 0.106 0.894 6 C -0.223 4.223 7 N -0.403 5.403 8 C 0.402 3.598 9 O -0.469 6.469 10 N -0.394 5.394 11 C 0.065 3.935 12 C -0.179 4.179 13 C 0.021 3.979 14 N -0.316 5.316 15 C -0.380 4.380 16 H 0.084 0.916 17 C -0.198 4.198 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.048 3.952 24 C -0.186 4.186 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.225 0.775 34 H 0.223 0.777 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.039 0.961 42 H 0.109 0.891 43 H 0.072 0.928 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.844 11.509 -12.520 21.929 hybrid contribution 1.029 -0.775 -1.005 1.634 sum -12.815 10.735 -13.525 21.503 Atomic orbital electron populations 1.23849 0.95941 1.01828 1.01605 1.22921 0.96009 0.98499 0.99427 1.21099 0.98129 0.96185 0.98474 1.20706 0.87630 0.86828 0.98882 0.89357 1.22216 1.01337 0.96262 1.02503 1.45246 1.43158 1.43645 1.08247 1.16035 0.79434 0.79783 0.84582 1.90912 1.68652 1.64236 1.23091 1.45552 1.41195 1.41818 1.10800 1.20891 0.92868 0.92930 0.86790 1.22383 0.96905 0.98223 1.00403 1.20879 0.96945 0.86932 0.93191 1.44106 1.06452 1.04310 1.76731 1.19237 0.83253 0.94474 1.41038 0.91622 1.25055 0.97319 0.98429 0.98950 1.70035 1.31651 1.07538 1.45550 0.86230 0.84237 0.78940 0.77416 1.20284 1.21740 1.21603 1.20731 0.89593 0.94481 0.90366 1.22539 0.99529 0.94226 1.02304 0.88636 0.88548 0.87312 0.89979 0.90505 0.91895 0.92657 0.91656 0.77485 0.77734 0.90139 0.92525 0.92739 0.96177 0.92638 0.93680 0.96122 0.89081 0.92829 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 14.32 29.01 0.42 -1.04 16 2 C -0.15 -1.19 9.25 -36.03 -0.33 -1.53 16 3 C -0.10 -0.70 5.20 -27.89 -0.15 -0.85 16 4 C 0.17 1.60 2.56 -67.93 -0.17 1.43 16 5 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 6 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 7 N -0.75 -7.88 4.78 -58.68 -0.28 -8.16 16 8 C 0.70 10.56 8.50 -86.92 -0.74 9.82 16 9 O -0.59 -11.50 15.67 5.29 0.08 -11.41 16 10 N -0.74 -10.61 5.08 -58.63 -0.30 -10.90 16 11 C 0.17 3.02 2.42 -67.89 -0.16 2.86 16 12 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 13 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 14 N -0.59 -15.00 2.99 -172.32 -0.52 -15.51 16 15 C -0.25 -6.89 9.58 -15.06 -0.14 -7.04 16 16 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 17 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 18 N -0.90 -26.21 11.19 55.49 0.62 -25.58 16 19 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 24 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 25 H 0.10 0.61 7.84 -52.48 -0.41 0.20 16 26 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 27 H 0.11 0.91 8.03 -52.49 -0.42 0.49 16 28 H 0.08 0.49 7.79 -51.93 -0.40 0.09 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.39 3.04 8.62 -40.82 -0.35 2.69 16 34 H 0.39 4.44 8.62 -40.82 -0.35 4.09 16 35 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 355.59 15.07 5.36 5.36 Total: -1.00 -32.02 355.59 -9.07 -41.09 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.65 Total: 4.37 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.36 Total: 4.15 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.47 Total: -60.16 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.41 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.02 -9.07 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609742426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.782 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds