Wall clock time and date at job start Tue Mar 31 2020 05:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47263 * 2 1 4 4 N 1.29944 * 126.28670 * 90.02642 * 3 2 1 5 5 O 1.21303 * 110.25268 * 179.97438 * 4 3 2 6 6 C 1.33649 * 109.80759 * 359.97438 * 5 4 3 7 7 C 1.50696 * 126.54866 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47316 * 269.97649 * 7 6 5 9 9 C 1.46901 * 110.99940 * 66.04781 * 8 7 6 10 10 C 1.50700 * 109.47197 * 62.98818 * 9 8 7 11 11 H 1.07998 * 120.00202 * 4.72627 * 10 9 8 12 12 C 1.37880 * 120.00139 * 184.72234 * 10 9 8 13 13 N 1.31509 * 119.99888 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99606 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47448 * 90.00077 * 14 12 10 16 16 H 1.48509 * 109.46836 * 210.00010 * 14 12 10 17 17 H 1.48501 * 109.47601 * 329.99666 * 14 12 10 18 18 C 1.46903 * 111.00188 * 189.99986 * 8 7 6 19 19 C 1.52995 * 109.47205 * 163.96817 * 18 8 7 20 20 C 1.53004 * 109.47172 * 178.05743 * 19 18 8 21 21 C 1.53007 * 109.46751 * 65.00005 * 20 19 18 22 22 C 1.52999 * 109.47068 * 184.99990 * 20 19 18 23 23 N 1.31130 * 106.89906 * 359.76887 * 6 5 4 24 24 H 1.09004 * 109.47068 * 299.99626 * 1 2 3 25 25 H 1.08998 * 109.47576 * 60.00049 * 1 2 3 26 26 H 1.09007 * 109.47277 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47068 * 240.00374 * 2 1 3 28 28 H 1.09004 * 109.47399 * 120.00355 * 2 1 3 29 29 H 1.09007 * 109.47087 * 29.97914 * 7 6 5 30 30 H 1.08999 * 109.47168 * 149.97638 * 7 6 5 31 31 H 1.08995 * 109.46979 * 182.98977 * 9 8 7 32 32 H 1.09003 * 109.47212 * 302.98757 * 9 8 7 33 33 H 0.97005 * 119.99714 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.47171 * 283.97112 * 18 8 7 35 35 H 1.09004 * 109.47086 * 43.96613 * 18 8 7 36 36 H 1.09003 * 109.47204 * 298.06098 * 19 18 8 37 37 H 1.08997 * 109.47130 * 58.06214 * 19 18 8 38 38 H 1.09000 * 109.47065 * 305.00609 * 20 19 18 39 39 H 1.09000 * 109.46887 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.47031 * 300.00289 * 21 20 19 41 41 H 1.09006 * 109.46805 * 60.00031 * 21 20 19 42 42 H 1.08993 * 109.47091 * 60.00295 * 22 20 19 43 43 H 1.09001 * 109.46614 * 180.02562 * 22 20 19 44 44 H 1.09000 * 109.47265 * 299.99589 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2892 2.1457 1.0474 5 8 2.6781 3.2447 0.7124 6 6 2.7078 3.3276 -0.6212 7 6 3.1301 4.5222 -1.4370 8 7 1.9614 5.3715 -1.7029 9 6 1.4458 5.9615 -0.4604 10 6 2.4940 6.8617 0.1411 11 1 3.4178 7.0436 -0.3881 12 6 2.2739 7.4532 1.3669 13 7 3.1885 8.2392 1.8915 14 14 0.6764 7.1381 2.2824 15 1 0.8353 5.9521 3.1617 16 1 0.3369 8.3247 3.1084 17 1 -0.4132 6.8873 1.3051 18 6 2.2811 6.4138 -2.6875 19 6 0.9843 7.0123 -3.2360 20 6 1.3173 8.1308 -4.2254 21 6 2.0360 7.5400 -5.4401 22 6 0.0246 8.8119 -4.6791 23 7 2.3034 2.1692 -1.0841 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 3.8765 5.0935 -0.8850 30 1 3.5565 4.1847 -2.3817 31 1 0.5497 6.5425 -0.6786 32 1 1.2009 5.1672 0.2448 33 1 3.0334 8.6556 2.7538 34 1 2.8691 7.1972 -2.2094 35 1 2.8544 5.9773 -3.5055 36 1 0.4124 6.2359 -3.7443 37 1 0.3952 7.4181 -2.4137 38 1 1.9636 8.8633 -3.7417 39 1 2.2729 8.3368 -6.1452 40 1 2.9569 7.0547 -5.1168 41 1 1.3898 6.8075 -5.9238 42 1 -0.4873 9.2328 -3.8138 43 1 0.2619 9.6085 -5.3843 44 1 -0.6216 8.0795 -5.1629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610392369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:36 Heat of formation + Delta-G solvation = 49.094120 kcal Electronic energy + Delta-G solvation = -22863.774071 eV Core-core repulsion = 19625.954404 eV Total energy + Delta-G solvation = -3237.819667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.07805 -37.86903 -35.96136 -35.65978 -33.42787 -32.41179 -31.23918 -28.99837 -28.19064 -26.96070 -25.30177 -24.83331 -23.18346 -22.61169 -20.92366 -19.82666 -19.42143 -17.65741 -17.14174 -16.69610 -15.42751 -15.15872 -14.78336 -14.46298 -14.27372 -14.24244 -13.78949 -13.21450 -13.19914 -12.88773 -12.70709 -12.50471 -12.15924 -11.98529 -11.78160 -11.63209 -11.38583 -11.30121 -11.18593 -11.07101 -10.97229 -10.81725 -10.57187 -10.46871 -10.36301 -10.27094 -10.13637 -9.82706 -9.62707 -9.45949 -8.63469 -7.45639 -6.16728 -4.17509 1.61732 2.61553 3.26778 3.33930 3.35731 3.37703 3.95731 4.36356 4.39472 4.73135 5.05943 5.16523 5.17180 5.18910 5.23195 5.25321 5.29849 5.54630 5.70311 5.73105 5.76946 5.78653 5.91225 5.92392 5.97981 6.01337 6.04384 6.12430 6.16337 6.20913 6.26834 6.33142 6.44424 6.48058 6.54685 6.68748 6.80123 6.85763 7.00495 7.42667 7.77297 7.84132 8.33541 8.64522 8.82007 9.46519 10.95546 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.011280 B = 0.006284 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.626615 B = 4454.441063 C = 6050.705205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.027 4.027 3 C 0.157 3.843 4 N -0.394 5.394 5 O 0.089 5.911 6 C 0.219 3.781 7 C 0.144 3.856 8 N -0.529 5.529 9 C 0.149 3.851 10 C -0.554 4.554 11 H 0.079 0.921 12 C 0.082 3.918 13 N -0.893 5.893 14 Si 0.869 3.131 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.265 1.265 18 C 0.060 3.940 19 C -0.104 4.104 20 C -0.097 4.097 21 C -0.146 4.146 22 C -0.144 4.144 23 N -0.485 5.485 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.036 0.964 32 H 0.020 0.980 33 H 0.265 0.735 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 -8.251 -9.964 13.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.066 4.066 3 C -0.117 4.117 4 N -0.103 5.103 5 O 0.031 5.969 6 C -0.002 4.002 7 C 0.014 3.986 8 N -0.254 5.254 9 C 0.022 3.978 10 C -0.592 4.592 11 H 0.097 0.903 12 C -0.122 4.122 13 N -0.530 5.530 14 Si 0.696 3.304 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.190 1.190 18 C -0.067 4.067 19 C -0.142 4.142 20 C -0.116 4.116 21 C -0.203 4.203 22 C -0.202 4.202 23 N -0.220 5.220 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.054 0.946 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.647 -9.031 -9.489 13.598 hybrid contribution -0.169 0.637 1.091 1.274 sum -3.816 -8.394 -8.398 12.472 Atomic orbital electron populations 1.21728 0.93640 1.02265 1.02872 1.19821 0.96591 0.86122 1.04051 1.25796 1.01358 1.00300 0.84197 1.74611 1.17894 0.93365 1.24381 1.85413 1.60030 1.26263 1.25162 1.28754 0.93686 0.96073 0.81682 1.20486 0.94421 0.87103 0.96585 1.62457 1.28025 1.21768 1.13148 1.20302 0.96579 0.94287 0.86636 1.21515 1.04131 1.28910 1.04692 0.90312 1.24853 0.96142 0.94203 0.96997 1.69901 1.34035 1.30883 1.18216 0.86933 0.84717 0.78161 0.80546 1.19889 1.21155 1.18994 1.22057 0.97200 0.93899 0.93584 1.21529 0.97841 0.96750 0.98058 1.21095 0.96826 0.97724 0.95941 1.21876 1.00520 1.00360 0.97540 1.21812 0.97547 0.99935 1.00885 1.71864 1.18601 1.02425 1.29122 0.92386 0.91899 0.91446 0.88986 0.89565 0.89359 0.87985 0.94568 0.96212 0.92556 0.92124 0.92265 0.92211 0.91466 0.91037 0.93431 0.92445 0.93006 0.92721 0.93247 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.89 37.16 0.37 -1.29 16 2 C -0.03 -0.34 6.56 -27.88 -0.18 -0.52 16 3 C 0.16 2.73 7.47 -156.37 -1.17 1.56 16 4 N -0.39 -7.86 12.16 30.90 0.38 -7.48 16 5 O 0.09 1.89 10.64 18.08 0.19 2.09 16 6 C 0.22 4.22 7.07 -13.06 -0.09 4.13 16 7 C 0.14 2.58 5.40 -4.98 -0.03 2.55 16 8 N -0.53 -10.22 4.66 -237.52 -1.11 -11.33 16 9 C 0.15 3.41 3.86 -4.98 -0.02 3.39 16 10 C -0.55 -14.40 7.89 -34.44 -0.27 -14.68 16 11 H 0.08 2.16 6.20 -52.49 -0.33 1.83 16 12 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 13 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 14 Si 0.87 21.44 27.38 -169.99 -4.65 16.79 16 15 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.27 -6.34 6.68 56.52 0.38 -5.96 16 18 C 0.06 1.02 4.51 -3.83 -0.02 1.00 16 19 C -0.10 -1.63 4.76 -26.73 -0.13 -1.75 16 20 C -0.10 -1.29 2.92 -90.61 -0.26 -1.55 16 21 C -0.15 -1.68 8.95 37.16 0.33 -1.34 16 22 C -0.14 -1.72 9.19 37.16 0.34 -1.38 16 23 N -0.49 -8.95 11.55 -9.87 -0.11 -9.07 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 1.69 6.59 -51.93 -0.34 1.35 16 30 H 0.10 1.52 7.86 -51.93 -0.41 1.12 16 31 H 0.04 0.85 6.02 -51.93 -0.31 0.54 16 32 H 0.02 0.49 5.85 -51.93 -0.30 0.18 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.06 1.17 6.15 -51.93 -0.32 0.86 16 35 H 0.06 0.87 6.32 -51.93 -0.33 0.54 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.19 6.68 -51.93 -0.35 0.85 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.66 6.61 -51.93 -0.34 0.32 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -29.83 349.49 -7.75 -37.58 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.26 Total: -0.66 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -1.23 Total: -7.72 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.07 Total: -53.34 kcal Atomic # 8 Polarization: 1.89 SS G_CDS: 0.19 Total: 2.09 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.65 Total: 16.79 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.83 -7.75 -37.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610392369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.675 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds