Wall clock time and date at job start Tue Mar 31 2020 05:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53785 * 113.61260 * 2 1 4 4 C 1.53787 * 87.07940 * 219.93548 * 3 2 1 5 5 N 1.46494 * 113.61404 * 139.98183 * 4 3 2 6 6 C 1.34777 * 120.00297 * 154.99431 * 5 4 3 7 7 O 1.21592 * 119.99430 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00345 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99730 * 180.02562 * 8 6 5 10 10 C 1.53045 * 109.45772 * 154.99987 * 9 8 6 11 11 C 1.53184 * 109.31045 * 181.38140 * 10 9 8 12 12 N 1.46928 * 108.89946 * 305.29664 * 11 10 9 13 13 C 1.36937 * 120.62751 * 233.68087 * 12 11 10 14 14 H 1.07999 * 120.00448 * 27.38666 * 13 12 11 15 15 C 1.38820 * 119.99269 * 207.39032 * 13 12 11 16 16 N 1.31613 * 120.00097 * 17.25596 * 15 13 12 17 17 Si 1.86807 * 119.99669 * 197.25602 * 15 13 12 18 18 H 1.48497 * 109.46957 * 60.00245 * 17 15 13 19 19 H 1.48494 * 109.47182 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47157 * 300.00224 * 17 15 13 21 21 C 1.47200 * 118.55359 * 53.53256 * 12 11 10 22 22 C 1.53036 * 109.45844 * 275.06605 * 9 8 6 23 23 C 1.53776 * 87.08251 * 25.42787 * 4 3 2 24 24 H 1.09004 * 109.47146 * 60.00557 * 1 2 3 25 25 H 1.09002 * 109.46909 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47383 * 300.00111 * 1 2 3 27 27 H 1.08997 * 112.85196 * 131.19053 * 2 1 3 28 28 H 1.08995 * 113.61447 * 105.38305 * 3 2 1 29 29 H 1.09002 * 113.60986 * 334.47993 * 3 2 1 30 30 H 1.09001 * 113.60926 * 270.79948 * 4 3 2 31 31 H 0.97000 * 120.00464 * 334.99594 * 5 4 3 32 32 H 0.96999 * 119.99587 * 0.02562 * 8 6 5 33 33 H 1.08993 * 109.45309 * 35.03494 * 9 8 6 34 34 H 1.09004 * 109.49609 * 61.43436 * 10 9 8 35 35 H 1.09000 * 109.49498 * 301.33269 * 10 9 8 36 36 H 1.09005 * 109.58718 * 65.15681 * 11 10 9 37 37 H 1.09001 * 109.58894 * 185.43430 * 11 10 9 38 38 H 0.97008 * 119.99917 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.53557 * 186.67857 * 21 12 11 40 40 H 1.09002 * 109.67524 * 66.37760 * 21 12 11 41 41 H 1.09007 * 109.49849 * 298.56974 * 22 9 8 42 42 H 1.09003 * 109.49941 * 58.63468 * 22 9 8 43 43 H 1.09004 * 113.60847 * 89.11495 * 23 4 3 44 44 H 1.08997 * 113.61633 * 220.01466 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1459 1.4091 0.0000 4 6 3.1936 0.8656 -0.9859 5 7 3.5337 1.8047 -2.0576 6 6 4.7298 1.7205 -2.6730 7 8 5.5264 0.8647 -2.3391 8 7 5.0425 2.5842 -3.6593 9 6 6.3424 2.4922 -4.3286 10 6 6.2367 3.0927 -5.7324 11 6 7.5883 2.9636 -6.4416 12 7 8.6267 3.5772 -5.6025 13 6 9.4560 4.5406 -6.1116 14 1 9.1203 5.1678 -6.9242 15 6 10.7283 4.7110 -5.5832 16 7 11.2685 3.7617 -4.8489 17 14 11.6736 6.2879 -5.9142 18 1 10.9074 7.4447 -5.3850 19 1 12.9965 6.2222 -5.2428 20 1 11.8680 6.4506 -7.3773 21 6 8.7527 3.1358 -4.2039 22 6 7.3881 3.2630 -3.5196 23 6 2.1479 -0.1847 -1.3960 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.9532 -0.6615 0.7558 28 1 2.5636 1.7030 0.9629 29 1 1.4949 2.1701 -0.4303 30 1 4.0723 0.4420 -0.4996 31 1 2.8982 2.4872 -2.3242 32 1 4.4069 3.2666 -3.9259 33 1 6.6394 1.4461 -4.4026 34 1 5.9640 4.1454 -5.6581 35 1 5.4753 2.5582 -6.3003 36 1 7.8200 1.9099 -6.5976 37 1 7.5466 3.4747 -7.4035 38 1 12.1578 3.8806 -4.4800 39 1 9.4800 3.7628 -3.6880 40 1 9.0806 2.0967 -4.1751 41 1 7.1044 4.3141 -3.4662 42 1 7.4457 2.8501 -2.5124 43 1 1.4975 0.1407 -2.2079 44 1 2.5672 -1.1773 -1.5601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610641791.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:02 Heat of formation + Delta-G solvation = -0.221612 kcal Electronic energy + Delta-G solvation = -22312.857228 eV Core-core repulsion = 19072.899071 eV Total energy + Delta-G solvation = -3239.958157 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.28037 -38.90124 -37.23490 -34.29416 -33.64609 -31.96005 -30.05578 -29.65453 -28.86686 -25.93980 -25.02183 -23.05340 -22.17034 -21.62502 -20.55467 -19.86072 -19.33800 -17.92750 -16.78998 -16.38140 -15.74819 -15.05574 -14.88509 -14.63327 -14.17195 -13.88890 -13.65453 -13.45097 -13.21837 -12.95134 -12.75380 -12.60386 -12.51490 -12.26839 -11.87002 -11.44522 -11.20711 -11.08036 -10.89876 -10.70743 -10.69128 -10.52280 -10.33920 -10.22301 -10.04078 -9.90345 -9.70987 -9.51107 -9.03712 -8.56609 -8.34763 -6.65807 -5.75160 -3.17432 2.88562 3.40480 3.42064 3.46412 3.47288 4.26256 4.29429 4.39058 4.52128 4.59476 4.69359 5.12091 5.21209 5.34517 5.41191 5.43127 5.44284 5.48229 5.50453 5.58348 5.69618 5.74638 5.81135 5.88982 5.93766 6.11988 6.16004 6.28481 6.42468 6.50766 6.57205 6.65547 6.69561 6.82122 6.95988 7.00552 7.18870 7.43464 7.72797 7.82203 8.22403 8.47908 8.84399 9.23807 9.87553 10.44791 11.33514 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.044685 B = 0.002959 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.451573 B = 9461.591955 C = 9645.550102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C -0.144 4.144 4 C 0.144 3.856 5 N -0.741 5.741 6 C 0.701 3.299 7 O -0.590 6.590 8 N -0.741 5.741 9 C 0.168 3.832 10 C -0.138 4.138 11 C 0.149 3.851 12 N -0.593 5.593 13 C -0.254 4.254 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.901 5.901 17 Si 0.903 3.097 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.283 1.283 21 C 0.173 3.827 22 C -0.146 4.146 23 C -0.150 4.150 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.393 0.607 32 H 0.389 0.611 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.020 0.980 37 H 0.057 0.943 38 H 0.255 0.745 39 H 0.089 0.911 40 H 0.021 0.979 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.082 0.918 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.533 -4.077 7.458 23.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 C -0.183 4.183 4 C 0.038 3.962 5 N -0.396 5.396 6 C 0.401 3.599 7 O -0.467 6.467 8 N -0.394 5.394 9 C 0.064 3.936 10 C -0.178 4.178 11 C 0.021 3.979 12 N -0.316 5.316 13 C -0.384 4.384 14 H 0.083 0.917 15 C -0.197 4.197 16 N -0.546 5.546 17 Si 0.732 3.268 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.209 1.209 21 C 0.046 3.954 22 C -0.187 4.187 23 C -0.189 4.189 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.132 0.868 31 H 0.226 0.774 32 H 0.222 0.778 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.107 0.893 40 H 0.039 0.961 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.556 -4.876 7.813 22.525 hybrid contribution -0.130 1.465 -0.338 1.509 sum -20.686 -3.411 7.475 22.258 Atomic orbital electron populations 1.21688 0.94555 1.01733 1.01696 1.22315 0.95714 0.97258 0.98045 1.23447 0.97759 0.97184 0.99875 1.22289 0.96690 0.89832 0.87428 1.45165 1.17330 1.37322 1.39786 1.16086 0.81889 0.82077 0.79892 1.90922 1.49954 1.38396 1.67468 1.45539 1.20069 1.35316 1.38450 1.20899 0.80598 1.00755 0.91308 1.22339 1.00153 1.00417 0.94912 1.20832 0.87120 0.96249 0.93678 1.44157 1.36404 1.44449 1.06559 1.19129 0.93216 1.08448 1.17560 0.91682 1.25049 0.96022 0.97793 1.00818 1.70029 1.15439 1.30977 1.38108 0.86369 0.78967 0.83581 0.77841 1.21097 1.21647 1.20895 1.20809 0.91838 0.98389 0.84316 1.22565 0.98303 0.99059 0.98725 1.23586 0.98267 1.00304 0.96792 0.92648 0.92610 0.92557 0.88985 0.90855 0.89756 0.86783 0.77381 0.77811 0.90116 0.91954 0.92699 0.96193 0.92402 0.93536 0.89285 0.96102 0.92860 0.92836 0.89909 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.71 37.16 0.36 -0.46 16 2 C -0.11 -0.81 4.36 -89.81 -0.39 -1.20 16 3 C -0.14 -1.07 7.39 -25.91 -0.19 -1.26 16 4 C 0.14 1.48 4.24 -67.12 -0.28 1.19 16 5 N -0.74 -8.26 5.36 -57.88 -0.31 -8.57 16 6 C 0.70 10.97 8.53 -86.92 -0.74 10.23 16 7 O -0.59 -11.97 15.60 5.29 0.08 -11.88 16 8 N -0.74 -10.77 5.08 -58.64 -0.30 -11.07 16 9 C 0.17 3.03 2.42 -67.89 -0.16 2.87 16 10 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 11 C 0.15 3.10 6.50 -3.71 -0.02 3.08 16 12 N -0.59 -15.03 3.01 -172.10 -0.52 -15.55 16 13 C -0.25 -7.01 9.59 -15.06 -0.14 -7.15 16 14 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 15 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 16 N -0.90 -26.66 11.18 55.49 0.62 -26.04 16 17 Si 0.90 21.84 29.59 -169.99 -5.03 16.81 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C 0.17 4.30 5.33 -3.56 -0.02 4.28 16 22 C -0.15 -3.01 5.65 -26.61 -0.15 -3.16 16 23 C -0.15 -1.31 7.43 -25.92 -0.19 -1.51 16 24 H 0.05 0.32 7.95 -51.93 -0.41 -0.09 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.11 1.43 7.46 -51.93 -0.39 1.05 16 31 H 0.39 3.19 8.74 -40.82 -0.36 2.83 16 32 H 0.39 4.40 8.62 -40.82 -0.35 4.05 16 33 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 38 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.09 2.47 6.04 -51.93 -0.31 2.15 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.08 0.68 7.97 -51.93 -0.41 0.27 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -32.55 348.89 -10.03 -42.58 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.66 Total: 4.09 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -2.18 Total: 4.38 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.51 Total: -61.23 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.55 -10.03 -42.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610641791.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.356 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds