Wall clock time and date at job start Tue Mar 31 2020 05:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00663 * 2 1 4 4 H 1.48498 * 109.47254 * 270.00463 * 3 2 1 5 5 H 1.48503 * 109.46649 * 30.00177 * 3 2 1 6 6 H 1.48497 * 109.46982 * 149.99954 * 3 2 1 7 7 C 1.38819 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00020 * 163.07254 * 7 2 1 9 9 N 1.36945 * 119.99592 * 343.06862 * 7 2 1 10 10 C 1.46927 * 120.63250 * 331.84826 * 9 7 2 11 11 C 1.53190 * 108.77662 * 233.58661 * 10 9 7 12 12 C 1.53032 * 109.31419 * 305.36741 * 11 10 9 13 13 N 1.46499 * 109.46247 * 181.38254 * 12 11 10 14 14 C 1.34773 * 120.00089 * 154.97019 * 13 12 11 15 15 O 1.21590 * 120.00161 * 0.02562 * 14 13 12 16 16 N 1.34782 * 120.00314 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00080 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46841 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.46832 * 180.02562 * 18 17 16 20 20 C 1.53002 * 117.49516 * 243.74113 * 19 18 17 21 21 C 1.53006 * 117.49541 * 175.08712 * 19 18 17 22 22 C 1.53050 * 109.52782 * 61.37171 * 12 11 10 23 23 C 1.46922 * 120.62575 * 151.83048 * 9 7 2 24 24 H 0.97004 * 119.99223 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.58035 * 113.79687 * 10 9 7 26 26 H 1.08999 * 109.69953 * 353.44870 * 10 9 7 27 27 H 1.08999 * 109.49402 * 185.41169 * 11 10 9 28 28 H 1.09001 * 109.49343 * 65.31727 * 11 10 9 29 29 H 1.09002 * 109.45935 * 301.36034 * 12 11 10 30 30 H 0.96998 * 120.00071 * 334.97630 * 13 12 11 31 31 H 0.96998 * 119.99012 * 0.02562 * 16 14 13 32 32 H 1.08993 * 109.47062 * 60.00409 * 17 16 14 33 33 H 1.09001 * 109.47020 * 299.99469 * 17 16 14 34 34 H 1.08991 * 109.47398 * 59.99336 * 18 17 16 35 35 H 1.09004 * 109.46391 * 299.99837 * 18 17 16 36 36 H 1.08998 * 115.55683 * 29.40921 * 19 18 17 37 37 H 1.09003 * 117.49717 * 0.02562 * 20 19 18 38 38 H 1.09005 * 117.49936 * 145.02209 * 20 19 18 39 39 H 1.09003 * 117.49584 * 214.97481 * 21 19 18 40 40 H 1.08997 * 117.50146 * 359.97438 * 21 19 18 41 41 H 1.08997 * 109.49667 * 58.57821 * 22 12 11 42 42 H 1.08998 * 109.49615 * 178.67810 * 22 12 11 43 43 H 1.09001 * 109.58479 * 246.19655 * 23 9 7 44 44 H 1.08996 * 109.59258 * 6.47806 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4399 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2729 9 7 1.3699 -2.3626 0.3443 10 6 0.2259 -2.3409 1.2661 11 6 0.4972 -3.3209 2.4118 12 6 0.8117 -4.7020 1.8328 13 7 1.0393 -5.6496 2.9266 14 6 0.8352 -6.9673 2.7301 15 8 0.4627 -7.3696 1.6449 16 7 1.0441 -7.8391 3.7366 17 6 0.8229 -9.2714 3.5228 18 6 1.1292 -10.0330 4.8140 19 6 0.8987 -11.5289 4.5905 20 6 -0.2072 -12.2027 5.4053 21 6 1.2621 -12.4782 5.7341 22 6 2.0673 -4.6178 0.9617 23 6 1.8137 -3.6528 -0.2007 24 1 -0.4849 0.8401 0.0004 25 1 -0.6771 -2.6409 0.7346 26 1 0.0967 -1.3358 1.6676 27 1 -0.3834 -3.3861 3.0509 28 1 1.3470 -2.9697 2.9973 29 1 -0.0284 -5.0416 1.2269 30 1 1.3367 -5.3287 3.7923 31 1 1.3409 -7.5180 4.6024 32 1 1.4785 -9.6255 2.7274 33 1 -0.2161 -9.4402 3.2396 34 1 0.4733 -9.6787 5.6091 35 1 2.1680 -9.8641 5.0976 36 1 1.0602 -11.8826 3.5722 37 1 -0.7709 -11.5801 6.1001 38 1 -0.7731 -12.9999 4.9231 39 1 1.6624 -13.4566 5.4681 40 1 1.6658 -12.0371 6.6454 41 1 2.9021 -4.2544 1.5610 42 1 2.3043 -5.6064 0.5685 43 1 1.0400 -4.0599 -0.8517 44 1 2.7330 -3.5127 -0.7692 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610351024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:08 Heat of formation + Delta-G solvation = 2.770574 kcal Electronic energy + Delta-G solvation = -21858.090929 eV Core-core repulsion = 18618.262522 eV Total energy + Delta-G solvation = -3239.828406 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.92814 -38.15963 -37.37955 -34.91964 -34.26634 -32.14513 -30.57282 -29.89837 -28.99157 -25.08643 -23.67725 -22.74284 -22.21133 -21.80740 -21.10769 -20.32771 -19.36235 -18.04169 -16.80612 -16.20927 -15.99629 -15.49456 -14.97511 -14.66549 -14.37394 -14.13311 -13.87502 -13.64950 -13.49583 -12.95158 -12.66764 -12.31176 -12.25548 -12.02249 -11.84140 -11.71832 -11.41431 -11.09316 -10.81790 -10.68944 -10.66322 -10.46498 -10.29786 -10.23589 -10.01061 -9.97089 -9.71682 -9.50250 -9.11832 -8.55542 -8.40314 -6.65412 -5.77515 -3.19333 2.83135 3.38448 3.40354 3.43110 3.45346 3.47704 4.22464 4.42382 4.51086 4.51337 4.53669 4.84200 5.00625 5.18646 5.26178 5.27225 5.37076 5.45058 5.52747 5.54691 5.65561 5.69648 5.72824 5.80698 5.92514 5.94603 6.12644 6.33439 6.40545 6.47910 6.54299 6.62239 6.65685 6.84562 6.95620 7.03286 7.16358 7.35146 7.64832 7.81336 8.20349 8.46981 8.81473 9.23079 9.86487 10.43835 11.31483 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.057434 B = 0.002564 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.394964 B =10919.816092 C =10967.454137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.740 5.740 14 C 0.701 3.299 15 O -0.591 6.591 16 N -0.754 5.754 17 C 0.142 3.858 18 C -0.100 4.100 19 C -0.150 4.150 20 C -0.180 4.180 21 C -0.180 4.180 22 C -0.139 4.139 23 C 0.147 3.853 24 H 0.254 0.746 25 H 0.021 0.979 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.390 0.610 31 H 0.393 0.607 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.020 0.980 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.887 -19.736 13.478 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.393 5.393 14 C 0.400 3.600 15 O -0.469 6.469 16 N -0.411 5.411 17 C 0.018 3.982 18 C -0.138 4.138 19 C -0.169 4.169 20 C -0.217 4.217 21 C -0.217 4.217 22 C -0.179 4.179 23 C 0.020 3.980 24 H 0.064 0.936 25 H 0.039 0.961 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.223 0.777 31 H 0.226 0.774 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.418 -19.948 12.424 23.543 hybrid contribution 0.696 1.083 0.879 1.559 sum 2.114 -18.865 13.303 23.180 Atomic orbital electron populations 1.70031 1.05243 1.25480 1.54043 1.25061 0.95299 0.98421 1.00996 0.86303 0.79118 0.83664 0.77723 1.21403 1.21592 1.20535 1.19181 0.92557 0.84761 1.41538 0.91693 1.44099 1.35828 1.01684 1.49979 1.20737 0.88920 0.97857 0.87695 1.22539 1.00450 0.94791 1.00811 1.20904 0.98322 0.87496 0.86805 1.45545 1.72744 1.04959 1.16066 1.16027 0.78560 0.81285 0.84083 1.90920 1.53526 1.78063 1.24415 1.45148 1.74834 1.06933 1.14157 1.21101 1.01665 0.78519 0.96927 1.21367 1.02229 0.92622 0.97559 1.22182 1.04299 0.93241 0.97193 1.23074 0.91576 1.03565 1.03505 1.22984 0.98408 1.00655 0.99700 1.22389 0.97266 0.99464 0.98831 1.20880 0.97871 0.86508 0.92704 0.93631 0.96093 0.89056 0.92798 0.92257 0.90105 0.77682 0.77393 0.91712 0.91653 0.91188 0.90924 0.87342 0.88716 0.88779 0.88771 0.88787 0.92495 0.92726 0.96163 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 11.19 55.49 0.62 -25.62 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 3 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.91 9.58 -15.05 -0.14 -7.05 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -15.03 2.99 -172.32 -0.52 -15.54 16 10 C 0.17 4.14 5.30 -3.71 -0.02 4.13 16 11 C -0.15 -2.71 5.55 -26.62 -0.15 -2.86 16 12 C 0.17 3.04 2.42 -67.89 -0.16 2.87 16 13 N -0.74 -10.77 5.08 -58.63 -0.30 -11.07 16 14 C 0.70 10.85 8.53 -86.92 -0.74 10.11 16 15 O -0.59 -11.82 16.01 5.29 0.08 -11.74 16 16 N -0.75 -8.23 5.56 -65.23 -0.36 -8.59 16 17 C 0.14 1.40 5.63 -4.04 -0.02 1.38 16 18 C -0.10 -0.68 5.61 -26.73 -0.15 -0.83 16 19 C -0.15 -1.01 5.73 -90.62 -0.52 -1.53 16 20 C -0.18 -1.12 10.18 -26.69 -0.27 -1.39 16 21 C -0.18 -1.06 10.25 -26.69 -0.27 -1.33 16 22 C -0.14 -2.63 5.65 -26.61 -0.15 -2.78 16 23 C 0.15 3.25 6.52 -3.71 -0.02 3.23 16 24 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.09 2.40 6.07 -51.93 -0.31 2.08 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.66 7.58 -51.93 -0.39 1.26 16 30 H 0.39 4.49 8.62 -40.82 -0.35 4.14 16 31 H 0.39 3.07 8.49 -40.82 -0.35 2.73 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.44 7.88 -51.93 -0.41 0.03 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.11 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.09 0.56 8.03 -51.93 -0.42 0.14 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -32.40 354.17 -10.56 -42.96 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.69 Total: 3.78 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -2.71 Total: 3.87 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: -0.56 Total: -60.82 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.40 -10.56 -42.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610351024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.734 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds