Wall clock time and date at job start Tue Mar 31 2020 05:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 115.55504 * 2 1 4 4 N 1.46501 * 109.47221 * 279.70419 * 3 2 1 5 5 C 1.34772 * 120.00054 * 175.41004 * 4 3 2 6 6 O 1.21585 * 119.99925 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99962 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99882 * 180.02562 * 7 5 4 9 9 C 1.53041 * 109.45811 * 275.02198 * 8 7 5 10 10 C 1.53196 * 109.31354 * 178.60217 * 9 8 7 11 11 N 1.46921 * 108.76419 * 54.65856 * 10 9 8 12 12 C 1.36932 * 120.63203 * 126.36323 * 11 10 9 13 13 H 1.07997 * 120.00332 * 329.77526 * 12 11 10 14 14 C 1.38813 * 119.99955 * 149.77479 * 12 11 10 15 15 N 1.31620 * 120.00048 * 343.18866 * 14 12 11 16 16 Si 1.86802 * 119.99938 * 163.19293 * 14 12 11 17 17 H 1.48495 * 109.47314 * 59.99663 * 16 14 12 18 18 H 1.48501 * 109.47098 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46944 * 299.99373 * 16 14 12 20 20 C 1.46925 * 118.73613 * 306.38035 * 11 10 9 21 21 C 1.53035 * 109.45929 * 154.97242 * 8 7 5 22 22 C 1.53007 * 117.51722 * 145.70517 * 2 1 3 23 23 C 1.52998 * 60.00212 * 107.47867 * 22 2 1 24 24 H 1.09000 * 109.46917 * 53.81560 * 1 2 3 25 25 H 1.08997 * 109.47480 * 173.81547 * 1 2 3 26 26 H 1.08994 * 109.46847 * 293.81580 * 1 2 3 27 27 H 1.08999 * 109.47226 * 159.70252 * 3 2 1 28 28 H 1.08998 * 109.46965 * 39.70173 * 3 2 1 29 29 H 0.97002 * 119.99854 * 355.40647 * 4 3 2 30 30 H 0.96996 * 120.00412 * 359.97438 * 7 5 4 31 31 H 1.08992 * 109.46400 * 34.99253 * 8 7 5 32 32 H 1.09001 * 109.49698 * 298.56914 * 9 8 7 33 33 H 1.09002 * 109.50008 * 58.66202 * 9 8 7 34 34 H 1.08997 * 109.59537 * 294.86948 * 10 9 8 35 35 H 1.09000 * 109.70399 * 174.50973 * 10 9 8 36 36 H 0.97000 * 119.99589 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.59471 * 293.82417 * 20 11 10 38 38 H 1.09001 * 109.70488 * 173.46553 * 20 11 10 39 39 H 1.08999 * 109.49816 * 301.32980 * 21 8 7 40 40 H 1.08995 * 109.50504 * 61.43183 * 21 8 7 41 41 H 1.08995 * 117.49909 * 214.97075 * 22 2 1 42 42 H 1.08995 * 117.49580 * 359.97438 * 22 2 1 43 43 H 1.09008 * 117.50169 * 252.51272 * 23 22 2 44 44 H 1.09001 * 117.49994 * 107.49054 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3803 0.0000 4 7 2.1906 1.9213 -1.3614 5 6 2.6400 3.1712 -1.5897 6 8 3.0444 3.8500 -0.6656 7 7 2.6401 3.6691 -2.8421 8 6 3.1291 5.0277 -3.0902 9 6 1.9972 6.0290 -2.8488 10 6 2.5214 7.4505 -3.0753 11 7 3.1179 7.5263 -4.4158 12 6 2.7166 8.4874 -5.3047 13 1 1.7046 8.8633 -5.2733 14 6 3.6104 8.9786 -6.2464 15 7 4.9030 8.7849 -6.0906 16 14 2.9789 9.9146 -7.7345 17 1 2.2355 11.1184 -7.2833 18 1 4.1259 10.3302 -8.5812 19 1 2.0733 9.0398 -8.5218 20 6 4.1531 6.5511 -4.7844 21 6 3.6107 5.1396 -4.5385 22 6 2.2369 -1.1211 0.7646 23 6 2.2364 -1.1208 -0.7654 24 1 -0.3633 0.6067 -0.8295 25 1 -0.3634 -1.0216 -0.1107 26 1 -0.3633 0.4150 0.9401 27 1 3.2163 1.2923 0.3565 28 1 1.6334 2.0491 0.6565 29 1 1.8676 1.3799 -2.0986 30 1 2.3171 3.1278 -3.5793 31 1 3.9563 5.2450 -2.4146 32 1 1.1797 5.8278 -3.5412 33 1 1.6385 5.9326 -1.8240 34 1 3.2766 7.6854 -2.3253 35 1 1.6988 8.1618 -3.0006 36 1 5.5275 9.1285 -6.7484 37 1 5.0415 6.7126 -4.1739 38 1 4.4079 6.6661 -5.8380 39 1 4.4008 4.4101 -4.7166 40 1 2.7779 4.9470 -5.2149 41 1 3.1720 -0.8752 1.2676 42 1 1.6119 -1.8586 1.2681 43 1 1.6111 -1.8583 -1.2687 44 1 3.1713 -0.8748 -1.2689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610593933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:57 Heat of formation + Delta-G solvation = 4.570129 kcal Electronic energy + Delta-G solvation = -22273.548608 eV Core-core repulsion = 19033.798236 eV Total energy + Delta-G solvation = -3239.750372 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.03659 -38.59582 -37.29296 -34.33853 -33.97335 -31.99303 -30.09838 -29.45446 -28.94336 -26.64822 -24.72911 -22.86684 -22.23809 -21.88271 -20.49189 -19.68729 -19.34916 -17.94887 -16.79582 -16.23665 -15.68776 -15.31804 -14.84874 -14.54764 -14.38918 -13.95378 -13.59404 -13.51459 -13.40022 -13.09069 -12.90150 -12.66004 -12.36447 -12.29623 -11.86926 -11.55726 -11.40567 -11.09889 -10.81448 -10.70092 -10.60967 -10.46312 -10.30139 -10.23364 -10.01549 -9.91436 -9.72010 -9.48984 -9.09810 -8.54196 -8.40406 -6.62696 -5.77720 -3.21335 2.76288 3.39461 3.43763 3.45055 3.46062 3.46396 4.28375 4.34916 4.43035 4.51311 4.61502 4.63959 5.25888 5.29307 5.36995 5.39365 5.44355 5.52784 5.53214 5.56608 5.60969 5.66696 5.74405 5.76876 5.90616 5.94735 6.12790 6.33905 6.40651 6.49285 6.54305 6.62481 6.65941 6.85496 6.96958 7.03968 7.17898 7.33423 7.62196 7.81926 8.21915 8.48208 8.82541 9.23276 9.86153 10.44988 11.31343 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.044736 B = 0.002922 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.740020 B = 9579.421422 C = 9618.468310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.146 4.146 3 C 0.178 3.822 4 N -0.749 5.749 5 C 0.701 3.299 6 O -0.592 6.592 7 N -0.740 5.740 8 C 0.169 3.831 9 C -0.139 4.139 10 C 0.148 3.852 11 N -0.592 5.592 12 C -0.254 4.254 13 H 0.064 0.936 14 C 0.004 3.996 15 N -0.902 5.902 16 Si 0.902 3.098 17 H -0.282 1.282 18 H -0.291 1.291 19 H -0.284 1.284 20 C 0.177 3.823 21 C -0.146 4.146 22 C -0.164 4.164 23 C -0.172 4.172 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.394 0.606 30 H 0.390 0.610 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.020 0.980 35 H 0.055 0.945 36 H 0.254 0.746 37 H 0.022 0.978 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.749 -20.366 8.914 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.147 4.147 3 C 0.053 3.947 4 N -0.405 5.405 5 C 0.401 3.599 6 O -0.471 6.471 7 N -0.393 5.393 8 C 0.065 3.935 9 C -0.180 4.180 10 C 0.021 3.979 11 N -0.315 5.315 12 C -0.384 4.384 13 H 0.082 0.918 14 C -0.195 4.195 15 N -0.546 5.546 16 Si 0.732 3.268 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.210 1.210 20 C 0.050 3.950 21 C -0.186 4.186 22 C -0.201 4.201 23 C -0.209 4.209 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.227 0.773 30 H 0.223 0.777 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.040 0.960 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.216 -19.623 9.678 22.746 hybrid contribution -0.571 -0.125 -1.481 1.593 sum -6.787 -19.748 8.197 22.433 Atomic orbital electron populations 1.21310 0.91511 1.01839 1.02414 1.21747 0.95329 0.90723 1.06880 1.20566 0.99890 0.91050 0.83166 1.45109 1.70414 1.15009 1.09996 1.16025 0.78794 0.81242 0.83884 1.90919 1.53825 1.59525 1.42786 1.45540 1.69167 1.17698 1.06898 1.20891 0.96516 0.78491 0.97581 1.22391 0.97902 0.97501 1.00162 1.20881 0.96242 0.92825 0.87982 1.44056 1.44910 1.32816 1.09707 1.19125 0.94332 1.15083 1.09876 0.91823 1.25105 0.94939 0.98615 1.00834 1.70025 1.00361 1.48970 1.35255 0.86376 0.77655 0.79805 0.82947 1.20852 1.21653 1.21047 1.20685 0.89683 0.83124 1.01485 1.22540 1.00404 1.01653 0.94014 1.23040 1.02315 1.00229 0.94538 1.23061 1.02581 1.00675 0.94627 0.91937 0.92418 0.91924 0.91927 0.91030 0.77275 0.77694 0.90114 0.92512 0.92723 0.96177 0.92621 0.93558 0.96031 0.89531 0.92811 0.92250 0.88445 0.88475 0.88601 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.73 37.16 0.36 -0.40 16 2 C -0.15 -1.08 2.13 -154.50 -0.33 -1.41 16 3 C 0.18 1.82 5.58 -4.04 -0.02 1.80 16 4 N -0.75 -8.28 5.52 -65.23 -0.36 -8.64 16 5 C 0.70 10.82 8.53 -86.92 -0.74 10.08 16 6 O -0.59 -11.80 16.00 5.29 0.08 -11.72 16 7 N -0.74 -10.77 5.08 -58.64 -0.30 -11.07 16 8 C 0.17 3.04 2.42 -67.89 -0.16 2.88 16 9 C -0.14 -2.64 5.65 -26.61 -0.15 -2.79 16 10 C 0.15 3.26 6.52 -3.71 -0.02 3.24 16 11 N -0.59 -15.01 2.98 -172.32 -0.51 -15.52 16 12 C -0.25 -7.02 9.56 -15.06 -0.14 -7.17 16 13 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 14 C 0.00 0.11 4.90 -17.43 -0.09 0.03 16 15 N -0.90 -26.26 11.35 55.49 0.63 -25.63 16 16 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 C 0.18 4.19 5.28 -3.71 -0.02 4.17 16 21 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 22 C -0.16 -1.06 9.90 -26.73 -0.26 -1.32 16 23 C -0.17 -1.12 9.82 -26.73 -0.26 -1.38 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.32 8.08 -51.93 -0.42 -0.09 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.69 7.95 -51.93 -0.41 0.28 16 28 H 0.07 0.83 8.13 -51.93 -0.42 0.40 16 29 H 0.39 3.34 8.42 -40.82 -0.34 3.00 16 30 H 0.39 4.52 8.62 -40.82 -0.35 4.17 16 31 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 36 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 2.26 6.23 -51.93 -0.32 1.94 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -32.02 354.17 -9.84 -41.86 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.70 Total: 3.88 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.99 Total: 4.87 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.54 Total: -60.86 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.72 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.02 -9.84 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610593933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.431 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds