Wall clock time and date at job start Tue Mar 31 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.87697 * 2 1 4 4 C 1.54326 * 110.01209 * 238.89683 * 2 1 3 5 5 C 1.55148 * 102.94581 * 262.70532 * 4 2 1 6 6 C 1.55127 * 101.48863 * 324.33312 * 5 4 2 7 7 N 1.47016 * 109.88270 * 121.01612 * 2 1 3 8 8 C 1.34777 * 125.65032 * 300.59209 * 7 2 1 9 9 O 1.21588 * 119.99939 * 0.02562 * 8 7 2 10 10 N 1.34776 * 120.00459 * 179.97438 * 8 7 2 11 11 C 1.46503 * 120.00248 * 180.02562 * 10 8 7 12 12 C 1.53035 * 109.44776 * 84.96455 * 11 10 8 13 13 C 1.53191 * 109.31236 * 181.38195 * 12 11 10 14 14 N 1.46929 * 108.77545 * 305.36669 * 13 12 11 15 15 C 1.36943 * 120.63294 * 233.58836 * 14 13 12 16 16 H 1.08000 * 119.99404 * 27.69321 * 15 14 13 17 17 C 1.38804 * 119.99837 * 207.69657 * 15 14 13 18 18 N 1.31618 * 120.00488 * 17.35070 * 17 15 14 19 19 Si 1.86806 * 119.99788 * 197.35548 * 17 15 14 20 20 H 1.48501 * 109.47162 * 89.99802 * 19 17 15 21 21 H 1.48496 * 109.47079 * 209.99949 * 19 17 15 22 22 H 1.48495 * 109.47122 * 330.00094 * 19 17 15 23 23 C 1.46924 * 118.73625 * 53.60723 * 14 13 12 24 24 C 1.53035 * 109.46075 * 205.03248 * 11 10 8 25 25 H 1.09003 * 109.47116 * 300.44002 * 1 2 3 26 26 H 1.09000 * 109.47038 * 60.43933 * 1 2 3 27 27 H 1.09002 * 109.47189 * 180.43608 * 1 2 3 28 28 H 1.09006 * 110.71722 * 21.07323 * 4 2 1 29 29 H 1.09000 * 110.72120 * 144.33764 * 4 2 1 30 30 H 1.09006 * 111.00547 * 82.57573 * 5 4 2 31 31 H 1.09002 * 111.00662 * 206.38515 * 5 4 2 32 32 H 1.09005 * 110.49296 * 278.45868 * 6 5 4 33 33 H 1.08990 * 110.34745 * 156.05864 * 6 5 4 34 34 H 0.96997 * 119.99681 * 0.02562 * 10 8 7 35 35 H 1.09002 * 109.45851 * 325.00340 * 11 10 8 36 36 H 1.09003 * 109.50176 * 301.33099 * 12 11 10 37 37 H 1.08996 * 109.49935 * 61.43289 * 12 11 10 38 38 H 1.09005 * 109.58899 * 185.58064 * 13 12 11 39 39 H 1.08997 * 109.59179 * 65.15342 * 13 12 11 40 40 H 0.97003 * 120.00197 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.58430 * 186.60579 * 23 14 13 42 42 H 1.08998 * 109.70564 * 66.25188 * 23 14 13 43 43 H 1.09005 * 109.49484 * 298.57729 * 24 11 10 44 44 H 1.08993 * 109.50166 * 58.63882 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0581 -0.7491 -1.2416 5 6 2.3574 -2.1680 -0.6902 6 6 2.8643 -1.8434 0.7395 7 7 2.0300 -0.7124 1.1849 8 6 1.7730 -0.3827 2.4662 9 8 1.0720 0.5783 2.7178 10 7 2.2922 -1.1190 3.4686 11 6 2.0123 -0.7609 4.8614 12 6 0.6810 -1.3823 5.2896 13 6 0.3746 -0.9777 6.7350 14 7 1.5153 -1.3511 7.5825 15 6 1.3318 -2.1221 8.6994 16 1 0.5058 -2.8163 8.7465 17 6 2.2073 -2.0111 9.7708 18 7 2.9907 -0.9585 9.8742 19 14 2.2737 -3.3557 11.0658 20 1 3.2791 -4.3746 10.6704 21 1 2.6556 -2.7649 12.3736 22 1 0.9393 -3.9965 11.1829 23 6 2.8564 -0.8814 7.2092 24 6 3.1349 -1.2871 5.7585 25 1 -0.3633 0.5207 0.8860 26 1 -0.3633 0.5070 -0.8939 27 1 -0.3634 -1.0276 0.0078 28 1 1.2961 -0.7905 -2.0200 29 1 2.9684 -0.2809 -1.6162 30 1 1.4520 -2.7742 -0.6592 31 1 3.1340 -2.6593 -1.2766 32 1 3.9148 -1.5533 0.7153 33 1 2.7218 -2.7016 1.3961 34 1 2.8511 -1.8859 3.2679 35 1 1.9528 0.3236 4.9526 36 1 -0.1144 -1.0251 4.6355 37 1 0.7479 -2.4682 5.2223 38 1 -0.5206 -1.4964 7.0778 39 1 0.2178 0.0997 6.7875 40 1 3.6023 -0.8808 10.6232 41 1 3.5987 -1.3367 7.8649 42 1 2.9045 0.2037 7.3008 43 1 3.1788 -2.3739 5.6867 44 1 4.0862 -0.8627 5.4378 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610594265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:20 Heat of formation + Delta-G solvation = -11.576765 kcal Electronic energy + Delta-G solvation = -22971.458378 eV Core-core repulsion = 19731.007824 eV Total energy + Delta-G solvation = -3240.450554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.36730 -38.27225 -36.91656 -34.37614 -32.54282 -31.35445 -31.21309 -29.97999 -29.09498 -26.04179 -25.03746 -23.29056 -22.17680 -21.89542 -20.81283 -19.69454 -19.08941 -17.94469 -16.71754 -16.24539 -15.89066 -14.96578 -14.71443 -14.56238 -13.94180 -13.67886 -13.54741 -13.51010 -13.22988 -12.91757 -12.75175 -12.70955 -12.34071 -12.27718 -12.05634 -11.49318 -11.40196 -11.08781 -10.95300 -10.90837 -10.78481 -10.71959 -10.44159 -10.22871 -9.99858 -9.88186 -9.70358 -9.49421 -8.82349 -8.49407 -8.35706 -6.66682 -5.77368 -3.19075 2.70274 3.38906 3.41257 3.45839 3.47315 4.05683 4.28333 4.42003 4.51320 4.63929 4.93036 5.08162 5.22258 5.34290 5.36711 5.39546 5.44861 5.47602 5.54676 5.60811 5.63283 5.65907 5.81645 5.94784 5.95696 6.11761 6.16705 6.32653 6.35042 6.43417 6.56983 6.64385 6.65681 6.84380 7.01204 7.03324 7.21367 7.35355 7.64857 7.81384 8.16969 8.46644 8.82802 9.22965 9.86400 10.43499 11.31512 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.038956 B = 0.003487 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.593349 B = 8027.772635 C = 8225.819770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.071 0.929 4 C -0.129 4.129 5 C -0.131 4.131 6 C 0.099 3.901 7 N -0.639 5.639 8 C 0.720 3.280 9 O -0.587 6.587 10 N -0.738 5.738 11 C 0.169 3.831 12 C -0.139 4.139 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.251 4.251 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.903 3.097 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.175 3.825 24 C -0.146 4.146 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.389 0.611 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.021 0.979 40 H 0.254 0.746 41 H 0.092 0.908 42 H 0.021 0.979 43 H 0.058 0.942 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 -2.431 -22.156 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.049 3.951 3 H 0.089 0.911 4 C -0.167 4.167 5 C -0.169 4.169 6 C -0.025 4.025 7 N -0.379 5.379 8 C 0.422 3.578 9 O -0.465 6.465 10 N -0.391 5.391 11 C 0.065 3.935 12 C -0.179 4.179 13 C 0.021 3.979 14 N -0.316 5.316 15 C -0.381 4.381 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.733 3.267 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.048 3.952 24 C -0.186 4.186 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.223 0.777 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.533 -1.637 -21.692 21.760 hybrid contribution 0.440 -1.108 0.544 1.311 sum 0.974 -2.746 -21.148 21.348 Atomic orbital electron populations 1.22162 0.94896 1.02125 1.02947 1.21314 0.94585 0.95839 0.83369 0.91128 1.22720 1.01750 0.95532 0.96699 1.22771 1.01913 0.97037 0.95142 1.22294 0.94901 0.89445 0.95854 1.47724 1.53910 1.32210 1.04008 1.15523 0.80408 0.82689 0.79145 1.90899 1.42996 1.30101 1.82457 1.45581 1.54872 1.32666 1.06031 1.20909 0.95538 1.00103 0.76958 1.22386 0.96440 1.00205 0.98882 1.20880 0.91472 0.97005 0.88565 1.44107 1.00970 1.59942 1.26562 1.19216 1.12908 1.13642 0.92332 0.91603 1.25040 1.00736 0.96985 0.96962 1.70032 1.27016 1.26367 1.31364 0.86279 0.77887 0.81616 0.80938 1.21501 1.21789 1.20450 1.20738 0.88536 0.96774 0.89135 1.22538 0.96034 1.00696 0.99300 0.90676 0.92144 0.92802 0.89926 0.90636 0.90553 0.89975 0.91576 0.91018 0.77709 0.90098 0.92731 0.92548 0.92627 0.96139 0.93623 0.89024 0.96088 0.92310 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.07 37.16 0.34 -1.44 16 2 C 0.15 1.62 3.49 -66.96 -0.23 1.38 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -0.89 6.49 -24.90 -0.16 -1.05 16 5 C -0.13 -0.85 7.10 -24.47 -0.17 -1.02 16 6 C 0.10 0.85 6.59 -2.41 -0.02 0.83 16 7 N -0.64 -7.88 3.08 -168.56 -0.52 -8.40 16 8 C 0.72 11.74 8.23 -86.92 -0.72 11.02 16 9 O -0.59 -11.84 14.89 5.29 0.08 -11.76 16 10 N -0.74 -11.34 5.04 -58.64 -0.30 -11.63 16 11 C 0.17 3.09 2.42 -67.89 -0.16 2.93 16 12 C -0.14 -2.66 5.65 -26.61 -0.15 -2.81 16 13 C 0.15 3.27 6.52 -3.71 -0.02 3.25 16 14 N -0.59 -15.08 3.00 -172.32 -0.52 -15.59 16 15 C -0.25 -6.95 9.59 -15.06 -0.14 -7.09 16 16 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 17 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 18 N -0.90 -26.26 11.19 55.49 0.62 -25.64 16 19 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.17 4.17 5.31 -3.71 -0.02 4.15 16 24 C -0.15 -2.75 5.55 -26.61 -0.15 -2.90 16 25 H 0.07 1.07 6.73 -51.93 -0.35 0.72 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.47 7.83 -51.93 -0.41 0.06 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.58 7.29 -51.93 -0.38 0.20 16 34 H 0.39 4.97 7.08 -40.82 -0.29 4.68 16 35 H 0.08 1.68 7.58 -51.93 -0.39 1.28 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -32.12 341.51 -9.80 -41.93 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.59 Total: 2.07 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -1.70 Total: 7.22 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.71 Total: -61.27 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.12 -9.80 -41.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610594265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.348 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds