Wall clock time and date at job start Tue Mar 31 2020 05:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 112.84822 * 2 1 4 4 C 1.34778 * 119.99904 * 50.33945 * 3 2 1 5 5 O 1.21583 * 119.99933 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99861 * 179.97438 * 4 3 2 7 7 C 1.46495 * 120.00118 * 179.97438 * 6 4 3 8 8 C 1.53039 * 109.46476 * 204.99626 * 7 6 4 9 9 C 1.53192 * 109.31624 * 178.61195 * 8 7 6 10 10 N 1.46925 * 108.89163 * 54.56131 * 9 8 7 11 11 C 1.36940 * 120.62821 * 126.46045 * 10 9 8 12 12 H 1.08000 * 119.99751 * 331.92858 * 11 10 9 13 13 C 1.38810 * 120.00078 * 151.92771 * 11 10 9 14 14 N 1.31619 * 119.99689 * 343.17980 * 13 11 10 15 15 Si 1.86795 * 119.99988 * 163.18147 * 13 11 10 16 16 H 1.48509 * 109.47304 * 59.99932 * 15 13 11 17 17 H 1.48501 * 109.47440 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47535 * 299.99868 * 15 13 11 19 19 C 1.46954 * 118.71946 * 306.64559 * 10 9 8 20 20 C 1.53044 * 109.46278 * 84.92375 * 7 6 4 21 21 C 1.53776 * 113.61437 * 131.20038 * 2 1 3 22 22 C 1.53947 * 87.02056 * 89.22733 * 21 2 1 23 23 C 1.53784 * 113.61345 * 228.80956 * 2 1 3 24 24 H 1.09007 * 109.47319 * 69.66364 * 1 2 3 25 25 H 1.08993 * 109.47447 * 189.65989 * 1 2 3 26 26 H 1.08996 * 109.47265 * 309.67050 * 1 2 3 27 27 H 0.97004 * 120.00238 * 230.32659 * 3 2 1 28 28 H 0.96996 * 119.99854 * 359.97438 * 6 4 3 29 29 H 1.09009 * 109.46016 * 324.97414 * 7 6 4 30 30 H 1.09005 * 109.49298 * 58.66180 * 8 7 6 31 31 H 1.08998 * 109.49763 * 298.56780 * 8 7 6 32 32 H 1.08997 * 109.58838 * 174.42439 * 9 8 7 33 33 H 1.09002 * 109.58672 * 294.71002 * 9 8 7 34 34 H 0.97000 * 119.99637 * 180.02562 * 14 13 11 35 35 H 1.09000 * 109.47125 * 293.56762 * 19 10 9 36 36 H 1.09000 * 109.71403 * 173.28134 * 19 10 9 37 37 H 1.09000 * 109.50000 * 301.34377 * 20 7 6 38 38 H 1.09010 * 109.49012 * 61.40617 * 20 7 6 39 39 H 1.08998 * 113.61326 * 203.74826 * 21 2 1 40 40 H 1.09004 * 113.61233 * 334.65089 * 21 2 1 41 41 H 1.08999 * 113.54291 * 270.81114 * 22 21 2 42 42 H 1.09004 * 113.74152 * 139.94287 * 22 21 2 43 43 H 1.09000 * 113.61731 * 25.34616 * 23 2 1 44 44 H 1.08994 * 113.61417 * 156.25555 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0988 1.3501 0.0000 4 6 1.6740 2.2603 0.8986 5 8 0.8183 1.9611 1.7089 6 7 2.1977 3.5022 0.8989 7 6 1.7355 4.4918 1.8752 8 6 1.9674 5.9000 1.3228 9 6 1.4514 6.9313 2.3312 10 7 2.0852 6.6820 3.6331 11 6 2.7428 7.6860 4.2925 12 1 3.1971 8.4914 3.7345 13 6 2.8255 7.6685 5.6780 14 7 2.0161 6.9002 6.3759 15 14 4.0854 8.7353 6.5520 16 1 3.8373 10.1626 6.2254 17 1 3.9700 8.5365 8.0191 18 1 5.4501 8.3556 6.1065 19 6 2.0032 5.3337 4.2117 20 6 2.5130 4.3203 3.1822 21 6 2.1460 -0.9281 1.0601 22 6 2.0949 -2.0419 -0.0014 23 6 2.1460 -0.9280 -1.0604 24 1 -0.3634 0.3572 -0.9637 25 1 -0.3634 -1.0130 0.1724 26 1 -0.3633 0.6560 0.7910 27 1 2.7814 1.5888 -0.6466 28 1 2.8806 3.7407 0.2527 29 1 0.6718 4.3463 2.0641 30 1 1.4321 6.0136 0.3800 31 1 3.0336 6.0549 1.1572 32 1 1.7028 7.9350 1.9885 33 1 0.3696 6.8384 2.4278 34 1 2.0737 6.8882 7.3441 35 1 0.9669 5.1088 4.4636 36 1 2.6173 5.2815 5.1108 37 1 2.3662 3.3096 3.5630 38 1 3.5742 4.4895 2.9991 39 1 3.1585 -0.6478 1.3505 40 1 1.4939 -1.1080 1.9149 41 1 1.1594 -2.6013 -0.0008 42 1 2.9737 -2.6868 -0.0034 43 1 1.4939 -1.1078 -1.9151 44 1 3.1585 -0.6477 -1.3507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611110399.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:04 Heat of formation + Delta-G solvation = 7.421513 kcal Electronic energy + Delta-G solvation = -22815.440834 eV Core-core repulsion = 19575.814107 eV Total energy + Delta-G solvation = -3239.626727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.50578 -38.81533 -37.16667 -34.28858 -33.33414 -31.89264 -29.97515 -29.49929 -28.62294 -25.94991 -25.05866 -23.70861 -22.18927 -21.89289 -20.44186 -19.39838 -18.93592 -17.98059 -16.87960 -16.48573 -15.38460 -15.22801 -14.75898 -14.67038 -14.22383 -13.73218 -13.58572 -13.43837 -12.98072 -12.92960 -12.61085 -12.46897 -12.30980 -12.20634 -11.53509 -11.46882 -11.32836 -11.06128 -10.91432 -10.80828 -10.69340 -10.54652 -10.33586 -10.21139 -10.02145 -9.71693 -9.68519 -9.43276 -8.99026 -8.55036 -8.33496 -6.64449 -5.75097 -3.18239 2.89437 3.40443 3.45982 3.46346 3.47275 4.23790 4.40749 4.42181 4.52162 4.61512 4.67373 5.29976 5.36163 5.38006 5.44497 5.47122 5.50724 5.59508 5.63007 5.70616 5.75078 5.89228 5.92960 5.97317 6.07589 6.14566 6.28222 6.37089 6.43403 6.54003 6.64649 6.69699 6.70260 6.83129 6.97047 7.03631 7.20071 7.44046 7.73087 7.82465 8.26478 8.48689 8.89112 9.24509 9.87891 10.44957 11.33461 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035490 B = 0.003409 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.758887 B = 8212.730823 C = 8490.256667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.173 3.827 3 N -0.741 5.741 4 C 0.702 3.298 5 O -0.584 6.584 6 N -0.742 5.742 7 C 0.169 3.831 8 C -0.138 4.138 9 C 0.149 3.851 10 N -0.593 5.593 11 C -0.255 4.255 12 H 0.065 0.935 13 C 0.003 3.997 14 N -0.901 5.901 15 Si 0.903 3.097 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.284 1.284 19 C 0.174 3.826 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.139 4.139 23 C -0.140 4.140 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.392 0.608 28 H 0.388 0.612 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.020 0.980 34 H 0.255 0.745 35 H 0.020 0.980 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.299 -14.412 -16.212 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.087 3.913 3 N -0.397 5.397 4 C 0.403 3.597 5 O -0.462 6.462 6 N -0.395 5.395 7 C 0.065 3.935 8 C -0.179 4.179 9 C 0.022 3.978 10 N -0.315 5.315 11 C -0.385 4.385 12 H 0.083 0.917 13 C -0.196 4.196 14 N -0.545 5.545 15 Si 0.733 3.267 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.211 1.211 19 C 0.048 3.952 20 C -0.187 4.187 21 C -0.183 4.183 22 C -0.177 4.177 23 C -0.178 4.178 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.225 0.775 28 H 0.221 0.779 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.038 0.962 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.460 -14.664 -15.242 21.156 hybrid contribution 1.411 0.716 -0.159 1.590 sum 1.871 -13.949 -15.402 20.863 Atomic orbital electron populations 1.22023 0.92456 1.03055 1.03615 1.21521 0.94132 0.79326 0.96367 1.45239 1.44995 1.12137 1.37310 1.16051 0.81688 0.80556 0.81431 1.90847 1.34894 1.79045 1.41382 1.45569 1.44456 1.11187 1.38313 1.20876 0.99206 0.85791 0.87589 1.22340 1.01515 0.95006 0.98991 1.20826 0.94932 0.95554 0.86493 1.44088 1.62141 1.06759 1.18558 1.19128 1.26901 1.03755 0.88716 0.91745 1.25061 0.98591 0.99185 0.96751 1.70029 1.36555 1.42192 1.05720 0.86371 0.81649 0.80192 0.78533 1.20906 1.21636 1.21073 1.20749 0.98624 0.81602 0.94235 1.22569 0.99426 1.00287 0.96375 1.23416 1.01686 0.95503 0.97703 1.22753 1.02361 0.96125 0.96475 1.23315 1.01297 0.96097 0.97129 0.92855 0.91974 0.88500 0.77456 0.77900 0.90135 0.92717 0.91990 0.92425 0.96212 0.93543 0.96158 0.89409 0.92832 0.92935 0.90006 0.90773 0.89883 0.91070 0.90803 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.95 37.16 0.33 -1.43 16 2 C 0.17 1.83 1.25 -131.01 -0.16 1.67 16 3 N -0.74 -8.39 5.33 -51.66 -0.28 -8.66 16 4 C 0.70 10.81 8.29 -86.92 -0.72 10.09 16 5 O -0.58 -11.34 13.61 5.29 0.07 -11.27 16 6 N -0.74 -10.73 5.08 -58.63 -0.30 -11.03 16 7 C 0.17 3.03 2.41 -67.89 -0.16 2.86 16 8 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 9 C 0.15 3.12 6.51 -3.71 -0.02 3.09 16 10 N -0.59 -15.02 3.00 -172.30 -0.52 -15.54 16 11 C -0.26 -7.05 9.58 -15.06 -0.14 -7.20 16 12 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 13 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 14 N -0.90 -26.61 11.20 55.49 0.62 -25.99 16 15 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C 0.17 4.33 5.30 -3.70 -0.02 4.31 16 20 C -0.15 -3.00 5.65 -26.61 -0.15 -3.15 16 21 C -0.14 -1.53 7.45 -25.83 -0.19 -1.72 16 22 C -0.14 -1.07 7.74 -25.83 -0.20 -1.27 16 23 C -0.14 -1.06 7.37 -25.91 -0.19 -1.25 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.60 7.34 -51.93 -0.38 0.22 16 26 H 0.10 1.46 5.57 -51.93 -0.29 1.17 16 27 H 0.39 3.29 8.65 -40.82 -0.35 2.93 16 28 H 0.39 4.42 8.62 -40.82 -0.35 4.07 16 29 H 0.08 1.63 7.58 -51.92 -0.39 1.24 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.16 7.93 -51.93 -0.41 0.74 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 41 H 0.08 0.59 7.64 -51.93 -0.40 0.19 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 44 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16 LS Contribution 343.30 15.07 5.17 5.17 Total: -1.00 -32.03 343.30 -9.63 -41.66 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.51 Total: 5.33 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.87 Total: 3.52 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -0.47 Total: -61.22 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.07 Total: -11.27 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.03 -9.63 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611110399.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.085 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds